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Ontology Source Reference

This section is used to define the vocabulary source from which a term is selected and record information about ontologies containing the terms referenced in the ISA-TAB-Nano Nano  files. TABLE 1  TABLE 1 on the Investigation File Examples page shows an example of the ONTOLOGY SOURCE REFERENCE section along with example data. This section uses four ISA-TAB concepts:

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Investigation

This section is used to describe an allows for the description of the investigation. An  An example of the INVESTIGATION section is in TABLE 2 on the Investigation File Examples page. The INVESTIGATION section uses nine concepts and includes concepts from ISA-TAB and extensions made in support of ISA-TAB-Nano:

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Investigation Disease Term Accession Number---Identification number of a term selected from an ontology or a controlled vocabulary, if the term is entered as a value for investigation disease. This concept is introduced in ISA-TAB-Nano to identify the term accession number for the disease. (ISA-TAB Extension for ISA-TAB-Nano)

Investigation Disease Term Source REF--- The name which identifies the source from where the term for investigation disease is selected. This name should match one of the names entered in the term source name field. This concept is introduced in ISA-TAB-Nano to identify the term source ref for the disease. (ISA-TAB Extension for ISA-TAB-Nano)

Investigation Outcome---A textual description summarizing the conclusion of an investigation. This concept is introduced in ISA-TAB-Nano to identify the outcome of the investigation. (ISA-TAB Extension for ISA-TAB-Nano)

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