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A Tomcat version 7.X must be downloaded and installed for the NBIA installation to work successfully. Generally the latest version of Tomcat 7 will have the latest fixes, NBIA has been tested with 7.0.85. Installing Tomcat is beyond the scope of this document. For more information, refer to Tomcat 7 Installation Guide . Note the installation directory of the Tomcat server and use it to set the TOMCAT_HOME and gov.nih.nci.ncia.tomcat.home in the properties.
See Configuring Tomcat Servers and MySQL Server to Run as Services if you want to run Tomcat as a service.