NIH | National Cancer Institute | NCI Wiki  

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

 

NBIA

NIAMS

XNAT Central

Image Data Archive

Function BIRN Data Repository

NIRL Imaging Database

Give A Scan

Optical Society of America (OSA)

Pediatric MRI Data Repository

Insight Journal




Supporting Institution(s)

Cancer Imaging Program, caBIG

NIAMS, caBIG

WUSTL, BIRN

Lab of NeuroImaging UCLA (LONI)

BIRN

BIRN

Lung Cancer Alliance

Optical Society of America

NIH, NDAR

Insight Journal




Content Type

In Vivo Cancer Imaging

Osteoarthritis

Biomedical images and meta data

ADNI (Alzheimers),
CRYO (histology),
ICBM (Brain mapping),
AIBL (Autralian Aging)

Brain scans

ELUDE (Elderly Depression),
MIRIAD (Depression)

Patient-contributed Medical scans

Optical

Normal brain development 

Biomedical images and meta data




Archive Software

NBIA

NBIA

XNAT

Image Data Archive

custom

XNAT

MIDAS

MIDAS

custom

MIDAS




Login account required

For advanced site features or limited access data sets, but is not required for accessing public data

Yes

For accessing limited access data sets, but not for public data

Yes, via email address.  Used only for providing links for downloading data.

 

For accessing limited access data sets, but not for public data

No

For accessing limited access data sets, but not for public data

Yes

For accessing limited access data sets, but not for public data




Explicit data sharing policy

Yes, with options for uploading fully open or limited access data sets

Yes, found here

No

 

 

 

 

 






Accepting new data

Yes, with approval from NCI CBIIT/CIP

 

Yes, users can register accounts and upload data

 

 

 

 

 






Central curation/review

Yes, performed by CBIIT/CIP staff

 

No

 

 

 

 

 






Availability/Uptime

~99%, hosted on a redundant production system at NCI CBIIT

 

 

 

 

 

 

 






Project- or Collection- based groupings?

Yes

Yes

Yes

 

 

Yes

Yes

Yes


Yes




Size of Current Volume

~3TB

 

 

 

 

 

 

 






number of DICOM Tags query-able

~90

~90

 

 

 

 

 

 

DICOM transfer protocol

For submission, but not download

For submission, but not download

 

 

 

 

 

 






methods to download DICOM data

Data submission/download methods

Submission via DICOM or HTTPS protocols using CTP. Download via Web (zip), FTP, Java Webstart client

Submission via DICOM or HTTPS protocols. Download via Web (zip), FTP, Java Webstart client

 

 

 

 

Submission via Web UI or DICOM protocol.  Download via Web (zip) or Java applet.

 

 

 

 

 






Helpdesk Support

Yes, CBIIT Application Support

Yes, CBIIT Application Support

 

 

 

 

 

 

 

 

 

 

 

Affiliation with Journal

No

No

No

 

 

 

 

 






...

 

NBIA

XNAT

MIDAS


 

 

Interface/GUI

Web

Web

Web

 

 

 

Query types/flexibility

Simple (9 parameters), Advanced (10 more parameters), Dynamic (boolean query of up to 90 DICOM tags)

Limited subset of DICOM tags out of the box but is highly configurable for adding the ability to query on just about any kind of meta data you wish to provide

 

 

 

 

Role Based Security

Yes

Yes

Yes

 

 

 

Public access option (no login req)

Yes

Yes

Yes

 

 

 

Active Development

Yes, NCI CBIIT

Yes, WUSTL Neuroinformatics Research Group

Yes, Kitware

 

 

 

Supports Federated Implementation

Yes, can discover other nodes on the caGrid

Not currently, but there are plans to add this functionality eventually

No

 

 

 

API available

Yes, caGrid

Yes, ?RESTFUL web services?

 

 

 

 

Supported image formats

DICOM

 

 

 

 

 

Supported metadata formats

XML, Zip

 

 

 

 

 

Transfer protocols (import/export)

DICOM, HTTPS

 

 

 

 

 

Controlled Vocabulary

caBIG

 

 

 

 

 

Deployment Support

Yes, CBIIT Application Support or via NBIA User Listserv

 

 

 

 

 

Support Operating Systems

Linux, Mac, Windows

Linux, Windows

 

 

 

 

Data submission options

Submission to NBIA is performed by a java tool called CTP developed out of RSNA.  CTP has options to import data from HDD or directly from a PACS or DICOM Workstation.

Direct upload is available through the web UI, direct DICOM transfer, or one could utilize the DICOM Browser java tool.

 

 

 

 

Standard of De-Identification

Incorporates S142 standards via CTP profiles  

No, but scripts based on standards could be written for DICOM Browser if desired

 

 

 

 

Support for multi-site submissions

Yes

Yes

Yes

 

 

 

...