Page History
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ActivateScheme | Activates a coding scheme based on unique URN and version.
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CleanUpMetadata | Clean up metadata entries that are orphaned. Options: -h, --help, Prints usage information -f,--force, Force removal without prompting of metadata that doesn't have a corresponding coding scheme entry(orphaned). Example:
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DeactivateScheme | Deactivates a coding scheme based on unique URN and version.
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ListExtensions | List registered extensions to the LexEVS runtime environment.
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ListSchemes | List all currently registered vocabularies.
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LoadManifest | Load manifest data onto the codingscheme based on unique URN and version. Options: -u,--urn "urn"; URN uniquely identifying the code system. -v,--version "versionId"; Version identifier. -mf,--manifest "manifest"; location of manifest xml file.
Note: If either the URN or the version values are unspecified, a list of available coding schemes will be presented for user selection. Example:
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RemoveTagScheme | Removes a tag ID (e.g. 'PRODUCTION' or 'TEST') from a coding scheme URN and version. Options: -u,--urn <urn> URN uniquely identifying the code system. -v,--version <id> Version identifier.
Note: If the URN and version values are unspecified, a list of available coding schemes will be presented for user selection. Example:
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RemoveVSResolvedFromCodingScheme | Removes a resolved ValueSet based on coding scheme and version that was used for its resolution.
Options: -l, List of coding scheme versions to match when removing the ResolvedValueSet. -f,--force Force de-activation and removal without confirmation. Example:
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RemoveResolvedValueSet | Removes a resolved ValueSet Options: -l, The list of resolved value sets to remove, separated by comma. format "resolvedValueSetUri1::version1, resolvedValueSetUri2::version2,...". -f,--force Force de-activation and removal without confirmation.
Load Example:
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RemoveValueSetDefinition | Removes a coding scheme based on unique URN and version. Options: -u,--urn <urn> URN uniquely identifying the code system.
Note: If the URN and version values are unspecified, a list of available coding schemes will be presented for user selection. Example: | ||
TagScheme | Associates a tag ID (e.g. 'PRODUCTION' or 'TEST') with a coding scheme URN and version.
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SupplementScheme | Utility to register, unregister, and list Coding Scheme Supplements. Usage: SupplementScheme [-r] [-u] [-l] [-parentUri parentUri] [-parentVersion parentVersion] [-supplementUri supplementUri] [-supplementVersion supplementVersion]
-r Register Coding Scheme as a Supplement -u Unregister Coding Scheme as a Supplement -l,--list List Supplements -parentUri <parentUri> Parent URI. -parentVersion <parentVersion> Parent Version. -supplementUri <supplementUri> Supplement URI. -supplementVersion <supplementVersion>Supplement Version.
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Lucene Index Administration
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LoadPickListDefinition | Loads Pick List Definition content, provided in LexGrid canonical xml format.
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LoadAllDefinitionsToResolvedValueSet | Loads All Value Set Definitions for a given uri as resolved coding scheme.
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LoadValueSetDefinition.sh | Loads Value Set Definition content, provided in LexGrid canonical xml format. Options:
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SourceAssertedResolvedValueSetLoad | Loads all source asserted Value Sets from a given source. Options: -cs, --codingScheme, usage="Name of Coding Scheme that asserts values sets" -v, --version, usage="Version of the coding scheme." -a, --association, usage="Relationship name asserted by the codingScheme") -t", --target", usage="Target to Source resolution.") -uri", --uri", usage="Base uri to build the conding scheme uri upon") -o", --owner", usage="Owener of the value set assertioin") -s", --sourceName", usage="Gives the name of the property to resolve the source value against") Load Example:
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SourceAssertedValueSetDefinitionLoad | Loads all source asserted Value Sets from a given source. Options: -cs, --codingScheme, usage="Name of Coding Scheme that asserts values sets" -v, --version, usage="Version of the coding scheme." -a, --association, usage="Relationship name asserted by the codingScheme" -t", --target", usage="Target to Source resolution." -uri", --uri", usage="Base uri to build the conding scheme uri upon" -o", --owner", usage="Owener of the value set assertioin" -s", --sourceName", usage="Gives the name of the property to resolve the source value against" -cd, --conceptDomainName" usage= "Gives the name of the property to resolve the concept domain value against" Load Example:
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Expert Admin Scripts (Focused on Mass Loads of Value Sets)
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