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TaskDue DateDeliverableStatus

Support of at least new two challenges

  • MICCAI 2020
  • SPIE-AAPM-NCI DAIR
  • DL Sparse View CT Challenge
8/30/2021
  • DL Sparse View CT Challenge is underway
  • https://www.medici-challenges.org/
    • SPIE-AAPM-NCI DAIR
    • DL Sparse View CT Challenge
    • SPIE-AAPM-NCI-DAIR Phase 2
    • Breast MRI prediction of NAC Response

Reopen three previously executed challenges

  • process the results of new submissions
  • update the leaderboards
  • inform participants of their results
8/30/2021


https://www.medici-challenges.org/

  • ISBI 2018
  • AAPM RT-MAC Challenge
  • MICCAI 2020
  • Keyvan is going to contact M. M. (Duke) re second breast tomosynthesis challenge
  • BreastPathQ challenge (paper was just published)
  • Contact challenge organizers and/or professional organizations for permission to re-open the challenges
  • need to make decisions on how to best handle the challenges
  • find out if the datasets are still available and can be continued to be shared
  • Wagner, Ulrike (NIH/NCI) [C] schedule meeting to discuss this

Ben to investigate how to reopen the challenges e.g. by adding a new phase

Discuss with Jayashree which challenges to reopen, reach out to MICCAI organization group to ask if they would be ok to reopen.

Verify that users can create accounts

Are the images still available?

Start with one challenge.

Maintain and update the website8/30/2021


  • Capturing and providing metrics on the use of the MedICI website
8/30/2021
Investigate Google analytics plug-in - DONE (2021/04/01)
  • Capturing and providing metrics on the challenges
8/30/2021


Investigate the use of MedICI for federated learning challenges

 

Report

Investigate the integration of MedICI with Kheops

 

Report

Presentation: NICC

The recordings are towards the bottom of the page.

URL: https://kheops.online/

Draft: https://docs.google.com/document/d/1c20ny4UNWw4BTXhdFPmc3o0YG00toOndbklXhc40Rqc/edit

The report was finalized on  


Support the deployment of MedICI in NCI cloud environments8/30/2021

App scan found vulnerabilities, Ben fixed them, app needs to be tested with test cases that are provided by Codalab, Ben needs to familiarize himself with the test suite. Codalab needs to be app scanned again.

Codalab can connect to various storage places: Azure, AWS, GCP

2021/04/15 - NCI is hardening security which makes deployment much harder. NCI VMs are not allowed to talk to cloud environments. Kevin is investigating workarounds. The goal is to run an app scan. 

Keyvan suggested trying a Codalab deployment on Google cloud outside of the NCI network. Keyvan will investigate.



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