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titleEVS Vocabulary Processing

EVS licenses and serves third party terminology as needed to meet NCI and caBIG requirements. These vocabularies come to EVS from a variety of sources and in a variety of formats. Though the LexBIG application is able to import most of these formats directly, a few terminologies require further processing before they can be loaded. Details on terminology sources, formats and processing are provided on this page.

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External vocabularies published by EVS

EVS makes available a number of terminologies through the NCI Browser and API that are produced by sources outside the NCI.Chemical Entities of Biological Interest


http://mged.sourceforge.net/ontologies/MGEDOntology.owl
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Name

Source

URL for Download

Secured?

Format

Size

Processing Notes

Gene Ontology

Gene Ontology Consortium

ftp://ftp.geneontology.org/pub/go/ontology-archive/

N/A

OBO

12M

None

HL7

Health Level Seven

http://www.hl7.org/Library/data-model/RIM/modelpage_mem.htm

N/A

RIM database

32M

None

NDF-RT

Department of

Veterinary

Veterans Affairs

http

https://

216

evs.

47

nci.

169

nih.

155

gov/

support

ftp1/

users/default.asp

NDF-RT/

Yes

OWL

4M

Converted from Ontylog to OWL by Lockheed Martin

The MGED Ontology

MGED Society

FGED Society

No longer being produced - has been incorporated into OBI

N/A

OWL

1M

None

UMLS

Unified Medical Language System

http://www.nlm.nih.gov.../umlsknowledgesources.html

Requires Free UMLS License

RRF

22G

See UMLS Subsets table below

UMLS SemNet

UMLS Semantic Network

http://semanticnetwork.nlm.nih.gov/Download/index.html

N/A

RRF

1M

None

Zebrafish

The Zebrafish Model Organization Database

http://obo.cvs.sourceforge.net/..../zebrafish_anatomy.obo

N/A

OBO

1M

None

ChEBIChemical Entities of Biological Interestftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.oboN/AOBO1MNone
Mouse AnatomyMouse Adult Gross Anatomyftp://ftp.informatics.jax.org../adult_mouse_anatomy.oboN/AOBO1MNone
HGNCHugo Gene Nomenclature Committee Ontologyftp://ftp.ebi.ac.uk/pub/databases/genenames/hgnc_complete_set.txt.gzNAFlat1MConvert to OWL
OBIOntology for Biomedical Investigations
http
https://
svn.code.sf.net/p
github.com/obi-ontology/obi/
.../merged-obi-comments
blob/master/obi.owlNAOWL1MNone
CanMEDCancer Medications Enquiry Databasehttps://seer.cancer.gov/oncologytoolbox/NAtxt13MConvert to OWL
DUOData Use Ontology




UMLS subsets published by EVS

The UMLS is not published in entirety. Instead a number of subset ontologies are extracted and published.

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