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  1. Begin uploading your ISA-Tab file by creating a project in CSSI DCC and selecting a file. For more information on this process, go to Uploading ISA-Tab Files.

  2. On the Upload ISA TAB Files page, click Upload with Globus button.
    If you have not yet logged into Globus, a log in page appears.
    Log in to use Globus web app

    Info
    titleGlobus Documentation and Support

    For more information about using Globus, consult their documentation 

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    and/or support
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    .

    After you successfully log in, the Globus Transfer Files page appears. One of the Endpoints you configured is already populated, though you can change it.
    Globus Transfer Files page

  3. Select the starting endpoint (on the left) where the file(s) you want to upload reside(s). Narrow down to the path if necessary.

  4. Confirm or change the destination endpoint (on the right).

  5. Click the right arrow button that points to the destination to begin the transfer request.
    A message appears on the screen when the transfer request is submitted successfully. You receive an email when the request is granted and the transfer succeeds.
    Globus Transfer Files page, transfer request submitted successfully

    Once an administrator approves the upload request, the uploaded, unpublished file appears in the Investigation Projects section of the page.

  6. Since you have not yet published the uploaded file, you must publish it to use it in CSSI DCC. 
    Upload ISA TAB Files, Investigation Projects section

Publishing ISA-Tab Files to the CSSI DCC

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Portal

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Publishing

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ISA-Tab

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If you have uploaded multiple versions of the file to the project, decide which version of the ISA-Tab file you want to publish to CSSI DCC.   

Click the Preview button next to that version.

Project page showing the Preview button next to version 1Image Removed

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Review the uploaded file by exploring the investigation details. If you are satisfied with the content of this version, request its publication by clicking Publish this Version. If you are not satisfied or the upload generated an error, click Return to go back to your project and upload a new version of the ISA-Tab file.

Info
titleUpload Errors

You may encounter an upload error. A sample error message follows:

Missing Data Files: File processed successfully. 1 files referenced in the assay(s) were not found. Click here to view the missing file lists (limited to 1000 entries each).

The CSSI DCC Portal validates uploaded ISA-Tab files using standards and conventions described in the ISA-Tab specification 

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 . The ISA tools site
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 provides additional technical information about validating ISA-Tab files.

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Files to the CSSI DCC Portal
Publishing ISA-Tab Files to the CSSI DCC Portal

Viewing Publish History

The first time you upload an ISA-Tab file to a new project, it is the first version of that file.

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