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ItemWhoTalking Points
DGAB Updates

Kuffel, Gina (NIH/NCI) [C]

  • 33 TB of data are now available in ICDC (five-fold increase since January)
  • TCL01: A multi-omics analysis of canine mammary cancer
    • File transfer is complete
    • Metadata loaded onto Dev tier
    • Manifest sent to Indexing completed by DCF team for indexing
    • Pending release record to be is visible in on production soon
    1st PRECINCT study has been approved by the DGAB & SAC
    • Study is under formal testing by our team 
  • PRECINCT has used templates available from the ICDC Data Model Explorer (DME) for the first ever load of a study via submitter-generated loading files
    • Initial version of data is available in Dev tier
    • Data includes program, study, and and complete case records.
    • No sample records or files derived from samples yet.
  • Will has volunteered his time to create a scientific use case from ICDC data
  • DGAB approved new data submission request from Dawn Duval’s group: “Immune Pathways and TP53 missense mutations are associated with longer survival in canine osteosarcoma”. (26 tumor normal pairs)
  • Kick-off call for the PanCan study
BPSC Updates

Kuffel, Gina (NIH/NCI) [C] 

August Steering Committee Updates

Unknown User (parchmentr)

  • Minutes to be posted
  • Next meeting is August 24th
ICDC Site Updates

Kuffel, Gina (NIH/NCI) [C]

  • Next software release targets October 13th
    • Multi-file select for JBrowse
    • Elasticsearch
    • Data Availability Landscape (DAL)Model Navigator
      • ReadMe file and viewing modal 
      • TSV & JSON downloads of controlled vocabularies for properties with enumerated values
      • Node-specific tsv downloads
      • Faceted search augmented to include props featured on the UI
      Gene annotations for JBrowse
ICDC Next Phase Planning

Unknown User (hechtt)

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