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Activities completed this month
  1. Added Okta as supported feature in MedICI GitHub and website (About Page: https://www.medici-challenges.org/about).
  2. Wrapped up the SPIE-AAPM Breast Challenge and collect final scores for the challenge organizers. 
  3. Add support link and message regarding using the api for image and metadata downloads.
  • Investigated Kheops and am finishing the report.
    • Planned for next monthContinued ascertaining the validity of v2 codalab (codabench). I honestly haven't had too much time because of the covid challenge platform. I did get it to launch but there are some issus. I plan to get it all ready and deployed with the MICCAI challenge from last year. Once I have that we can scan it on the NCI platform and run challenges there.
    1. Launched the DL Sparse view challenge: http://aapmchallenges.cloudapp.net/competitions/38
    2. Got a version of codabench to launch locally on my laptop. Codabench is the new and improved codalab. I still need to launch the miccai challenge on it to test it out. 
    3. Investigated Kheops and am finishing the report.
    4. Finished creating the MedNIST sample challenge on COVID-Kubernetes deployment and addressed some bugs listed below:
      1. FIXED: In results table the "FILENAME" is always "trackingid", needs to be the image that was submitted.
        Image Modified
      2. FIXED: Image Uploads are slow and we need to address that. The solution we chose was to upload instructions for building an image and have it built on our server and then push it. Before we were sending 6+GB over HTTP. That was slow. Now we only send a couple MB and then we can build the image and send at much faster speeds. 
        Image Modified
      3. NOT FIXED: Sometimes deleting an image from the repo changes the image upload html and I have to reset it. This shouldn't happen. This is quite elusive and I haven't spent a ton of time on it. It's really east to reset so it should never fully break the platform, but I do need to reset it every once in a while. I imagine this will become annoying over time and especially weekends.
    5. Setup DL-sparse-view CT Grand Challenge
    (I'm a little behind on this). 
    1. :
      UPDATE: I have a site setup: http://aapmchallenges.cloudapp.net/competitions/38
      Image Modified
      TO DO: Upload scoring program and figure out data hosting situation. 
    Planned for next month


    1. Continued ascertaining the validity of v2 codalab (codabench). I honestly haven't had too much time because of the covid challenge platform. I did get it to launch but there are some issus. I plan to get it all ready and deployed with the MICCAI challenge from last year. Once I have that we can scan it on the NCI platform and run challenges there.
    2. Image Added


    Comments

    Things that went well:

    Comments

    Things that went well:

    NO UPDATE: I have the start of the codabench deployed and it almost works. There is a problem with the static files not being able to be found so there is no style on the web app when browsed to.

    Things that could be improved:


    ...