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Date

Attendees



Agenda

  • General Updates
    • Current data release in pipeline
      • Updates to CPTAC3 UCEC proteome and phosphoproteome - adding plex 17, quantitative data, supplementary data 
      • Updates to CBTTC Pediatric Brain cancer study - supplementary data
      • CPTAC3 LSCC - Proteome, Phosphoproteome, Acetylome, add Ubiquitylome 
    • Other datasets
      • CPTAC2 BRCA Proteome (update), Phosphoproteome (update), Acetylome (new study)
      • CPTAC2 OV Glycoproteome (new study)
      • CPTAC3 GBM Acetylome (new study)
      • ICPC - Korea PDA cancer - may need study accessions for publication by submitting genomic data set to DBGaP
      • CPTAC3 PDA
    • PDC portal and workspace feature improvements and bug fixes 
      • Adding Principal investigator details as Contacts to the study summary page
      • Workspace improvement - Ability to add annotations in free format and use them as metadata to create experimental design and other study parameters
    • CPTAC Data Portal migration, next steps  
    • Prioritization of building analytics dashboard to track user visits and data downloads 
    • Scientific committee meeting 
      • Now planned for September 28, 5-6 PM EST. 
    • External interactions
      • API related questions from ISB-CGC
      • Discuss PDC Data submission process with CRDC 

Discussion items

TimeItemWhoNotes

Release
  • There will be a Production release on 9/10 during non-business hours which includes updates to 5 existing and 4 new studies (CPTAC3 LSCC - Proteome, Phosphoproteome, Acetylome, Ubiquitylome )
  • New Features to improve user experience
  • Anna Roberts at OCCPR has been informed and links provided for this release

Other Data sets in Pipeline
  • A complete reload will be done for BRCA since several updates have been done by Broad which impacts existing data
  • CPTAC2 OV Glycoproteome (new study) - waiting for DCC
  • CPTAC3 PDA - Need coordination with DCC
  • Adding Principal investigator details as Contacts to the study summary page  (mock up). Will be sent to Henry's office for validation and review at our next bi-weekly call.

Other Features to be added
File formats are being re-defined by ProteomeXchange Consortium for submission and PDC will apply the same to retain consistency.

CPTAC Data portal MigrationSudhaGet the green signal from Henry and team

Google AnalyticsSudhaRequest for go ahead from Henry and team

Scientific Committee meetingRajeshShare the agenda and goals with Henry and Erika

Action items

  •  

    Sudha - CPTAC Data Portal Migration: Some of the things we need are - if all or some of the data needs to be migrated, the order of ingestion of these datasets, plan for Phase-I legacy data, the studies that might not fit in the current data model, etc. This will allow us to come up with a plan for the road map discussion and balance it with new study releases.

  •  Sudha -  Google Analytics: Determine Priority since majority of the downloads are still happening via CPTAC portal.