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ActivateScheme

Clean up metadata entries that are orphaned.

Options:

   -h, --help, Prints usage information

   -f,--force, Force removal without prompting of metadata that doesn't have a corresponding coding scheme entry(orphaned).

Example:

DeactivateScheme

ListExtensions

ListSchemes

List all currently registered vocabularies.
Options:

• -b,-brief List only coding scheme name, version, urn, and tags (default).
• -f,-full List full detail for each scheme.
  
  Example: ListSchemes

Load manifest data onto the codingscheme based on unique URN and version.

Options:

   -u,--urn "urn"; URN uniquely identifying the code system.

   -v,--version "versionId"; Version identifier.

   -mf,--manifest "manifest"; location of manifest xml file.

Note: If either the URN or the version values are unspecified, a list of available coding schemes will be presented for user selection.

Example:

Removes a tag ID (e.g. 'PRODUCTION' or 'TEST') from a coding scheme URN and version.

Options:

   -u,--urn <urn> URN uniquely identifying the code system.

   -v,--version <id> Version identifier.

Note: If the URN and version values are unspecified, a list of available coding schemes will be presented for user selection.

Example:

Removes a resolved ValueSet based on coding scheme and version that was used for its resolution.

Options:

   -l, List of coding scheme versions to match when removing the ResolvedValueSet.

   -f,--force Force de-activation and removal without confirmation.

Example:

Removes a resolved ValueSet

Options:

   -l, The list of resolved value sets to remove, separated by comma. format "resolvedValueSetUri1::version1, resolvedValueSetUri2::version2,...".

   -f,--force Force de-activation and removal without confirmation.

Load Example:

Removes a coding scheme based on unique URN and version.

Options:

   -u,--urn <urn> URN uniquely identifying the code system.

Note: If the URN and version values are unspecified, a list of available coding schemes will be presented for user selection.

Example:

TagScheme

Utility to register, unregister, and list Coding Scheme Supplements.

Usage: SupplementScheme  [-r] [-u] [-l]

   [-parentUri parentUri]

   [-parentVersion parentVersion]

   [-supplementUri supplementUri]

   [-supplementVersion supplementVersion]

   -r  Register Coding Scheme as a Supplement

   -u Unregister Coding Scheme as a Supplement

   -l,--list List Supplements

   -parentUri <parentUri> Parent URI.

   -parentVersion <parentVersion> Parent Version.

   -supplementUri <supplementUri> Supplement URI.

   -supplementVersion <supplementVersion>Supplement Version.

Example:

• SupplementScheme -u -parentUri "urn:oid:2.16.840.1.113883.3.26.1.1" -parentVersion "05.09e" -supplementUri "http://supplement.ontology.org" -supplementVersion "1.0.1"

LoadPickListDefinition

LoadAllDefinitionsToResolvedValueSet

Loads Value Set Definition content, provided in LexGrid canonical xml format.

Options:

• -in, Input <uri> URI or path specifying location of the source file.
• -v, Validate <int> Perform validation of the candidate

  resource without loading data.  Supported levels of validation include:

     0 = Verify document is well-formed

     1 = Verify document is valid

  
  Load Example:

   

  LoadValueSetDefinition -in "file:///path/to/file.xml"

Loads all source asserted Value Sets from a given source.

Options:

   -cs, --codingScheme, usage="Name of Coding Scheme that asserts values sets"

   -v, --version, usage="Version of the coding scheme."

   -a, --association, usage="Relationship name asserted by the codingScheme")

   -t", --target", usage="Target to Source resolution.")

   -uri", --uri", usage="Base uri to build the conding scheme uri upon")

   -o", --owner", usage="Owener of the value set assertioin")

   -s", --sourceName", usage="Gives the name of the property to resolve the source value against")

 Load Example:

Loads all source asserted Value Sets from a given source.

Options:

   -cs, --codingScheme, usage="Name of Coding Scheme that asserts values sets"

   -v, --version, usage="Version of the coding scheme."

   -a, --association, usage="Relationship name asserted by the codingScheme"

   -t", --target", usage="Target to Source resolution."

   -uri", --uri", usage="Base uri to build the conding scheme uri upon"

   -o", --owner", usage="Owener of the value set assertioin"

   -s", --sourceName", usage="Gives the name of the property to resolve the source value against"

   -cd, --conceptDomainName" usage= "Gives the name of the property to resolve the concept domain value against"

Load Example:

Loads all source asserted Value Sets from a given source.
 
Options:
  -cs  -codingScheme - Name of Coding Scheme that asserts values sets
   default "NCI_Thesaurus"

  -pv --pversion - Previous version of the coding scheme.
   Optional default none

  -cv --cversion - Version of the coding scheme. User must input a current version.
   default none;

  -a --association - Relationship name asserted by the codingScheme.
   default association = "Concept_In_Subset";

  -t --target - Target to Source resolution.
   default target = "true";

  -uri --uri - Base uri to build the value set coding scheme uri upon.  
   defaul uri = "http://evs.nci.nih.gov/valueset/";

  -o --owner - Owner of the value set assertion.
   default owner="NCI";

  -s --sourceName - Gives the name of the property to resolve the source value against.
   default source = "Contributing_Source";

  -cd --conceptDomainName - Gives the name of the property to resolve the concept domain value against.
   defaultconceptDomainIndicator = "Semantic_Type";

  -sUri --schemeUri - Scheme Uri for the coding scheme containing the value set updates.
   defaultschemeUri = NCItSourceAssertedValueSetUpdateService.NCIT_URI;

Load Example: