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Page History
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Data is provided as an Excel file listing copy number of each chromosomal band for each cell line. Download excel file
Affymetrix 125K SNP array data from the Sellers' lab Nature 436, 117-122 (2005).
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The Copy Number Data:
| A 51.6 Mb zip file - The uncompressed file is approximately 307 Mb. |
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File Format: MARKER, CellID, COPYNBR, PANELNBR, CELLNBR, pname, cellname
The Allele Call Data:
| ALLELECALL.ZIP | A 29.6 Mb zip file - The uncompressed file is approximately 290 Mb. |
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File Format: MARKER, CellID, AlleleCall, PANELNBR, CELLNBR, pname, cellname
The Identifiers Data:
| IDENTIFIERS.ZIP | A 3.6 Mb zip file - The uncompressed file is approximately 11 Mb |
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(relative to normal female DNA) from the Weinstein (NCI) and Gray (UCSF) labs Mol Cancer Ther. 2006 Apr;5(4):853-67.)
| CGH_COPYNUM.ZIP | A 105 Kb zip file - The uncompressed file is approximately 1.0 Mb |
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Data was processed with the Affymetrix MAS5 algorith, with a scaling factor of 100.
| WEB_DATA_CHIRON.ZIP | A 21.9 Mb zip file - The uncompressed file is approximately 305 Mb |
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Data was processed with the Affymetrix MAS5 algorith, with a scaling factor of 100.
| WEB_DATA_GENELOGIC_U133.ZIP | A 26.0 Mb zip file - The uncompressed file is approximately 314 Mb |
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Microarray data - Affymetrix U95 array data from Gene Logic, Inc.
| WEB_DATA_GENELOGIC_U95.ZIP | A 34.1 Mb zip file - The uncompressed file is approximately 401 Mb. |
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Microarray data - Affymetrix U95A data from Novartis, averaged data (from triplicate arrays)
| WEB_DATA_NOVARTIS.ZIP | A 9.4 Mb zip file - The uncompressed file is approximately 84 Mb. |
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Microarray data - Affymetrix U95A data from Novartis, data from individual arrays
| WEB_DATA_NOVARTIS_ALL.ZIP - | A 26.8 Mb zip file - The uncompressed file is approximately 145 Mb. |
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Units are log2 of singal from the test cell/reference pool
| WEB_DATA_STANFORD.ZIP | A 5.5 Mb zip file - The uncompressed file is approximately 60.1 Mb. |
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| WEB_DATA_MILLENIUM.ZIP | A 4.2 Mb zip file - The uncompressed file is approximately 47.2 Mb. |
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