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Tool

Name

Purpose

Annotations

Opens the Annotations panel, where you can select which annotation set to view, name that annotation set, add optional notes about the annotation set, save the annotation set, and reset the panel to its original state.

Annotation panel showing AnnotSchema open, an Identity Name text box, a Notes field, Reset button, and Save button

Layer Manager

Opens the Layers Manager panel, where you can select which layers to view.

Home

Return to the data table so that you can open another slide.

Draw

Draw thin lines, thick lines, or polygons on the image. To maintain the integrity of measurements, avoid drawing shapes that overlap or intersect one another.

MagnifierThe Magnifier works like a magnifying glass and allows you to see the slide at normal magnification (1.0), low magnification (0.5), or high magnification (2.0). Click a magnification level and place the bounding box on the area of the slide you want to magnify.

Measurement

Drag this tool on the slide to learn the measurement in micrometers.

An portion of a slide showing a measurement of 3.373 micrometers. A line separates the start and end points of the measurement.

Share ViewOpens a window with a URL to the current presentation state of the slide including the magnification level, layers that are currently open, and your position on the image.

Side by Side ViewerShows the Layer Manager panel, the left and right layers, and inset window. For the right and left layer, select which layer you want to view.

Heatmap

For a slide with heatmap data, opens the choices of heatmaps available, as well as ways of displaying the heatmaps. The gradient shows all of the values on the selected spectrum for the field you selected.

Slide showing a heat map on top of the original slide image. A shorter toolbar is at the top left that is customized for use with heat maps and described in this table.

Slides with heatmaps have three custom tools in the toolbar.

  • Edited Data List tool buttonImage Modifiedopens the Edited Data List. Information appears here if the slide has been edited using the HeatMap Editor tool, described below.
  • Heatmap settings tool buttonImage Added Heatmap settings tool buttonImage Removed opens the Heatmap Settings window, where you can turn the gradient display on and off and adjust the property of the gradient. By default, both lymphocyte and necrosis concentrations appear in the heatmap.
    • If you choose to turn the gradient display on by clicking the checkbox, you can choose to display either the lymphocyte or necrosis heatmap by itself.
    • If you display the lymphocyte gradient, you can set its property between 0 and 1.
    • If you display the necrosis gradient, its property is fixed at 1.
  • HeatMap Editor tool buttonImage Added opens the HeatMap Editor.
    Image Added
    • Select an operation from the list. Each edits the heatmap to show that operation, lym-positive, lym-negative, necrosis-positive, and necrosis-negative, in the specified color.

Labeling

Use this tool to draw a circle or rectangle around a tumor region, measure an area on the slide, download labels, and submit a bug report. The Labeling tool has its own toolbar with tools in the following order from left to right: return to the previous slide, draw a rectangle, draw a circle, measure an area, download labels, and submit a bug report. Click the left arrow at the far right of the toolbar to hide it, then click the right arrow to show it.

Labeling toolbar with icons that have the functions described in the previous sentence.Image Modified

  • Previous slide tool buttonImage Added returns you to the previous slide.
  • Image Added allows you to draw a rectangle around a region on the slide.

Segment

Bug ReportOpens a Google Form where you can describe the issue you have experienced.

Reviewed

Click this button after reviewing a slide to change its review status, then confirm the change. A green checkmark appears in the data table for this slide after you have marked it as reviewed.