NIH | National Cancer Institute | NCI Wiki  

Versions Compared

Old Version 8

changes.mady.by.user Bauer, Scott (NIH/NCI) [C]

Saved on

compared with

New Version 9

changes.mady.by.user Bauer, Scott (NIH/NCI) [C]

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Code Block
languagejava
getMinimalSourceAssertedValueSetSchemes()

 

 

Description:

Lists all coding schemes – no entities resolved

Input:

none

Output:

List<CodingScheme>

Exception:

LBException

Implementation Details:

Implementation:
Step 1: Call this method on the associated LexEVS Asserted Value Set service instance to list a full set of coding schemes along with all of their entities
Sample Call:

  • Step 1:Instantiate SourceAssertedValueSetService if it is not done yet:

    Code Block
    org.lexgrid.valuesets.SourceAssertedValueSetServiceImpl  assVSServ = new SourceAssertedValueSetServiceImpl(new AssertedValueSetParameters.Builder().build());

  • Step 2: List all the coding scheme representations of the value sets

    Code Block
    List<CodingScheme> schemes = assVSService.getMinimalSourceAssertedValueSetSchemes();

     

     

Coding Scheme Read Functions

  • Get value sets by concept reference - Input an object that matches namespace and unique code of a value set member to return a list of containing schemes
  • Get value sets by entity code - input is entity code only, no namespace is defined to read the value set that contains this as a value set member
  • Get a single value set for its unique URI - The input should be an unique identifier for a coding scheme representation of a value set in the system
  • Get a value set or value sets defined by a unique entity - The input is a unique entity code that identifies the top node of a given value set
  • Get scheme references for a coding scheme representation - Pulls from a coding scheme those schemes from which the entities of the coding scheme representation of the value set is derived.

Get Value Sets by Concept Reference

Code Block
languagejava
getSourceAssertedValueSetsForConceptReference(ConceptReference ref)

Description:

Lists all coding schemes containing a particular concept reference

Input:

ConceptReference ref - Configurable to contain both the unique identifier and the namespace of the target coding scheme (both are tied to the asserting source in this case)

Output:

List<CodingScheme>

Exception:

none

Implementation Details:

Implementation:
Step 1: Call this method on the associated LexEVS Asserted Value Set service instance to list a full set of coding schemes along with all of their entities
Sample Call:

  • Step 1:Instantiate SourceAssertedValueSetService if it is not done yet:

    Code Block
    org.lexgrid.valuesets.SourceAssertedValueSetServiceImpl  assVSServ = new SourceAssertedValueSetServiceImpl(new AssertedValueSetParameters.Builder().build());

  • Step 2: Construct the ConceptReference object:

    Code Block
    ConceptReference ref = new ConceptReference();
ref.setConceptCode("C1234");
ref.setCodeNamespace("ncit");

  • Step 3: List all the coding scheme representations of the value sets

    Code Block
    List<CodingScheme> schemes = getSourceAssertedValueSetsForConceptReference(ref)

Resolved Concept Reference Read Functions

...