NIH | National Cancer Institute | NCI Wiki  

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

ImagingKC:Imaging Quick Links
Section
ContentsofthisPage
Column
width40%
Anchor
ContentsofthisPage
Panel
titleContents of this Page
Table of Contents
minLevel2
Include Page
ImagingKC:Imaging Quick Links
Column
Panel
titleAt-a-Glance Details
  • Current Release of NBIA: GitHub
    Multiexcerpt include
    MultiExcerptNameExitDisclaimer
    nopaneltrue
    PageWithExcerptwikicontent:Exit Disclaimer to Include
  • Current Release of NBIA Data Retriever: 4.4, October 2022; Linux versions, 4.4.1, August 2023Version Number and Release Date: 5.0.2 April 25, 2011
  • Primary audience: Investigators and Researchers
  • Grid Enabled? Yes
  • Compatibility Level: Not yet determined
  • Installation Level: Intermediate - technical assistance may be required, download may require supporting infrastructure or software
  • System Requirements: Provides Webweb-based access to deidentified de-identified DICOM images, markups, and annotations using role-based security. The NBIA download package is a ZIP package that includes the NBIA application, supporting libraries, the RSNA Clinical Trial Processor (CTP) submission client/server (with NBIA modifications), and associated documentation. 

Tool Overview

Wiki Markup
{multi-excerpt:name=NBIA}The National Biomedical Imaging Archive (NBIA) is a free and open source service and software application that enables users to securely store, search, and download diagnostic medical images, providing a searchable national repository integrating in vivo cancer images with clinical and genomic data. Using role-based security, NBIA provides web-based access to de-identified DICOM images, image markup, annotations, and rich meta data. The NBIA download package is a ZIP package that includes the NBIA application, supporting libraries, the RSNA MIRC application (with NBIA modifications), documentation, and a sample NBIA database. A web-based visualization and annotation tool, I-Response, is available to users of the NCI NBIA instance.{multi-excerpt}

...

Multiexcerpt
MultiExcerptNameNBIA

The National Biomedical Imaging Archive is a free and open-source service and a software application that enables users to securely store, search, and download diagnostic medical images, providing a searchable repository integrating in vivo cancer images with clinical data. Using role-based security, NBIA provides web-based access to de-identify DICOM images.

Along with the Clinical Trial Processor software from the Radiological Society of North America, NBIA supports customized de-identification of images. NBIA is able to integrate with other imaging applications to cull various data types, such as image annotations, clinical data, genomic data, and other research files, such as RT objects.NBIA can also federate with other instances of NBIA to support the response of multiple NBIA servers to a single query.

NCI's hosted instance of NBIA is freely available and provides researchers and clinicians with a robust DICOM archive that can securely share and access images to enhance scientific research and support clinical decision making. Anyone can deploy a local node of NBIA and, using caGrid infrastructure, securely share data across the grid.

The ultimate goals of the project include:

...

applications through a set of APIs. For more information, see the NBIA REST API Guides

Multiexcerpt include
MultiExcerptNameExitDisclaimer
nopaneltrue
PageWithExcerptwikicontent:Exit Disclaimer to Include
.

Installation and Downloads

...

Refer to

...

GitHub

Multiexcerpt include
MultiExcerptNameExitDisclaimer
nopaneltrue
PageWithExcerptwikicontent:Exit Disclaimer to Include
 for more information on building and installing NBIA.

No community support is available from the NCI for NBIA.

NBIA Data Retriever 4.4 (Current Release)

The NBIA Data Retriever is an application that allows you to download the images you have added data to the cart. More information on how to use the NBIA Data Retriever is in the TCIA Radiology Portal User's Guide. The NCI supports the current release of the NBIA Data Retriever and two previous releases. Earlier releases have been deprecated.

Multiexcerpt
MultiExcerptNameNBIADataRetrieverInstallFiles
PlatformFile
Windows
Mac
Linux (tested on CentOS)

NBIADataRetriever-4.4.1.x86_64.rpm

To run this file, type the following at the command prompt:
sudo yum -v -y remove NBIADataRetriever-4.4.x86_64.rpm;sudo yum -y install NBIADataRetriever-4.4.1.x86_64.rpm

Linux (tested on Ubuntu)

nbia-data-retriever-4.4.1.deb

To run this file, type the following at the command prompt:

sudo -S dpkg -r nbia-data-retriever-4.4.deb;sudo -S dpkg -i nbia-data-retriever-4.4.1.deb

Documentation

Open-Source Development

NBIA is an open-source project with its code repository on GitHub

Multiexcerpt include
MultiExcerptNameExitDisclaimer
nopaneltrue

Forum and Support

Support

Defects and Feature Requests

Open Source Development

Contact Application Support for information about open source development and NBIA.

Presentations, Demos and Other Materials

...

ImageJ

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include

...

FusionViewer

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include

...

OsirixViewer

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include

...

ClearCanvas

Multiexcerpt include
nopaneltrue
MultiExcerptNameExitDisclaimer
PageWithExcerptwikicontent:Exit Disclaimer to Include

...

PageWithExcerptwikicontent:Exit Disclaimer to Include
.

Presentations, Demos and Other Materials

Documentation and Training

Integration with Other Tools

...