Page History

Versions Compared

Old Version 8

changes.mady.by.user Unknown User (wileyal)

Saved on Jan 20, 2012

compared with

New Version Current

changes.mady.by.user Unknown User (wileyal)

Saved on Jan 20, 2012

Key

This line was added.
This line was removed.
Formatting was changed.

Comment: Migration of unmigrated content due to installation of a new plugin

Scrollbar

icons	false

...

Page info

...

title
title

Panel

title	Contents of this Page

Table of Contents

minLevel	2

1. Object Model Considerations

1.1 Map Set

Connects two versioned coding schemes
Is versioned itself.
Should be named in a descriptive fashion (e.g.

...

MDR12

...

SNOMEDCT_2010_07_31

...

Mappings).

...

Significant

...

amount

...

metadata

...

exists

...

this

...

level

...

Characterize

...

sets

...

(complexity,

...

completeness,

...

content

...

domain,

...

“officialness”,

...

Consider

...

metadata

...

track

...

whether

...

mappings

...

curated

...

not.

...

Consider

...

metadata

...

track

...

whether

...

mappings

...

generated

...

(and

...

reviewed)

...

not.

...

metadata

...

should

...

indicate

...

whether

...

rank

...

important,

...

useful,

...

even

...

present.

...

1.2

...

Group

...

of

...

Mappings

...

(a

...

mapping

...

subset,

...

or

...

search

...

results,

...

or

...

a

...

page

...

of

...

listings)

...

This
...
is
...
more
...
sophisticated
...
with
...
complex
...
rule-based
...
map
...
sets
...
where
...
a
...
collection
...
of
...
mapping
...
entries
...
may
...
actually
...
represent
...
only
...
a
...
single
...
mapping.
...

1.3

...

Mapping

...

"from"
...
and
...
"to"
...
codes
...
(or
...
expressions
...
of
...
codes)
...
Represented
...
as
...
an
...
association
...
with
...
qualifiers
...
for
...
other
...
semantically
...
important
...
information
...
If
...
target
...
is
...
an
...
expression,
...
represented
...
as
...
an
...
“association
...
to
...
data”
...
Have
...
“default
...
preferred
...
name”
...
in
...
the
...
event
...
that
...
a
...
"from"/"to"
...
code
...
cannot
...
be
...
resolved
...
in
...
a
...
loaded
...
coding
...
scheme
...
"map
...
rank"
...
may
...
be
...
a
...
standard
...
part
...
of
...
the
...
model.
...
If
...
so,
...
values
...
should
...
be
...
normalized,
...
so
...
that
...
1
...
always
...
means
...
"best"
...
and
...
increasing
...
numbers
...
represent
...
lowering
...
quality
...
(exactly
...
how
...
much
...
lower
...
and
...
why
...
is
...
map
...
set
...
dependent).
...
A
...
"map
...
rank"
...
threshold
...
can
...
be
...
chosen
...
by
...
an
...
application,
...
so
...
that
...
it
...
pays
...
attention
...
only
...
to
...
the
...
"highest
...
quality"
...
mappings
...
as
...
defined
...
by
...
that
...
application.
...
Because
...
the
...
values
...
are
...
map
...
set
...
and
...
application
...
specific
...
-
...
algorithms/decisions
...
used
...
are
...
use-case
...
specific.
...

1.4

...

Mapping

...

attributes

...

Any
...
information
...
about
...
a
...
mapping
...
than
...
what
...
directly
...
fits
...
the
...
“association”
...
object
...
model
...
will
...
be
...
rendered
...
as
...
attributes.
...
Hopefully
...
these
...
attributes
...
will
...
have
...
standard
...
names
...
across
...
different
...
types
...
of
...
map
...
set
...
loader.
...
In
...
other
...
words
...
– we
...
can
...
define
...
the
...
semantics
...
of
...
mapping
...
association
...
qualifiers
...
so
...
that
...
particular
...
ones
...
are
...
used
...
to
...
always
...
represent
...
the
...
same
...
aspect
...
of
...
some
...
kind
...
of
...
mapping
...
semantics.
...

2.

...

Searching

...

Scenarios

...

2.1

...

By

...

name

...

Find
...
mappings
...
where
...
the
...
"from"
...
code
...
has
...
a
...
name
...
matching
...
a
...
search
...
string
...
Find
...
mappings
...
where
...
the
...
"to"
...
code
...
has
...
a
...
name
...
matching
...
a
...
search
...
string
...
Find
...
mappings
...
where
...
the
...
"from"
...
code
...
has
...
a
...
name
...
matching
...
a
...
search
...
string
...
AND
...
the
...
target
...
concept
...
has
...
a
...
name
...
matching
...
a
...
different
...
string
...

2.2

...

By

...

code

...

like
...
by
...
name
...
but
...
for
...
matching
...
codes
...

2.3

...

Restrictions

...

Restrict
...
by
...
vocabulary
...
("from"
...
vocabulary,
...
"to"
...
vocabulary,
...
or
...
map
...
set
...
vocabulary)
...
Restrict
...
by
...
“current”
...
– only
...
retrieve
...
mappings
...
whose
...
endpoints
...
can
...
be
...
resolved
...
in
...
current
...
versions
...
of
...
terminologies
...
Restrict
...
by
...
cardinality
...
– e.g.
...
only
...
retrieve
...
1-1
...
mappings
...
(that
...
meet
...
other
...
criteria)
...
-
...
(1-1,
...
n-1,
...
1-n,
...
n-n)
...
Restrict
...
by
...
association
...
type
...
– e.g.
...
only
...
retrieve
...
“synonymous”
...
mappings
...

2.4

...

Default

...

Preferred

...

Names

...

In
...
some
...
cases
...
older
...
versions
...
of
...
map
...
sets
...
will
...
be
...
loaded
...
that
...
contain
...
"to"
...
or
...
"from"
...
codes
...
that
...
cannot
...
be
...
resolved
...
among
...
the
...
versions
...
of
...
loaded
...
vocabularies
...
In
...
this
...
case,
...
a
...
"default
...
preferred
...
name"
...
will
...
be
...
available
...
so
...
that
...
browsers
...
can
...
still
...
effectively
...
visualize
...
the
...
data.
...
This
...
default
...
name
...
could
...
be
...
indexed
...
so
...
that
...
searches
...
retrieve
...
these
...
results,
...
even
...
though
...
the
...
codes
...
no
...
longer
...
exist
...

3.

...

Browsing/Discovery

...

Scenarios

...

3.1

...

Grouping,

...

Categorization

...

How
...
authoritative
...
is
...
it?
...
Is
...
it
...
actively
...
maintained?
...
Does
...
it
...
connect
...
“current
...
version“
...
terminologies
...
loaded
...
into
...
LexEVS?
...
How
...
important
...
or
...
heavily
...
used
...
is
...
it?
...
What
...
“kind”
...
of
...
mapping
...
set
...
is
...
it
...
(i.e.
...
what
...
is
...
it
...
for)
...
Group
...
by
...
“from”
...
terminology
...
or
...
“to”
...
terminology
...

3.2

...

Selections

...

Pre-select
...
certain
...
map
...
sets
...
for
...
searching
...
based
...
on
...
well-defined
...
criteria
...

3.3

...

Misc

...

When
...
searching
...
across
...
multiple
...
map
...
sets,
...
consider
...
options
...
like
...
grouping
...
all
...
mappings
...
with
...
the
...
same
...
“from”
...
terminology
...
together
...
to
...
make
...
cognitive
...
task
...
easier.
...
Support
...
ability
...
to
...
identify
...
map
...
sets
...
that
...
are
...
“to”
...
or
...
“from”
...
a
...
particular
...
terminology
...
E.g.
...
get
...
all
...
map
...
sets
...
where
...
the
...
“from”
...
coding
...
scheme
...
is
...
NCI2010_07
...

4.

...

Presentation

...

Scenarios

...

4.1

...

Views

...

Map
...
Set
...
view
...
(including
...
all
...
known
...
metadata)
...
Map
...
Group
...
view
...
(where
...
needed)
...
– e.g.
...
one
...
“subset”
...
in
...
a
...
complex
...
rule-based
...
mapping.
...
Mappings
...
view
...
(sortable
...
table,
...
paging
...
capabilities).
...
Standard
...
column
...
headers
...
come
...
from
...
LexEVS
...
view.
...
Need
...
to
...
consider
...
“extended”
...
columns
...
that
...
may
...
not
...
apply
...
to
...
all
...
map
...
sets
...
(e.g.
...
MAP_RANK,
...
or
...
other
...
MRMAP
...
fields
...
like
...
MAPPRIORITY,
...
etc)
...
Individual
...
mapping
...
view
...
– link
...
"from"
...
and
...
"to"
...
codes
...
to
...
the
...
concept
...
pages
...
for
...
those
...
things
...
– may
...
not
...
need
...
this
...
“Mappings”
...
tab
...
on
...
concept
...
view
...
– render
...
all
...
mappings
...
“to”
...
or
...
“from”
...
that
...
concept
...
need
...
to
...
determine
...
which
...
map
...
sets
...
to
...
search
...
in
...
retrieve
...
this
...
info
...
only
...
when
...
user
...
actually
...
clicks
...
on
...
this
...
tab
...

4.2

...

Other

...

Considerations

...

Make
...
good
...
decisions
...
about
...
when
...
clicking
...
should
...
open
...
a
...
new
...
window
...
vs.
...
reload
...
in
...
the
...
same
...
page.
...
Support
...
a
...
“view
...
all
...
mappings”
...
function
...
for
...
simple
...
browsing
...
of
...
small
...
sets
...
(without
...
requiring
...
search).
...
Handling
...
expression-based
...
mappings
...
(may
...
need
...
to
...
parse
...
– can
...
do
...
based
...
on
...
grammar
...
or
...
“style”).
...
Consider
...
when
...
a
...
new
...
page
...
should
...
open
...
and
...
when
...
content
...
should
...
be
...
reloaded
...
in
...
the
...
current
...
tab/browser
...
window.
...

5.

...

Loader

...

Considerations

...

Need
...
to
...
specify
...
map
...
set
...
metadata
...
(switches
...
or
...
prefs
...
file)
...
Need
...
to
...
indicate
...
end
...
point
...
coding
...
schemes
...
for
...
“from”
...
and
...
“to“
...
codes.
...
If
...
we
...
know
...
they
...
cannot
...
be
...
resolved,
...
placeholder
...
names
...
for
...
endpoints
...
should
...
be
...
provided
...
and
...
loaded.
...
WARNING:
...
be
...
careful
...
using
...
Excel
...
to
...
export
...
to
...
CSV
...
because
...
of
...
conversion
...
things
...
like
...
“078.12”
...
to
...
“78.12”
...
Consider
...
loading
...
a
...
characterization
...
of
...
the
...
“type”
...
or
...
“category”
...
of
...
a
...
map
...
set
...
for
...
organization
...
in
...
a
...
list
...
and
...
pre-selection
...
(see
...
presentation)
...
Consider
...
how
...
many
...
map
...
sets
...
to
...
load
...
into
...
a
...
single
...
coding
...
scheme,
...
and
...
what
...
criteria
...
would
...
be
...
used
...
to
...
make
...
that
...
decision.
...
Handle
...
cases
...
where
...
we
...
know
...
the
...
"from"/"to"codes
...
cannot
...
be
...
resolved
...
due
...
to
...
different
...
versions
...
and
...
load
...
default
...
preferred
...
names.
...

6.

...

Obtaining

...

or

...

Generating

...

Data

...

6.1

...

Obtaining

...

MRMAP
...
data
...
from
...
UMLS
...
(e.g.
...
SNOMEDCT-ICD9CM)
...
CTCAE
...
3->4
...
mappings
...
Go/BiomedGT
...
Mappings
...
Identify
...
major
...
mapping
...
efforts,
...
start
...
gathering
...
data
...
– formats
...
can
...
drive
...
further
...
loader
...
considerations
...

6.2

...

Generating

...

Mappings

...

Data
...
sets
...
created
...
as
...
part
...
of
...
NCI-META
...
export
...
(e.g.
...
PDQ-NCIt)
...
Map
...
sets
...
generated
...
as
...
a
...
special
...
project
...
(e.g
...
NCIt
...
Neoplasms
...
to
...
SNOMEDCT)
...
On-demand
...
generation
...
of
...
mappings
...
from
...
an
...
integrated
...
terminology
...
resource
...
(like
...
UMLS
...
or
...
NCI-META).
...
Criteria-based
...
candidate
...
selection
...
Criteria-based
...
ranking
...
and
...
filtering
...
See
...
report
...
(posted
...
to
...
gforge)
...
API
...
performance
...
considerations.
...

7.

...

Maintenance

...

and

...

Legacy

...

Scenarios

...

It
...
may
...
be
...
important
...
to
...
know
...
what
...
map
...
sets
...
have
...
mappings
...
whose
...
"from"
...
or
...
"to"
...
codes
...
will
...
not
...
resolve.
...

Managing
...
versions:
...
“from”
...
coding
...
scheme,
...
“to”
...
coding
...
scheme
...
Map
...
set
...
coding
...
scheme
...
itself
...
Learn
...
what
...
we
...
need
...
to
...
from
...
various
...
mapping
...
maintenance
...
environments
...
about
...
authoring,
...
data
...
models,
...
visualization,
...
etc.
...
IHTSDO
...
stand-alone
...
tool
...
(and
...
eventual
...
workbench)
...
CogZ
...
(protégé
...
tool)
...
Oboedit
Ad-hoc
...
data
...
manipulation
...
Scrollbar
...
icons
...
false
...

Content

Space Tools

Page History

Versions Compared

Old Version 8

New Version Current

Key

Page info

titletitle

1. Object Model Considerations

1.1 Map Set

1.2

Group

of

Mappings

(a

mapping

subset,

or

search

results,

or

a

page

of

listings)

This ... is ... more ... sophisticated ... with ... complex ... rule-based ... map ... sets ... where ... a ... collection ... of ... mapping ... entries ... may ... actually ... represent ... only ... a ... single ... mapping....

1.3

Mapping

1.4

Mapping

attributes

2.

Searching

Scenarios

2.1

By

name

2.2

By

code

like ... by ... name ... but ... for ... matching ... codes...

2.3

Restrictions

2.4

Default

Preferred

Names

3.

Browsing/Discovery

Scenarios

3.1

Grouping,

Categorization

3.2

Selections

Pre-select ... certain ... map ... sets ... for ... searching ... based ... on ... well-defined ... criteria...

3.3

Misc

4.

Presentation

Scenarios

4.1

Views

4.2

Other

Considerations

5.

Loader

Considerations

6.

Obtaining

or

Generating

Data

6.1

Obtaining

MRMAP ... data ... from ... UMLS ... (e.g. ... SNOMEDCT-ICD9CM)...CTCAE ... 3->4 ... mappings...Go/BiomedGT ... Mappings...Identify ... major ... mapping ... efforts, ... start ... gathering ... data ...– formats ... can ... drive ... further ... loader ... considerations...

6.2

Generating

title
title

This
...
is
...
more
...
sophisticated
...
with
...
complex
...
rule-based
...
map
...
sets
...
where
...
a
...
collection
...
of
...
mapping
...
entries
...
may
...
actually
...
represent
...
only
...
a
...
single
...
mapping.
...

like
...
by
...
name
...
but
...
for
...
matching
...
codes
...

Pre-select
...
certain
...
map
...
sets
...
for
...
searching
...
based
...
on
...
well-defined
...
criteria
...

MRMAP
...
data
...
from
...
UMLS
...
(e.g.
...
SNOMEDCT-ICD9CM)
...
CTCAE
...
3->4
...
mappings
...
Go/BiomedGT
...
Mappings
...
Identify
...
major
...
mapping
...
efforts,
...
start
...
gathering
...
data
...
– formats
...
can
...
drive
...
further
...
loader
...
considerations
...