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Highlights of caArray 2.5.0
...
released
...
in
...
July,
...
2012
...
- User
...
- enhancements
...
- Improved
...
- large
...
- data
...
- support
...
- Large
...
- datasets
...
- can
...
- now
...
- be
...
- imported
...
- together
...
- –
...
- it
...
- is
...
- no
...
- longer
...
- necessary
...
- to
...
- split
...
- large
...
- imports
...
- into
...
- smaller
...
- subsets.
...
- Large
...
- datasets
...
- can
...
- be
...
- uploaded
...
- easily
...
- via
...
- multiple
...
- file
...
- selection,
...
- drag
...
- and
...
- drop.
...
- (not
...
- supported
...
- in
...
- Internet
...
- Explorer)
...
- Audit
...
- logging
...
- of
...
- sample
...
- and
...
- data
...
- additions
...
- and
...
- deletions
...
- Ability
...
- to
...
- restrict
...
- access
...
- to
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- samples
...
- based
...
- on
...
- sample
...
- characteristics
...
- Support
...
- for
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- automatic
...
- refresh
...
- of
...
- experiments
...
- from
...
- caIntegrator
...
- by
...
- providing
...
- information
...
- about
...
- sample
...
- and
...
- data
...
- changes.
...
- Ability
...
- to
...
- configure
...
- single
...
- sign-on
...
- between
...
- caArray
...
- and
...
- caIntegrator.
...
- Technical
...
- enhancements
...
- Improved
...
- file
...
- storage:
...
- Uploaded
...
- files
...
- are
...
- now
...
- stored
...
- on
...
- the
...
- file
...
- system
...
- instead
...
- of
...
- in
...
- the
...
- database.
...
- A
...
- plugin
...
- architecture
...
- allowing
...
- the
...
- user
...
- community
...
- to
...
- develop
...
- and
...
- deploy
...
- parsers
...
- for
...
- new
...
- data
...
- types
...
- easily.
...
- Major
...
- technology
...
- upgrades:
...
- Jboss
...
- 5.1,
...
- Java
...
- 6,
...
- caGrid
...
- v1.5,
...
- Struts
...
- 2.3.1.5,
...
- and
...
- NCI
...
- build-and-deploy
...
- infrastructure
...
- (NCI
...
- Nexus
...
- repository,
...
- AntHill
...
- Pro
...
- 3,
...
- BDALite).
...
For
...
more
...
information
...
refer
...
to
...
the
...
...
...
.
Highlights of caArray 2.4.1
...
released
...
on
...
10/3/2011
...
- The
...
- 2.4.1
...
- release
...
- (
...
...
...
...
...
- )
...
- addresses
...
- the
...
- following
...
- issues:
...
- Visibility
...
- into
...
- the
...
- queue
...
- of
...
- import
...
- and
...
- validation
...
- jobs,
...
- and
...
- where
...
- your
...
- job
...
- is
...
- in
...
- relation
...
- to
...
- other
...
- jobs
...
- in
...
- the
...
- system.
...
- Ability
...
- to
...
- cancel
...
- a
...
- queued
...
- job.
...
- Search
...
- for
...
- experiments
...
- by
...
- publication
...
- author
...
- or
...
- PubMed
...
- ID.
...
- Organisms
...
- are
...
- now
...
- restricted
...
- to
...
- terms
...
- from
...
- the
...
- NCBI
...
- Taxonomy.
...
- Bug
...
- fix
...
- to
...
- allow
...
- proper
...
- import
...
- of
...
- Agilent
...
- array
...
- design
...
- files
...
- where
...
- the
...
- chromosome
...
- name
...
- is
...
- not
...
- in
...
- a
...
- strictly
...
- numeric
...
- or
...
- X/Y
...
- format.
...
- The
...
- installer
...
- no
...
- longer
...
- depends
...
- on
...
- an
...
- internet
...
- connection.
...
- Fix
...
- to
...
- bug
...
- where
...
- experiments
...
- with
...
- multiple
...
- array
...
- designs
...
- may
...
- cause
...
- copy
...
- number
...
- data
...
- to
...
- get
...
- imported
...
- as
...
- "Imported
...
- (Not
...
- Parsed)".
...
Highlights
...
of
...
caArray
...
2.4.0.2
...
released
...
on
...
2/17/2011
...
- The
...
- 2.4.0.2
...
- release
...
- (
...
...
...
...
...
- )
...
- addresses
...
- the
...
- following
...
- issues
...
- with
...
- the
...
- 2.4.0
...
- release:
...
- Fixes
...
- an
...
- error
...
- which
...
- causes
...
- copy
...
- number
...
- data
...
- to
...
- not
...
- parse.
...
- Addresses
...
- issues
...
- recently
...
- found
...
- with
...
- 2.4.0
...
- installers.
...
Highlights
...
of
...
caArray
...
2.4.0.1
...
released
...
on
...
1/6/2011
...
- The
...
- 2.4.0.1
...
- release
...
- addresses
...
- the
...
- following
...
- issues
...
- with
...
- the
...
- 2.4.0
...
- release:
...
- Fixes
...
- occasional
...
- out-of-memory
...
- errors
...
- with
...
- the
...
- parsers.
...
- Addresses
...
- null
...
- pointer
...
- exception
...
- in
...
- the
...
- upgrade
...
- installer.
...
- Adds
...
- probe
...
- name
...
- validation
...
- to
...
- the
...
- data
...
- file
...
- parsers.
...
- Adds
...
- a
...
- security
...
- patch
...
- to
...
- Struts
...
- 2.1.x.
...
- Correctly
...
- validates
...
- Genepix
...
- GAL
...
- array
...
- designs
...
- with
...
- non-integer
...
- block
...
- header
...
- information.
...
Highlights
...
of
...
caArray
...
2.4.0
...
released
...
on
...
9/21/2010
...
- This
...
- release
...
- represents
...
- a
...
- feature
...
- release
...
- of
...
- the
...
- caArray
...
- 2
...
- software.
...
- Highlights
...
- of
...
- caArray
...
- 2.4.0
...
- are:
...
- Agilent
...
- raw
...
- TXT
...
- for
...
- aCGH,
...
- expression
...
- and
...
- miRNA
...
- assays
...
- Agilent
...
- GEML/XML
...
- array
...
- designs
...
- Nimblegen
...
- pair
...
- Report
...
- TXT
...
- (raw
...
- and
...
- normalized)
...
- Nimblegen
...
- NDF
...
- array
...
- designs
...
- Illumina
...
- Sample
...
- Probe
...
- Profile
...
- TXT
...
- Illumina
...
- genotyping
...
- processed
...
- data
...
- matrix
...
- TXT
...
- Illumina
...
- BGX/TXT
...
- array
...
- designs
...
- Affymetrix
...
- CEL
...
- and
...
- CHP
...
- in
...
- AGCC/Calvin
...
- formats
...
- in
...
- addition
...
- to
...
- the
...
- GCOS
...
- formats
...
- Affymetrix
...
- CNCHP
...
- copy
...
- number
...
- data
...
- (CN4
...
- and
...
- CN5)
...
- Copy
...
- Number
...
- data
...
- in
...
- a
...
- prescribed
...
- MAGE-TAB
...
- Data
...
- Matrix
...
- format.
...
- If
...
- you
...
- have
...
- copy
...
- number
...
- data
...
- that
...
- is
...
- not
...
- in
...
- the
...
- caArray-prescribed
...
- Copy
...
- Number
...
- MAGE-TAB
...
- Data
...
- Matrix
...
- format,
...
- we
...
- provide
...
- a
...
- conversion
...
- utility.
...
- The
...
- conversion
...
- utility
...
- is
...
- found
...
- inside
...
- the
...
- cn2magetab.jar
...
- file,
...
- and
...
- is
...
- invoked
...
- from
...
- the
...
- command
...
- line.
...
- Please
...
- see
...
- the
...
- README_copy_number_conversion.txt
...
- for
...
- more
...
- details
...
- on
...
- its
...
- operation.
...
What's
...
New
...
in
...
caArray
...
-
...
Archive
...
...
...
...
...
...
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