NIH | National Cancer Institute | NCI Wiki  

WIKI MAINTENANCE NOTICE

Please be advised that NCI Wiki will be undergoing maintenance on Thursday, May 23rd between 1200 ET and 1300 ET.
Wiki will remain available, but users may experience screen refreshes or HTTP 502 errors during the maintenance period. If you encounter these errors, wait 1-2 minutes, then refresh your page.

If you have any questions or concerns, please contact the CBIIT Atlassian Management Team.

Versions Compared

Old Version 19

changes.mady.by.user Klinger, Carolyn (NIH/NCI) [C]

Saved on

compared with

New Version 20

changes.mady.by.user Klinger, Carolyn (NIH/NCI) [C]

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Panel
titleContents of this Guide
Table of Contents
minLevel2

Introduction to DataScope

DataScope is a web application that allows you to browse and integrate multiple data types and visualize massive amounts of data. Using interactive, linked, dashboards, you can filter the data by attributes you select and view your results in scatterplots, data tables, image grids, and heatmaps.

Using the procedures explained in the DataScope Developer's Guide, you can customize your data, dashboards, and visualizations. This guide explains the way to manipulate the scatterplots, data tables, and image grids you use to visualize your data. This documentation does not yet include an explanation of how to use the heatmap visualization type.

Logging in to DataScope

You must have a Google account to log in to DataScope.

...

  1. In any browser, go to camicroscope.org/
    Multiexcerpt include
    nopaneltrue
    MultiExcerptNameExitDisclaimer
    PageWithExcerptwikicontent:Exit Disclaimer to Include
    .
    The caMicroscope Login page appears.
  2. Click Google Plus Sign In.
    The Google Offline Access page appears.
    Google Offline Access Request page. caMicroscope would like to have offline access. Deny or Allow.
  3. Click Allow.
    The caMicroscope page of product options appears.
    Image Added
  4. Scroll down to the DataScope - beta release section and click DataScope DataScope buttonImage Added.
    A demo of DataScope appears, which includes data from a co-clinical study. This data includes clinical, radiology, and pathology data, and pathology images from UC Davis and the TCGA BRCA studystudies.

    Integrative Data Query window highlighting the arrow next to the Filtering Attributes and the three visualization tabs

Filtering the Data

Filtering Attributes of the Integrative Data Query Application

Understanding the Visualization Types

Data Table: Provides a tabular representation of the provided attributes. Shows 100 records at a time.

...