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changes.mady.by.user Unknown User (bearceba)

Saved on Feb 18, 2021

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changes.mady.by.user Unknown User (bearceba)

Saved on Mar 01, 2021

Activities completed this month
Added Okta as supported feature in MedICI GitHub and website. Received scoring program for SPIE-AAPM Breast Cancer Challenge. Added to challenge site. The SPIE-AAPM Breast Cancer challenge has started (25 participants). Challenge link: http://spie-aapm-nci-dair.westus2.cloudapp.azure.com/. Will need to double check that they have the scoring program ready (I know it is not right now..). Updated SPIE-AAPM site to include new validation phase data. Add support link and message regarding using the api for image and metadata downloads. Investigated Kheops and am finishing the report.

Activities completed this month

Added Okta as supported feature in MedICI GitHub and website.
Received scoring program for SPIE-AAPM Breast Cancer Challenge. Added to challenge site.
The SPIE-AAPM Breast Cancer challenge has started (25 participants). Challenge link: http://spie-aapm-nci-dair.westus2.cloudapp.azure.com/. Will need to double check that they have the scoring program ready (I know it is not right now..).
Updated SPIE-AAPM site to include new validation phase data.
Add support link and message regarding using the api for image and metadata downloads.
Investigated Kheops and am finishing the report.

Planned for next month
Add Okta as supported feature in MedICI GitHub and website. Wrap Wraped up the SPIE-AAPM Breast Challenge and collect final scores for the challenge organizers. Continue Continued ascertaining the validity of v2 codalab (codabench). I honestly haven't had too much time because of the covid challenge platform. Finished Finish creating the MedNIST sample challenge on COVID-Kubernetes deployment and address addressed some bugs listed below: FIXED: In results table the "FILENAME" is always "trackingid", needs to be the image that was submitted. FIXED: Image Uploads are slow and we need to address that. The solution we chose was to upload instructions for building an image and have it built on our server and then push it. Before we were sending 6+GB over HTTP. That was slow. Now we only send a couple MB and then we can build the image and send at much faster speeds. NOT FIXED: Sometimes deleting an image from the repo changes the image upload html and I have to reset it. This shouldn't happen. This is quite elusive and I haven't spent a ton of time on it. It's really east to reset so it should never fully break the platform, but I do need to reset it every once in a while. I imagine this will become annoying over time and especially weekends. Setup DL-sparse-view CT Grand Challenge (I'm a little behind on this)

Planned for next month

Add Okta as supported feature in MedICI GitHub and website.
Wrap Wraped up the SPIE-AAPM Breast Challenge and collect final scores for the challenge organizers.
Continue Continued ascertaining the validity of v2 codalab (codabench). I honestly haven't had too much time because of the covid challenge platform.
Finished Finish creating the MedNIST sample challenge on COVID-Kubernetes deployment and address addressed some bugs listed below:
1. FIXED: In results table the "FILENAME" is always "trackingid", needs to be the image that was submitted.
2. FIXED: Image Uploads are slow and we need to address that. The solution we chose was to upload instructions for building an image and have it built on our server and then push it. Before we were sending 6+GB over HTTP. That was slow. Now we only send a couple MB and then we can build the image and send at much faster speeds.
3. NOT FIXED: Sometimes deleting an image from the repo changes the image upload html and I have to reset it. This shouldn't happen. This is quite elusive and I haven't spent a ton of time on it. It's really east to reset so it should never fully break the platform, but I do need to reset it every once in a while. I imagine this will become annoying over time and especially weekends.
Setup DL-sparse-view CT Grand Challenge (I'm a little behind on this)

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