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MultiExcerptNameLexEVS 6.0 Highlights Presentation
  • caBIG® Annual Meeting Semantic Infrastructure v2. Charlie Mead, Jane Brzozowski, Cecil Lynch, Raghu Chintalapati, Craig Stancl, September 14, 2010.
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Formerly posted at https://cabig.nci.nih.gov/2010_caBIG_Annual_Meeting_Presentations/tuesday-september-14-2010/concurrent-breakout-sessions-10-2013-14/breakout-sessions/session-13-cabigae-semantic-infrastructure-v2-overview
  • LexEVS Overview. (slides, 12.5 MB) LexEVS team, 2009 caBIG® Annual Meeting - Washington, D.C., July 20-22, 2009; Presentation to NCCH - Australia, March 2, 2009.
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}h3. Examples * Query Service with Program Examples, included in the LexEVS base installation. Both Lexical Set Operations and Graph Operations are included for common vocabulary functions using a sample vocabulary and CodedNodeSet. This is described in the [LexEVS:LexEVS 6.0 Installation Guide]. * Example Programs and Verification Test Suite, included in the LexEVS base installation. The Example Programs provide a limited interactive demonstration of LexEVS capabilities. Both are explained in the [LexEVS:LexEVS 6.0 Installation Guide]. * Code examples, [LexEVS Example Code zip file available on
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MultiExcerptNameLexEVS6.0c

Examples

Query Service with Program Examples, included in the LexEVS base installation. Both Lexical Set Operations and Graph Operations are included for common vocabulary functions using a sample vocabulary and CodedNodeSet. This is described in the [LexEVS:LexEVS 6.0 Installation Guide].

Example Programs and Verification Test Suite, included in the LexEVS base installation. The Example Programs provide a limited interactive demonstration of LexEVS capabilities. Both are explained in the [LexEVS:LexEVS 6.0 Installation Guide].

Code examples, [LexEVS Example Code zip file available on GForge|https://gforge.nci.nih.gov/docman/view.php/491/23706/LexEVS_60_Example_Code.zip].

These

are

code

examples

for

subjects

of

frequently

asked

questions

such

as

creating

a

coded

node

graph

using

the

LexBIG

convenience

methods.

h2.

Documentation

and

Training

* [

Notes|https://gforge.nci.nih.gov/docman/view.php/491/23714/lexevsapi60_notes.html] * [LexEVS:LexEVS 6.0 Installation Guide] - outlines the supported configurations and technical installation instructions for LexEVS Vocabulary Services for caBIG® * [LexEVS:LexEVS 6.0 Administration Guide] - outlines the environment configuration from the perspective of an existing installation * [LexEVS:LexEVS 6.0 Programmer's Guide] - explains the LexEVS API (services, extensions, utilities, and GUI); also many related APIs * [LexEVS:LexEVS 6.0 Design and Architecture Guide] - explains the LexGrid model and the LexBIG services * [LexEVS:LexEVS 6.0 Value Set and Pick List Definition Guide] - explains the LexEVS 6.0 Value Set and Pick List Definition documentation * [LexEVS:LexEVS 6.0 Loader Guide] - intended for a LexEVS developer and provides information about the loaders provided, mapping, and how to create your own loaders using the loader framework * [LexEVS:LexEVS 6.0 OWL Export Guide] - explains the steps necessary to export content in OWL/RDF format * [LexEVS:LexEVS in SpringSource MVC Maven Project] guide - shows how to use a local instance of LexEVS in a Spring 3.0.x MVC project and how to deploy it to a Tomcat server from within the SpringSource Tool Suite. * LexEVS 6.0 Javadocs - There are several parts to the LexEVS Javadocs to consult depending on what you are looking for. To download any of the Javadocs, go to the [Javadocs section|LexEVS:LexEVS 6.0 Installation Options#LexEVS Source Code, JavaDocs, and Examples] on the downloads page. You will find one download including all the Javadocs. ** If you have a local application accessing a Local Runtime, view the [Local Runtime Javadoc|http://informatics.mayo.edu/LexGrid/downloads/LexEVS_60_JavaDocs/LexEVS_Local_Runtime/] online. ** To interact with a LexEVS server that is hosting terminologies remotely, whether it be your own or the services at NCI, view the [Distributed Javadoc|http://lexevsapi60.nci.nih.gov/lexevsapi60/docs/] online. ** If you are using the Grid Analytical Services, view the [Grid Analytical Services Javadoc|http://informatics.mayo.edu/LexGrid/downloads/LexEVS_60_JavaDocs/LexEVS_Analytical_Grid_Services/] online. ** The Grid Data Service for LexEVS sits behind a caGrid interface. Most users do not reach this service via the Java API and in fact only a single method in the caGrid API is of interest. It can be found in the [Grid Data Service Implementation|http://software.cagrid.org/caGrid-1.3-javadocs/gov/nih/nci/cagrid/data/service/DataServiceImpl.html]. No formal LexEVS Server training courses exist in the caBIG® Learning Management System (LMS) at this time. h2. Contributions In the spirit of open source caBIG® invites you to participate in the community. The contribution process is described in [LexEVS:LexEVS Community Code Contribution]. LexEVS source code is in [NCI SVN|https://ncisvn.nci.nih.gov/svn/lexevs/]. h2. Related Tools * [Biomed GT Wiki|EVS:BiomedGT Wiki] * [NCI Protégé|Protege:NCI Protege] * [NCI Term Browser|EVS:NCI Term Browser] * [NCI Thesaurus|EVS:NCI Thesaurus (NCIt)] * [NCI Metathesaurus|EVS:NCI Metathesaurus (NCIm)]{multi-excerpt}
  • LexEVS 6.x Installation Guide - outlines the supported configurations and technical installation instructions for LexEVS Vocabulary Services for caBIG®
  • LexEVS 6.x Loader Guide - intended for a LexEVS developer and provides information about the loaders provided, mapping, and how to create your own loaders using the loader framework
  • LexEVS 6.0 Javadocs - There are several parts to the LexEVS Javadocs to consult depending on what you are looking for. To download any of the Javadocs, go to the Javadocs section on the downloads page. You will find one download including all the Javadocs.
  • To interact with a LexEVS server that is hosting terminologies remotely, whether it be your own or the services at NCI, view the Distributed Javadoc online.
  • The Grid Data Service for LexEVS sits behind a caGrid interface. Most users do not reach this service via the Java API and in fact only a single method in the caGrid API is of interest. It can be found in the Grid Data Service Implementation.
  • No formal LexEVS Server training courses exist in the caBIG® Learning Management System (LMS) at this time

Contributions

In the spirit of open source NCIP invites you to participate in the community.  The contribution process is described in LexEVS Community Code Contribution. LexEVS source code is in NCI SVN..

Related Tools

Biomed GT Wiki
NCI Protégé
NCI Term Browser
NCI Thesaurus
NCI Metathesaurus