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This guide explains how to do the following tasks in caMicroscope:
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Using caMicroscope
caMicroscope allows you to view whole-slide images and nuclear segmentations.
Opening caMicroscope
- Use the Chrome browser to navigate to https://wolf.cci.emory.edu/vtr_pending.
The Sign In page appears. - Use your Google credentials to sign in to caMicroscope.
The caMicroscope site appears. - Select which database of images you want to view by clicking either the large slide image or the More button. Databases include Breast Cancer Genomic Pilot, Virtual Tissue Repository (VTR) Pending, and Pancreatic Ductal Adenocarcinoma (PDAC).
A table appears that lists all whole-slide images for the selected database that you are authorized to view. In the table, click the Open button for any row.
The slide opens in caMicroscope.Note
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To select a different image, click the Back button in your browser to return to the table.
Using the caMicroscope Toolbar
The following buttons on the toolbar launch features described in this guideUse the toolbar buttons to manipulate the slide.
Tool | Name | Purpose | ||||||||
Home | Return to the caMicroscope home page. | Lymphocyte & Plasma Cell App | Launch the Lymphocyte & Plasma Cell App within caMicroscope. For more information, see page 6. | Segment Curation App | Launch the Segment Curation App within caMicroscope. For more information, see page 7. | Filter Markups | View only those markups associated with selected algorithms. For more information, see page 8. | Image Analysis | Not yet available. | |
Zooming In and Out
To zoom in on the image, click the main content window with your mouse. Each time you click, the view zooms in further, the scale updates, and the bounding box in the inset window changes to show how much of the total image is in the main content window. When you are zoomed in very far, the bounding box may not be visible. Zooming out reverses this process.
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To Zoom Out: Press and hold the Shift key while you click on the main window.
Zoomed in:
Zoomed out:
Panning an Image
Panning allows you to move the image inside the window.
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