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File Format: MARKER, CellID, COPYNBR, PANELNBR, CELLNBR, pname, cellname

  

The Allele Call Data:

 

ALLELECALL.ZIP A 29.6 Mb zip file - The uncompressed file is approximately 290 Mb.

  

When uncompressed the file is comma delimited in the following format:

File Format: MARKER, CellID, AlleleCall, PANELNBR, CELLNBR, pname, cellname

  

The Identifiers Data:

 

IDENTIFIERS.ZIPA 3.6 Mb zip file - The uncompressed file is approximately 11 Mb

  

When uncompressed the file is comma delimited in the following format:

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Array CGH DNA copy number data

(relative to normal female DNA) from the Weinstein (NCI) and Gray (UCSF) labs Mol Cancer Ther. 2006 Apr;5(4):853-67.) 

 

CGH_COPYNUM.ZIP A 105 Kb zip file - The uncompressed file is approximately 1.0 Mb

  

When uncompressed the file is comma delimited in the following format:

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Data was processed with the Affymetrix MAS5 algorith, with a scaling factor of 100.

 

WEB_DATA_CHIRON.ZIP A 21.9 Mb zip file - The uncompressed file is approximately 305 Mb

  

When uncompressed the file is comma delimited in the following format:

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Data was processed with the Affymetrix MAS5 algorith, with a scaling factor of 100. 

  

  

WEB_DATA_GENELOGIC_U133.ZIP A 26.0 Mb zip file - The uncompressed file is approximately 314 Mb

  

When uncompressed the file is comma delimited in the following format:

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Microarray data - Affymetrix U95 array data from Gene Logic, Inc.

 

 

WEB_DATA_GENELOGIC_U95.ZIP A 34.1 Mb zip file - The uncompressed file is approximately 401 Mb.

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When uncompressed the file is comma delimited in the following format:

 

File Format: MOLTID (NCI pattern #), ACC, Gene, TITLE, MOLTNBR (NCI exp. id #), PANELNBR, CELLNBR, pname, cellname, CHIP, FEATURE_ID, UniGene, GeneID, VALUE Gene assignments are based on Unigene Build #U225 (August 2010)

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Microarray data - Affymetrix U95A data from Novartis, averaged data (from triplicate arrays) 

 

WEB_DATA_NOVARTIS.ZIP A 9.4 Mb zip file - The uncompressed file is approximately 84 Mb.

 

When  When uncompressed the file is comma delimited in the following format:  

File Format: MOLTID (NCI pattern #), ACC, Gene, TITLE, MOLTNBR (NCI exp. id #), PANELNBR, CELLNBR, pname, cellname, CHIP, FEATURE_ID, UniGene, GeneID, VALUE Gene assignments are based on Unigene Build #U214 (June 2008)

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Microarray data - Affymetrix U95A data from Novartis, data from individual arrays 

 

  

 

WEB_DATA_NOVARTIS_ALL.ZIP -A 26.8 Mb zip file - The uncompressed file is approximately 145 Mb.

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When uncompressed the file is comma delimited in the following format:  

File Format: Probe Set Name, ID (composite of the moltid derived from this measurement, and a letter to distinguish individual arrays), GENE, cellname, pname, PANELNBR, CELLNBR, Signal, Detection, P value Gene assignments are based on Unigene Build #U225 (August 2010)

 

  

Microarray data - cDNA array data from the Weinstein (NCI) and Brown & Botstein (Stanford) groups

 

 

Nat Genet. 2000 Mar;24(3):236-44.

 Nat Genet. 2000 Mar;24(3):227-35.

Units are log2 of singal from the test cell/reference pool 

 

WEB_DATA_STANFORD.ZIP A 5.5 Mb zip file - The uncompressed file is approximately 60.1 Mb.

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When uncompressed the file is comma delimited in the following format:  

File Format: MOLTID (NCI pattern #), ACC, Gene, TITLE, MOLTNBR(NCI exp. id #), PANELNBR, CELLNBR, pname, cellname, CHIP, FEATURE_ID, UniGene, GeneID, VALUE Gene assignments are based on Unigene Build #U225 (August 2010)

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Microarray data - Affymetrix HUM6000 array data from Millenium Pharmaceuticals

 Details of this experiment.

 

WEB_DATA_MILLENIUM.ZIP A 4.2 Mb zip file - The uncompressed file is approximately 47.2 Mb.

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When uncompressed the file is comma delimited in the following format:  

File Format: MOLTID (NCI pattern #), ACC, Gene, TITLE, MOLTNBR (NCI exp. id #), PANELNBR, CELLNBR, pname, cellname, CHIP, FEATURE_ID, UniGene, GeneID, VALUE Gene assignments are based on Unigene Build #U225 (August 2010)

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