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Committee MemberPresentAbsent
Kuffel, Gina (NIH/NCI) [C]
X

Unknown User (leblancak)

X

Otridge, John (NIH/NCI) [C]



Kim, Erika (NIH/NCI) [E]
X

Sommers, Connie (NIH/NCI) [E]



Debbie Knapp
X
Toby HechtX

Unknown User (parchmentr)



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ItemWhoTalking Points
DGAB Updates

Kuffel, Gina (NIH/NCI) [C]

  • 33 TB of data are now available in ICDC (five-fold increase since January)
  • TCL01: A multi-omics analysis of canine mammary cancer cell lines
    • File transfer is complete
    • Metadata loaded onto Dev tier
    • Indexing completed by DCF team
    • Pending release record is visible on production
    • Study is under formal testing by our team 
  • PRECINCT has used templates available from the ICDC Data Model Explorer (DME) for the first ever load of a study via submitter-generated loading files
    • Initial version of data is available in Dev tier
    • Data includes program, study, and and complete case records.
    • No sample records or files derived from samples yet.
  • Will has volunteered his time to create a scientific use case from ICDC data (respond to RFI)
  • DGAB approved new data submission request from Dawn Duval’s group: “Immune Pathways and TP53 missense mutations are associated with longer survival in canine osteosarcoma”. (26 tumor normal pairs)
  • Kick-off call for the PanCan study
BPSC Updates

Kuffel, Gina (NIH/NCI) [C] 

August Steering Committee Updates

Unknown User (parchmentr)

  • Minutes to be posted
  • Next meeting is September 21st
ICDC Site Updates

Kuffel, Gina (NIH/NCI) [C]

  • Next software release targets October 13th
    • Multi-file select for JBrowse
    • Elasticsearch
    • Data Model Navigator
      • ReadMe file and viewing modal 
      • TSV & JSON downloads of controlled vocabularies for properties with enumerated values
      • Node-specific tsv downloads
      • Faceted search augmented to include props featured on the UI
      • File transfer manifest to enable seamless file hand-offs
ICDC Next Phase Planning

Unknown User (hechtt)

Minutes (Not Verbatim)

TH- Possible COI with people working on the RFI and then responding to the RFI. Dr. Doroshow signed off on RFI. Unless there are issues noted the RFI should be published in ~ 2 weeks. Many ideas came from initial focus groups. 

JO- What type of plans can be put in place to advertise the RFI? Can we leverage NCI social media?

TH- We can send to anyone we want, including Cancer Center Directors, they have collaborations with vet clinic schools, some of the foundations.

AL- Circulate to PRECINCT as well.

TH- Deadline for response is Dec. 1st.

AL- Giving presentation to the children's oncology group. Touched base with CIN and PRECINCT. The talk is osteo-focused.


Previous ICDC Use Cases from Steering Committee

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