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When preparing documentation for a new release, keep in mind that this page contains the production version of the online help. Each release should also have a folder named after the release, for example, NBIA 6. |
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5, that contains the individual includes. The NBIA application links to those includes by anchor, for example, #NBIAHelpTopics-RegisteringaNewUser. Do not change those anchors. The topic names below can change and you can also add new topics. |
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If the new topic should be mapped to a Help link in the application, assign a new anchor to the new topic and provide it to the NBIA development team. |
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This page contains the online help topics for the NBIA Classic interface, which is not the current release of NBIA. The user's guide for the new NBIA Data Portal interface is also available. |
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Registering a New User
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Logging into NBIA
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Using the NBIA Home Page
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Using NBIA Online Help
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Performing a Simple Search
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Performing a Text Search
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Performing an Advanced Search
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Creating Saved Queries
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Working with Saved Queries
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Editing Saved Queries
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Viewing Query History
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Search Results Studies for Subject
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Creating a Shared List
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Searching a Shared List
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Editing a Shared List
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Managing a Shared List
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Managing the Data Basket
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Download Manager
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Downloading TCIA Images
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Click one of the following links to download the TCIA Downloader for that operating system. |
After you search for images of interest and add them to your data basket, you can download them.
The most convenient method of downloading is by using the TCIA Downloader. You must install the TCIA Downloader before you begin downloading. You only have to install it once to use it in future downloading sessions.
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If you cannot install the TCIA Downloader for any reason, you can run the Temporary TCIA Downloader (JNLP) instead. |
Installing the TCIA Downloader App
To install the TCIA Downloader app on Windows or Mac
- Download the installer package for Windows or Mac using the links above.
- Save the installer package file to your computer.
- Install the app by double-clicking the installer package file.
- Agree to the terms in the License Agreement and click Install.
- When the Setup Wizard ends, click Finish.
To install the TCIA Downloader app on Linux (centOS or Ubuntu)
You must have the sudu privilege on your computer and a sudu password to install the TCIA Downloader app on CentOS and Ubuntu.
- Download the installer package for centOS or Ubuntu using the links above.
- Save the installer package file to your computer.
- Open a command window and go to the location where you saved the installer.
- For a centOS system, enter the following at the command prompt:
sudo yum -v -y remove TCIADownloader.x86_64;sudo yum -y install TCIADownloader-2.0-1.x86_64.rpm - For a Ubuntu system, enter the following at the command prompt:
sudo -S dpkg -r TCIADownloader.x86_64;sudo -S dpkg -i TCIADownloader-2.0-2.x86_64.deb
Enter the sudo password when prompted.
- For a centOS system, enter the following at the command prompt:
Downloading Images Using the TCIA Downloader App
When you download images you have added to your data basket, TCIA provides a list of these images in a manifest file (manifest-xxx.tcia). You must have already installed the TCIA Downloader app to open this manifest file and download the images.
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You can share the manifest file with collaborators, so that they can download the same images that you have added to your data basket. Collaborators must also install the TCIA Downloader app to open the manifest file. If you want to share a manifest file that includes links to private image collections, you must first manually install the latest TCIA Downloader app. The latest version of the TCIA Downloader app controls access to private collections. In addition, your collaborators must have the same access to those private collections as you do. Otherwise, your collaborators will not be able to download images from those collections. |
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Open the manifest-xxx.tcia file.
The TCIA Downloader appears, with the items you added to your data basket in the Downloads table.
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The TCIA Downloader app lists all items you selected in the data basket. You can hover your mouse over the Patient ID, Study Instance, and Series Instance columns to reveal the complete corresponding IDs. You can also resize a column by selecting and dragging the column border. If you do not want to download any of those items, select them in the Downloads table and then click Delete. When you remove an item from the Downloads table, it stays in your data basket. |
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At any point in the process, you can click the Pause and Resume buttons to temporarily stop and restart the process.
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If network errors occur during large downloads, Download Manager retries the files the number of times that your administrator has configured. |
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Adding Items to Your Basket
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Downloading the Data Basket
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Download Manager
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Downloading NBIA Images
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Creating Manifest Files
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Viewing Submission Reports
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Accrual Report
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Image Submission Report
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Annotation Submission Report
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Using the Quality Control Tool
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Generating a QC Status Report
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Approving Image Deletions
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Manually Deleting Image Series
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Editing a Collection Description
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Managing Workflow Items Items
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Creating Workflow items
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Managing Saved Queries
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Managing
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Protection Groups
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Managing Protection Elements
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Managing User Groups
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Managing Users
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Adding Protection Groups and Assigning Roles
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Authorizing Protection Groups
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This topic belongs to the TCIA-branded version of the User Authentication Tool, accessed by logging into https://nbia.cancerimagingarchive.net/nbia-search/. |
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Authorizing User Groups
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This topic belongs to the TCIA-branded version of the User Authentication Tool, accessed by logging into https://nbia.cancerimagingarchive.net/nbia-search/. |
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