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The NCI instance of the caArray database is now retired. For details about the retirement, see the caArray Retirement Announcement. |
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Tool Overview
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Installation and Downloads
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While caArray is a web-based application, it does have a dependent software stack, which includes: MySQL 5.0.27 database; JBoss 5.1. (hosts the caArray grid service and the caArray application); and JEMS installer 1.0.2 GA (supports EJB 3.0 specification)
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J2SE Development Kit | 6.0 (J2SE 6.0) |
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Apache Ant | 1.7.0 |
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MySQL | 5.1 |
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JBoss for UPT | 5.1 | – | |
JBOSS for Grid Service | 5.1. | – | |
JBOSS for caArray application | 5.1. | – |
GitHub Repositories
- caArray Github Repository
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Support for caArray
You can contact the NCI CBIIT Application Support if you have any questions or concerns.
- End User Forum
- Developer Forum
- caArray Developers Listserv
- caArray Users Listserv
- Report a Defect or Request a Feature at caArray Jira Tracker
- Mini-how to Submit Bug reports or Feature Requests in JIRA A tutorial on how to use JIRA for caArray.
- NCI CBIIT Application Support
Citations
For a list of articles that discuss caArray, visit caArray Citations.
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The current release of geWorkbench, version 2.5.0, connects with caArray 2.5.0 and 2.5.1
For more information, visit the geWorkbench project page.
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You may also download GenePattern.
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Once you've fetched your microarray data from caArray from any of the above versions of the caArrayImporter, you can use that data in any GenePattern module or pipeline that accepts gene expression data. To view compatible modules from within GenePattern you can click the context arrow next to the imported file (the result file of your caArrayImporter job in Recent Jobs) to see which modules can accept this dataset.
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