caMicroscope is a tool to view, annotate, and analyze biomedical images. It consists of a set of web services to manage digital pathology images, associated clinical and imaging metadata, and human/machine generated annotations and markups. It also allows you to view and analyze nuclear segmentations of images. caMicroscope hosts whole-slide, cancer tissue images for review by pathologists.

FeatureScape provides interactive representations of feature landscapes. Use FeatureScape to explore slide-level imaging features generated by analysis of whole slide tissue images to QuIP.

This guide explains how to do the following tasks in caMicroscope:

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1. Click the Filter Markups button.
   The Select Algorithm box appears.
2. Click the box to the left of each algorithm you want to select.
   caMicroscope runs the algorithm(s) against each image in the dataset. This can take some time. The markups appear in the color noted in the Select Algorithm box. You may have to zoom in and pan the image to see all markups.

Using FeatureScape

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Analyzing Images

To analyze images

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