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1. Log in to the CSSI DCC Portal.
2. Select Investigations > Upload.
   The Upload ISA TAB Files page appears.
   

3. Click New Project.
   The Project Properties page appears.

   Info
   A project is simply a container for the ISA-Tab file. It allows you to track multiple versions of ISA-Tab file uploads to this project. It is a best practice for each investigation to have its own project.

   
   
   

4. Enter a title for your new project. Note that this title and that of the ISA-Tab file that the project contains can be different.

5. Click Save Project.
   The new project is listed under Investigation Projects.
   

   Info
   If the File Upload section of the page is not visible, click Open next to the project name to show it.

   
   
   

   Info
   title Changing the Project Name
   If needed now or later, click Edit to change the project name. Depending on your privileges, you may not see the Delete button.

6. Select the file you want to upload to this project in one of the following ways:

   • Drag and drop the ISA-Tab archive file from your computer to the Drop your files here box surrounded by the dashed lines:
     

   • Click the Drop your files here box image and browse to where the file is stored.
     The file is listed in the File Upload area and the status is listed as Ready.

7. If the file is smaller than 10 GB, click Upload selected files. If the file is larger than 10 GB, use Globus instead. 

   The file begins processing and the status moves through the following stages:

   • Uploading
   • Processing Queued    
   • Queued
   • Preparing uploaded files
   • Parsing ISA TAB Metadata    
   • Preparing Data Files    
   • Validating assay files and file sizes    
   • File processed successfully    

   • Success: file processed successfully  

   Once an administrator approves the upload request, the uploaded file appears as a new project version in the Investigation Projects section of the page. It is not yet published, so you must now preview and publish publish it to use it in CSSI DCC. For instructions on previewing and publishing it, refer to Publishing ISA-Tab Files to the CSSI DCC Portal.
   

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1. Begin uploading your ISA-Tab file by creating a project in CSSI DCC and selecting a file. For more information on this process, go to Uploading ISA-Tab Files.

2. On the Upload ISA TAB Files page, click .
   If you have not yet logged into Globus, a log in page appears.
   
   

   Info
   title Globus Documentation and Support
   For more information about using Globus, consult their documentation   Multiexcerpt include MultiExcerptName ExitDisclaimer nopanel true PageWithExcerpt wikicontent:Exit Disclaimer to Include and/or support Multiexcerpt include MultiExcerptName ExitDisclaimer nopanel true PageWithExcerpt wikicontent:Exit Disclaimer to Include .

   After you successfully log in, the Globus Transfer Files page appears. One of the Endpoints you configured is already populated, though you can change it.
   
   

3. Select the starting endpoint (on the left) where the file(s) you want to upload reside(s). Narrow down to the path if necessary.

4. Confirm or change the destination endpoint (on the right).
   

5. Click the right arrow button that points to the destination to begin the transfer request.
   A message appears on the screen when the transfer request is submitted successfully. You receive an email when the request is granted and the transfer succeeds.
   
   
   Once an administrator approves the upload request, the uploaded, unpublished file appears in the Investigation Projects section of the page.
   

6. Since you have not yet published the uploaded file, you must publish it to use it in CSSI DCC. For instructions on previewing and publishing it, refer to Publishing ISA-Tab Files to the CSSI DCC Portal.
   
   

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