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The NCI Data Management Environment (DME) platform supports the High Performance Computing (HPC) program of the National Cancer Institute (NCI). This user guide describes how to use DME.  offers open-ended storage and management of scientific research datasets. It eliminates the need to maintain redundant copies of large heterogenous data and provides the ability to annotate, retrieve, and share datasets for further research, analysis, and collaboration.

The NCI Data Vault serves as the archive store for these datasets. It provides scalable, virtualized, high-reliability storage that is transparent to the end user. Data are stored as objects, which are organized into collections (folders), and a collection might have one or more collections within it. A collection can be identified by a custom collection type such as Project, Study, Sample, and so on, the default being Folder.

DME provides an entry point to archive data to the NCI Data Vault, and to manage, transfer, access, and share data across disparate systems securely and efficiently. DME allows you to associate user-defined metadata to registered data at different points in the data life cycle. In addition, DME offers search capabilities to identify this data. A Division/Office/Center (DOC) can define its own metadata structure and data hierarchy rules, and grant permission to users as needed.

If you have an NIH account, the NCI Data Vault team can give you access to DME. For access requests or any other questions, For questions, please contact NCIDataVault@mail.nih.gov.

note

 

This user guide

is a work in progress.

Contents

describes the capabilities of DME. In some cases, you can choose whether to perform each activity using the web application's graphical user interface (GUI) or Command Line Utilities (CLU). 

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Consider searching within or browsing this

You can search within or browse this

user guide:

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DME User Guide
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titleNarrated Demonstration Slides

Preparing to Use Globus

Downloading to a Globus Endpoint via the GUI

Registering from a Globus Endpoint via the GUI

Registering from an AWS S3 Bucket via the GUI

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titleDME REST API Specification

https://github.com/CBIIT/HPC_DME_APIs/blob/master/doc/guides/HPC_API_Specification.docx

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titleExport User Guide

To export all or part of this user guide to a PDF file,

click the following link:

https://wiki.nci.nih.gov/spaces/flyingpdf/flyingpdf.action?key=DMEdoc

visit the Export PDF Options page for this wiki space. For detailed instructions, refer to

Confluence Support

the following Atlassian help page:

https://confluence.atlassian.com/

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