Page History

Recent Releases:

Data:

• New: CPTAC Public data migration

• Normal Colon Epithelium Samples – CPTAC Study id: S019
• Publication related supplementary data added - CPTAC study ids: S022, S026, S029, S050, S056, S057, S060

• Updates:
  • Workflow metadata updated for several Compref studies

• Features:
  • A new file manifest download option in TSV format
  • A maintenance page that looks like PDC Data Browser for downtime during new version deployment
  • A new data use guidelines page
  • Enforcing embargo DUA with APIs

• Ongoing and Planned Activities:
  • A versioning feature to handle data changes after release
  • A dedicated publication page that lists all publications - displays the abstract, all related PDC studies, and publication related supplementary material
  • A dedicated heatmap page to simply navigation to CDAP quantitation data
  • PDC-Firecloud/Terra interoperability through PFB url handoff
  • Seven Bridges CGC Proteomics virtual Workshop 0 04/21/2021 https://www.cancergenomicscloud.org/events
  • CPTAC Data Migration
    • Legacy studies
    • Phase II Compref studies (CPTAC study ids: S017, S018, S021)
  • Persona definition for User Group

Rajesh

Michael Holck 

Sudha

Erika

A demo of the Study versioning was done and Erika had a question if a search by Study Id can bring up the Study details.

Rajesh indicated the feature for this Search has been implemented.

Michael H spoke about the PFB file manifest that follows the GA4GH standards implementation and how we are working on the DRS url and Firecloud adding that to their whitelist. This will allow users to easily transfer files across AWS to Google Cloud without having to download the large files locally. This is a good step towards integrating with GCS.

The team had a good exercise working on defining Personas with the Comms team. This will lead to establishing user group followed by conducting interviews to collect feedback for the portal.

Mike MacCoss was suggesting working with Amanda Pavlovich since she has the Cancer clinician in addition to CPTAC and MS expertise. We can keep improving the data access to Data Scientists and Bioinformaticists. Learning more from the audience will be good.

Erika shared with the group about the ProteomeXchange meeting she attended and learned about how other groups work.