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{scrollbar:icons=false} h1. {page-info:title} {multi-excerpt:name=Bibliography}Below is a preliminary bibliography of scientific literature on EVS and its use. {toc:minLevel=2} h2. Scientific Journal Articles h3. EVS General # De Coronado S, Wright LW, Fragoso G, Haber MW, Hahn-Dantona EA, Hartel FW, Quan SL, Safran T, Thomas N, Whiteman L. The NCI Thesaurus Quality Assurance Life Cycle. ??Journal of Biomedical Informatics?? 2009 June;42(3):530-539. \[[Available online\|http://www.sciencedirect.com/science/article/B6WHD-4VFC80H-4/2/42a20ff355ab427f4d674d96e913c63b]\] # Noy NF, de Coronado S, Solbrig H, Fragoso G, Hartel FW, Musen MA. Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages. ??Appl Ontol.?? 2008 Jan 1;3(3):173-190. \[[Free PMC Article\|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2753293/?tool=pubmed]\] # Haber MW, Kisler BW, Lenzen M, Wright LW. Controlled Terminology for Clinical Research: A Collaboration between CDISC and NCI Enterprise Vocabulary Services. ??Drug Information Journal?? 2007;41(3):405-412. \[[Available online\|http://www.nxtbook.com/nxtbooks/dia/druginformationjournal0507/index.php?startpage=142]\] # Sioutos N, De Coronado S, Haber MW, Hartel FW, Shaiu WL, Wright LW. NCI Thesaurus: A Semantic Model Integrating Cancer-Related Clinical and Molecular Information. ??Journal of Biomedical Informatics?? 2007 Feb;40(1):30-43. Epub 2006 Mar 15. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/16697710]\] # De Coronado S, Tuttle MS, Solbrig HR. Using the UMLS Semantic Network to Validate NCI Thesaurus Structure and Analyze its Alignment with the OBO Relations Ontology. ??AMIA Annu Symp Proc.?? 2007:165-70. \[[Available online\|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655888/pdf/amia-0165-s2007.pdf]\] # Hartel FW, De Coronado S, Dionne R, Fragoso G, Golbeck J. Modeling a description logic vocabulary for cancer research. ??Journal of Biomedical Informatics??, 2005; 38(2):114-129. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/15797001]\] # Fragoso G, De Coronado S, Haber MW, Hartel FW, Wright LW. Overview and Utilization of the NCI Thesaurus. ??Comparative and Functional Genomics?? (Dec. 2004) 5(8):648-654. \[[Free PMC Article\|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447470/?tool=pubmed]\] # De Coronado S, Haber MW, Sioutos N, Tuttle MS, Wright LW. NCI Thesaurus: Using Science-Based Terminology to Integrate Cancer Research Results. ??Proceedings of the 11th World Congress on Medical Informatics (Medinfo 2004)?? Amsterdam: IOS Press 2004, pp. 33-37. Also cited as: ??Stud Health Technol Inform.?? 2004;107(Pt 1):33-7. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/15360769]\] # Hartel F, Fragoso G, Ong K, Dionne R. Enhancing Quality of Retrieval Through Concept Edit History. ??AMIA Annu Symp Proc.?? 2003:279-83. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/14728178]\] # Goldbeck J, Fragoso G, Hartel F, Hendler J, Oberthaler J, Parsia B. The National Cancer Institute's Thesaurus and Ontology. ??Journal of Web Semantics?? (2003) 1:75-80. h3. Biomedical Applications # Pathak J, Wang J, Kashyap S, Basford M, Li R, Masys DR, Chute CG. Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. ??J Am Med Inform Assoc.?? 2011 Jul-Aug;18(4):376-86. Epub 2011 May 19. PubMed PMID: 21597104; PubMed Central PMCID: PMC3128396. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/21597104]\] # Sherman S, Shats O, Ketcham MA, Anderson MA, Whitcomb DC, Lynch HT, Ghiorzo P, Rubinstein WS, Sasson AR, Grizzle WE, Haynatzki G, Feng J, Sherman A, Kinarsky L, Brand RE. PCCR: Pancreatic Cancer Collaborative Registry. ??Cancer Inform.?? 2011 Mar 23;10:83-91. PubMed PMID: 21552494; PubMed Central PMCID: PMC3085425. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/21552494]\] # Sherman S, Shats O, Fleissner E, Bascom G, Yiee K, Copur M, Crow K, Rooney J, Mateen Z, Ketcham MA, Feng J, Sherman A, Gleason M, Kinarsky L, Silva-Lopez E, Edney J, Reed E, Berger A, Cowan K. Multicenter breast cancer collaborative registry. ??Cancer Inform.?? 2011;10:217-26. Epub 2011 Aug 31. PubMed PMID: 21918596; PubMed Central PMCID: PMC3169352. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/21918596]\] # Bertaud Gounot V, Donfack V, Lasbleiz J, Bourde A, Duvauferrier R. Creating an ontology driven rules base for an expert system for medical diagnosis. ??Stud Health Technol Inform.?? 2011;169:714-8. PubMed PMID: 21893840. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/21893840]\] # Cuggia M, Bourde A, Turlin B, Vincendeau S, Bertaud V, Bohec C, Duvauferrier R. Automatic Definition of the Oncologic EHR Data Elements from NCIT in OWL. ??Stud Health Technol Inform.?? 2011;169:517-21. PubMed PMID: 21893803. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/21893803]\] # Kang HP, Borromeo CD, Berman JJ, Becich MJ. The tissue microarray OWL schema: An open-source tool for sharing tissue microarray data. ??J Pathol Inform.?? 2010 Jul 13;1. pii: 9. PubMed PMID: 20805954; PubMed Central PMCID: PMC2929536. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/20805954]\] # Reed TL, Kaufman-Rivi D. FDA adverse Event Problem Codes: standardizing the classification of device and patient problems associated with medical device use. ??Biomed Instrum Technol.?? 2010 May-Jun;44(3):248-56. PubMed PMID: 20715359. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/20715359]\] # Yip V, Mete M, Topaloglu U, Kockara S. Concept Discovery for Pathology Reports using an N-gram Model. ??AMIA Summits Transl Sci Proc.?? 2010 Mar 1;2010:43-7. PubMed PMID: 21347147; PubMed Central PMCID: PMC3041542. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/21347147]\] # Shah NH, Jonquet C, Chiang AP, Butte AJ, Chen R, Musen MA. Ontology-driven indexing of public datasets for translational bioinformatics. ??BMC Bioinformatics.?? 2009 Feb 5;10 Suppl 2:S1. PubMed PMID: 19208184; PubMed Central PMCID: PMC2646250. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/19208184]\] # Liu H, Li X, Yoon V, Clarke R. Annotating breast cancer microarray samples using ontologies. ??AMIA Annu Symp Proc.?? 2008 Nov 6:414-8. PubMed PMID: 18999108; PubMed Central PMCID: PMC2655965. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/18999108]\] # Marinelli RJ, Montgomery K, Liu CL, Shah NH, Prapong W, Nitzberg M, Zachariah ZK, Sherlock GJ, Natkunam Y, West RB, van de Rijn M, Brown PO, Ball CA. The Stanford Tissue Microarray Database. ??Nucleic Acids Res.?? 2008 Jan;36(Database issue):D871-7. Epub 2007 Nov 7. PubMed PMID: 17989087; PubMed Central PMCID: PMC2238948. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/17989087]\] # Marquet G, Dameron O, Saikali S, Mosser J, Burgun A. Grading glioma tumors using OWL-DL and NCI Thesaurus. ??AMIA Annu Symp Proc.?? 2007 Oct 11:508-12. PubMed PMID: 18693888; PubMed Central PMCID: PMC2655830. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/18693888]\] # Burgun A, Bodenreider O. Issues in integrating epidemiology and research information in oncology: experience with ICD-O3 and the NCI Thesaurus. ??AMIA Annu Symp Proc.?? 2007 Oct 11:85-9. PubMed PMID: 18693803. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/18693803]\] # Shah NH, Rubin DL, Espinosa I, Montgomery K, Musen MA. Annotation and query of tissue microarray data using the NCI Thesaurus. ??BMC Bioinformatics.?? 2007 Aug 8;8:296. PubMed PMID: 17686183; PubMed Central PMCID: PMC1988837. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/17686183]\] # Tobias J, Chilukuri R, Komatsoulis GA, Mohanty S, Sioutos N, Warzel DB, Wright LW, Crowley RS. The CAP Cancer Protocols -- A Case Study of caCORE Based Data Standards Implementation to Integrate with the Cancer Biomedical Informatics Grid. ??BMC Medical Informatics Decision Making??, 20; 6:25, 2006. \[[Free PMC Article\|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1524939/?tool=pubmed]\] # Deitzer JR, Payne PR, Starren JB. Coverage of clinical trials tasks in existing ontologies. ??AMIA Annu Symp Proc.?? 2006:903. PubMed PMID: 17238522; PubMed Central PMCID: PMC1839431. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/17238522]\] # Bailey LO, Kennedy CH, Fritts MJ, Hartel FW. Development of a model for the representation of nanotechnology-specific terminology. ??AMIA Annu Symp Proc.?? 2006:849. PubMed PMID: 17238469; PubMed Central PMCID: PMC1839578. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/17238469]\] # Shah NH, Rubin DL, Supekar KS, Musen MA. Ontology-based annotation and query of tissue microarray data. ??AMIA Annu Symp Proc.?? 2006:709-13. PubMed PMID: 17238433; PubMed Central PMCID: PMC1839511. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/17238433]\] h3.# caCOREZhang and caBIG # Cimino JJ, Hayamizu TF, Bodenreider O, Davis B, Stafford GA, Ringwald M. The caBIG terminology review process. ??J Biomed Inform.?? 2009 Jun;42(3):571-80. Epub 2008 Dec 25. PubMed PMID: 19154797S, Bodenreider O. Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference. ??AMIA Annu Symp Proc.?? 2005:864-8. PubMed PMID: 16779163; PubMed Central PMCID: PMC2729758PMC1560629. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1915479716779163]\] # Shironoshita EP, Jean-Mary YR, Bradley RM, Kabuka MR. semCDI: a query formulation for semantic data integration in caBIG. ??J Am Med Inform Assoc.?? 2008 Jul-Aug;15(4):559-68. Epub 2008 Apr 24 Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S. Of mice and men: aligning mouse and human anatomies. ??AMIA Annu Symp Proc.?? 2005:61-5. PubMed PMID: 1843689716779002; PubMed Central PMCID: PMC2442262PMC1560846. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1843689716779002]\] # Komatsoulis GA, Warzel DB, Hartel FW, Shanbhag K, Chilukuri R, Fragoso G, Coronado S, Reeves DM, Hadfield JB, Ludet C, Covitz PA. caCORE version 3: Implementation of a model driven, service-oriented architecture for semantic interoperability. h3. caCORE and caBIG # Cimino JJ, Hayamizu TF, Bodenreider O, Davis B, Stafford GA, Ringwald M. The caBIG terminology review process. ??J Biomed Inform.?? 20082009 FebJun;4142(13):106571-2380. Epub 20072008 AprDec 225. PubMed PMID: 1751225919154797; PubMed Central PMCID: PMC2254758PMC2729758. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1751225919154797]\] # GaoShironoshita QEP, ZhangJean-Mary YLYR, XieBradley ZYRM, Zhang QP, Hu ZZKabuka MR. caCOREsemCDI: corea architecturequery offormulation bioinformationfor onsemantic cancerdata researchintegration in AmericacaBIG. ??BeijingJ DaAm XueMed XueInform BaoAssoc.?? 2006 Apr 18;38(2):218-21. Chinese2008 Jul-Aug;15(4):559-68. Epub 2008 Apr 24. PubMed PMID: 16617371 18436897; PubMed Central PMCID: PMC2442262. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1661737118436897]\] # Covitz PAKomatsoulis GA, Warzel DB, Hartel FW, Shanbhag FK, SchaeferChilukuri CR, DeFragoso G, Coronado S, FragosoReeves GDM, SahniHadfield HJB, GustafsonLudet SC, BuetowCovitz KHPA. caCORE version 3: Implementation of a common infrastructure model driven, service-oriented architecture for cancersemantic informaticsinteroperability. ??BioinformaticsJ Biomed Inform.?? 20032008 Dec 12Feb;1941(181):2404-12106-23. Epub 2007 Apr 2. PubMed PMID: 14668224 17512259; PubMed Central PMCID: PMC2254758. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1466822417512259]\] h3. LexEVS # PathakGao JQ, PetersZhang LYL, ChuteXie CGZY, BodenreiderZhang O.QP, ComparingHu andZZ. evaluatingcaCORE: terminologycore servicesarchitecture applicationof programmingbioinformation interfaces:on RxNav,cancer UMLSKSresearch andin LexBIGAmerica. ??JBeijing AmDa MedXue InformXue AssocBao.?? 2010 Nov-Dec;17(6):714-92006 Apr 18;38(2):218-21. Chinese. PubMed PMID: 20962136; PubMed Central PMCID: PMC300074916617371. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/2096213616617371]\] # PathakCovitz JPA, SolbrigHartel HRF, BuntrockSchaefer JDC, JohnsonDe Coronado TMS, ChuteFragoso CG. LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime. ??J Am Med Inform Assoc.?? 2009 May-Jun;16(3):305-15. Epub 2009 Mar 4. PubMed PMID: 19261933; PubMed Central PMCID: PMC2732233G, Sahni H, Gustafson S, Buetow KH. caCORE: a common infrastructure for cancer informatics. ??Bioinformatics.?? 2003 Dec 12;19(18):2404-12. PubMed PMID: 14668224. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1926193314668224]\] h3. NLPLexEVS # Crowley RSPathak J, Peters L, TseytlinChute ECG, JukicBodenreider DO. ReportTutorComparing -and anevaluating intelligentterminology tutoringservices systemapplication thatprogramming usesinterfaces: aRxNav, naturalUMLSKS languageand interfaceLexBIG. ??AMIAJ Am AnnuMed SympInform ProcAssoc.?? 2005:171-52010 Nov-Dec;17(6):714-9. PubMed PMID: 1677902420962136; PubMed Central PMCID: PMC1560511PMC3000749. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1677902420962136]\] h3.# OntologyPathak and Semantics # Liu K, Chapman WW, Savova GJ, Solbrig HR, Buntrock JD, Johnson TM, Chute CG,. SioutosLexGrid: N,a Crowleyframework RS.for Effectivenessrepresenting, of Lexico-syntactic Pattern Matching for Ontology Enrichment with Clinical Documentsstoring, and querying biomedical terminologies from simple to sublime. ??MethodsJ InfAm Med Inform Assoc.?? 2010: 8;49(6). 2009 May-Jun;16(3):305-15. Epub 2009 Mar 4. PubMed PMID: 19261933; PubMed Central PMCID: PMC2732233. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/2105772019261933]\] h3. NLP # SchulzCrowley SRS, SchoberTseytlin DE, TudoseJukic I,D. StenzhornReportTutor H.- Thean Pitfallsintelligent oftutoring Thesaurussystem Ontologizationthat -uses thea Casenatural of the NCI Thesauruslanguage interface. ??AMIA Annu Symp Proc.?? 2010 Nov 13;2010:727-312005:171-5. PubMed PMID: 2134707416779024; PubMed Central PMCID: PMC3041372PMC1560511. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/2134707416779024]\] h3. Ontology and Semantics # NoyLiu NK, TudoracheChapman TWW, deSavova Coronado SG, MusenChute M.CG, DevelopingSioutos biomedicalN, ontologiesCrowley collaborativelyRS. ??AMIAEffectiveness Annuof Symp Proc.?? 2008:520-4Lexico-syntactic Pattern Matching for Ontology Enrichment with Clinical Documents. ??Methods Inf Med.?? 2010: 8;49(6). \[[Available onlinePubMed\|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656043/pdf/amia-0520-s2008.pdfpubmed/21057720]\] # CohenSchulz BS, OrenSchober MD, MinTudose HI, PerlStenzhorn Y,H. Halper M. Automated comparative auditing of NCIT genomic roles using NCBIThe Pitfalls of Thesaurus Ontologization - the Case of the NCI Thesaurus. ??JAMIA Annu BiomedSymp InformProc.?? 20082010 Nov Dec;41(6):904-13. Epub 2008 Mar 2813;2010:727-31. PubMed PMID: 1848655821347074; PubMed Central PMCID: PMC2630966PMC3041372. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1848655821347074]\] # MouginNoy FN, BodenreiderTudorache O.T, Auditingde theCoronado NCI thesaurus with semantic web technologiesS, Musen M. Developing biomedical ontologies collaboratively. ??AMIA Annu Symp Proc.?? 2008 Nov 6:500520-4. PubMed PMID: 18999265; PubMed Central PMCID: PMC2655981. \[[PubMedAvailable online\|http://www.ncbi.nlm.nih.gov/pubmed/18999265/pmc/articles/PMC2656043/pdf/amia-0520-s2008.pdf]\] # DetwilerCohen LTB, SuciuOren DM, BrinkleyMin JF.H, RegularPerl pathsY, in SparQL: querying the NCI ThesaurusHalper M. Automated comparative auditing of NCIT genomic roles using NCBI. ??AMIAJ AnnuBiomed Symp ProcInform.?? 2008 Nov 6:161-5Dec;41(6):904-13. Epub 2008 Mar 28. PubMed PMID: 1899913718486558; PubMed Central PMCID: PMC2656016PMC2630966. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1899913718486558]\] # MinMougin HF, CohenBodenreider B,O. HalperAuditing M,the OrenNCI M,thesaurus Perlwith Y.semantic Detecting role errors in the gene hierarchy of the NCI Thesaurusweb technologies. ??Cancer InformAMIA Annu Symp Proc.?? 2008; Nov 6:293500-3134. PubMed PMID: 1922160618999265; PubMed Central PMCID: PMC2623310PMC2655981. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1922160618999265]\] # Zhang S Detwiler LT, Suciu D, BodenreiderBrinkley OJF. ExperienceRegular paths in Aligning Anatomical OntologiesSparQL: querying the NCI Thesaurus. ??IntAMIA JAnnu Semant Web Inf SystSymp Proc.?? 2007;3(2):1-26 2008 Nov 6:161-5. PubMed PMID: 1897485418999137; PubMed Central PMCID: PMC2575410PMC2656016. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1897485418999137]\] # Min H, Perl Y, Chen YCohen B, Halper M, GellerOren JM, WangPerl Y. AuditingDetecting asrole parterrors ofin the gene terminologyhierarchy of designthe lifeNCI cycleThesaurus. ??JCancer Am Med Inform Assoc.?? 2006 Nov-Dec;13(6):676-90. Epub 2006 Aug 23. 2008;6:293-313. PubMed PMID: 1692904419221606; PubMed Central PMCID: PMC1656963PMC2623310. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1692904419221606]\] # CiminoZhang JJS, ZhuBodenreider XO. TheExperience practicalin impactAligning ofAnatomical ontologies on biomedical informatics. ??Yearb Med InformOntologies. ??Int J Semant Web Inf Syst.?? 2006:124-35. Review2007;3(2):1-26. PubMed PMID: 1705130618974854; PubMed Central PMCID: PMC2575410. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1705130618974854]\] # Ceusters W, Smith B, Goldberg L. A terminological and ontological analysis Min H, Perl Y, Chen Y, Halper M, Geller J, Wang Y. Auditing as part of the terminology NCIdesign life Thesauruscycle. ??MethodsJ InfAm Med Inform Assoc.?? 2005;44(42006 Nov-Dec;13(6):498676-50790. PubMed PMID: 16342916. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/16342916]\] h2. Pending Processing h3. PubMed records # Nadkarni PM, Brandt CA. The Common Data Elements for cancer research: remarks on functions and structure. ??Methods Inf Med.?? 2006;45(6):594-601Epub 2006 Aug 23. PubMed PMID: 1714950016929044; PubMed Central PMCID: PMC2980785PMC1656963. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1714950016929044]\] # ZhangCimino SJJ, BodenreiderZhu OX. AlignmentThe ofpractical multipleimpact ontologies of anatomy:ontologies derivingon indirect mappings from direct mappings to a referencebiomedical informatics. ??AMIAYearb AnnuMed Symp ProcInform.?? 20052006:864124-835. PubMed PMID: 16779163; PubMed Central PMCID: PMC1560629Review. PubMed PMID: 17051306. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1677916317051306]\] # BodenreiderCeusters OW, HayamizuSmith TFB, Ringwald M, De Coronado S, Zhang S. Of miceGoldberg L. A terminological and men:ontological aligninganalysis mouseof andthe humanNCI anatomiesThesaurus. ??AMIAMethods AnnuInf Symp ProcMed.?? 2005;44(4):61498-5507. PubMed PMID: 16779002; PubMed Central PMCID: PMC156084616342916. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1677900216342916]\] h2. Pending Processing h3. PubMed records # CeustersNadkarni WPM, Smith B, Goldberg L. A terminological and ontological analysis of the NCI ThesaurusBrandt CA. The Common Data Elements for cancer research: remarks on functions and structure. ??Methods Inf Med.?? 20052006;4445(46):498594-507601. PubMed PMID: 1634291617149500; PubMed Central PMCID: PMC2980785. \[[PubMed\|http://www.ncbi.nlm.nih.gov/pubmed/1634291617149500]\] {multi-excerpt} {scrollbar:icons=false}

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{scrollbar:icons=false}

h1. {page-info:title}

{multi-excerpt:name=Bibliography}Below is a preliminary bibliography of scientific literature on EVS and its use.

{toc:minLevel=2}

h2. Scientific Journal Articles

h3. EVS General

# De Coronado S, Wright LW, Fragoso G, Haber MW, Hahn-Dantona EA, Hartel FW, Quan SL, Safran T, Thomas N, Whiteman L. The NCI Thesaurus Quality Assurance Life Cycle. ??Journal of Biomedical Informatics?? 2009 June;42(3):530-539. \[[Available online|http://www.sciencedirect.com/science/article/B6WHD-4VFC80H-4/2/42a20ff355ab427f4d674d96e913c63b]\]
# Noy NF, de Coronado S, Solbrig H, Fragoso G, Hartel FW, Musen MA. Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages. ??Appl Ontol.?? 2008 Jan 1;3(3):173-190. \[[Free PMC Article|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2753293/?tool=pubmed]\]
# Haber MW, Kisler BW, Lenzen M, Wright LW. Controlled Terminology for Clinical Research: A Collaboration between CDISC and NCI Enterprise Vocabulary Services. ??Drug Information Journal?? 2007;41(3):405-412. \[[Available online|http://www.nxtbook.com/nxtbooks/dia/druginformationjournal0507/index.php?startpage=142]\]
# Sioutos N, De Coronado S, Haber MW, Hartel FW, Shaiu WL, Wright LW. NCI Thesaurus: A Semantic Model Integrating Cancer-Related Clinical and Molecular Information. ??Journal of Biomedical Informatics?? 2007 Feb;40(1):30-43. Epub 2006 Mar 15. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/16697710]\]
# De Coronado S, Tuttle MS, Solbrig HR. Using the UMLS Semantic Network to Validate NCI Thesaurus Structure and Analyze its Alignment with the OBO Relations Ontology. ??AMIA Annu Symp Proc.?? 2007:165-70. \[[Available online|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655888/pdf/amia-0165-s2007.pdf]\]
# Hartel FW, De Coronado S, Dionne R, Fragoso G, Golbeck J. Modeling a description logic vocabulary for cancer research. ??Journal of Biomedical Informatics??, 2005; 38(2):114-129. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/15797001]\]
# Fragoso G, De Coronado S, Haber MW, Hartel FW, Wright LW. Overview and Utilization of the NCI Thesaurus. ??Comparative and Functional Genomics?? (Dec. 2004) 5(8):648-654. \[[Free PMC Article|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447470/?tool=pubmed]\]
# De Coronado S, Haber MW, Sioutos N, Tuttle MS, Wright LW. NCI Thesaurus: Using Science-Based Terminology to Integrate Cancer Research Results. ??Proceedings of the 11th World Congress on Medical Informatics (Medinfo 2004)?? Amsterdam: IOS Press 2004, pp. 33-37. Also cited as: ??Stud Health Technol Inform.?? 2004;107(Pt 1):33-7. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/15360769]\]
# Hartel F, Fragoso G, Ong K, Dionne R. Enhancing Quality of Retrieval Through Concept Edit History. ??AMIA Annu Symp Proc.?? 2003:279-83. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/14728178]\]
# Goldbeck J, Fragoso G, Hartel F, Hendler J, Oberthaler J, Parsia B. The National Cancer Institute's Thesaurus and Ontology. ??Journal of Web Semantics?? (2003) 1:75-80.

h3. Biomedical Applications

# Pathak J, Wang J, Kashyap S, Basford M, Li R, Masys DR, Chute CG. Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. ??J Am Med Inform Assoc.??  2011 Jul-Aug;18(4):376-86. Epub 2011 May 19. PubMed PMID: 21597104; PubMed Central PMCID: PMC3128396. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/21597104]\]
# Sherman S, Shats O, Ketcham MA, Anderson MA, Whitcomb DC, Lynch HT, Ghiorzo P, Rubinstein WS, Sasson AR, Grizzle WE, Haynatzki G, Feng J, Sherman A, Kinarsky L, Brand RE. PCCR: Pancreatic Cancer Collaborative Registry. ??Cancer Inform.?? 2011 Mar 23;10:83-91. PubMed PMID: 21552494; PubMed Central PMCID: PMC3085425. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/21552494]\]
# Sherman S, Shats O, Fleissner E, Bascom G, Yiee K, Copur M, Crow K, Rooney J, Mateen Z, Ketcham MA, Feng J, Sherman A, Gleason M, Kinarsky L, Silva-Lopez E, Edney J, Reed E, Berger A, Cowan K. Multicenter breast cancer collaborative registry. ??Cancer Inform.?? 2011;10:217-26. Epub 2011 Aug 31. PubMed PMID: 21918596; PubMed Central PMCID: PMC3169352. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/21918596]\]
# Bertaud Gounot V, Donfack V, Lasbleiz J, Bourde A, Duvauferrier R. Creating an ontology driven rules base for an expert system for medical diagnosis. ??Stud Health Technol Inform.?? 2011;169:714-8. PubMed PMID: 21893840. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/21893840]\]
# Cuggia M, Bourde A, Turlin B, Vincendeau S, Bertaud V, Bohec C, Duvauferrier R. Automatic Definition of the Oncologic EHR Data Elements from NCIT in OWL. ??Stud Health Technol Inform.?? 2011;169:517-21. PubMed PMID: 21893803. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/21893803]\]
# Kang HP, Borromeo CD, Berman JJ, Becich MJ. The tissue microarray OWL schema: An open-source tool for sharing tissue microarray data. ??J Pathol Inform.?? 2010 Jul 13;1. pii: 9. PubMed PMID: 20805954; PubMed Central PMCID: PMC2929536. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/20805954]\]
# Reed TL, Kaufman-Rivi D. FDA adverse Event Problem Codes: standardizing the classification of device and patient problems associated with medical device use. ??Biomed Instrum Technol.?? 2010 May-Jun;44(3):248-56. PubMed PMID: 20715359. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/20715359]\]
# Yip V, Mete M, Topaloglu U, Kockara S. Concept Discovery for Pathology Reports using an N-gram Model. ??AMIA Summits Transl Sci Proc.?? 2010 Mar 1;2010:43-7. PubMed PMID: 21347147; PubMed Central PMCID: PMC3041542. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/21347147]\]
# Shah NH, Jonquet C, Chiang AP, Butte AJ, Chen R, Musen MA. Ontology-driven indexing of public datasets for translational bioinformatics. ??BMC Bioinformatics.??  2009 Feb 5;10 Suppl 2:S1. PubMed PMID: 19208184; PubMed Central PMCID: PMC2646250. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/19208184]\]
# Liu H, Li X, Yoon V, Clarke R. Annotating breast cancer microarray samples using ontologies. ??AMIA Annu Symp Proc.?? 2008 Nov 6:414-8. PubMed PMID: 18999108; PubMed Central PMCID: PMC2655965. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/18999108]\]
# Marinelli RJ, Montgomery K, Liu CL, Shah NH, Prapong W, Nitzberg M, Zachariah ZK, Sherlock GJ, Natkunam Y, West RB, van de Rijn M, Brown PO, Ball CA. The Stanford Tissue Microarray Database. ??Nucleic Acids Res.?? 2008 Jan;36(Database issue):D871-7. Epub 2007 Nov 7. PubMed PMID: 17989087; PubMed Central PMCID: PMC2238948. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/17989087]\]
# Marquet G, Dameron O, Saikali S, Mosser J, Burgun A. Grading glioma tumors using OWL-DL and NCI Thesaurus. ??AMIA Annu Symp Proc.?? 2007 Oct 11:508-12. PubMed PMID: 18693888; PubMed Central PMCID: PMC2655830. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/18693888]\]
# Burgun A, Bodenreider O. Issues in integrating epidemiology and research information in oncology: experience with ICD-O3 and the NCI Thesaurus. ??AMIA Annu Symp Proc.?? 2007 Oct 11:85-9. PubMed PMID: 18693803. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/18693803]\]
# Shah NH, Rubin DL, Espinosa I, Montgomery K, Musen MA. Annotation and query of tissue microarray data using the NCI Thesaurus. ??BMC Bioinformatics.?? 2007 Aug 8;8:296. PubMed PMID: 17686183; PubMed Central PMCID: PMC1988837. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/17686183]\]
# Tobias J, Chilukuri R, Komatsoulis GA, Mohanty S, Sioutos N, Warzel DB, Wright LW, Crowley RS. The CAP Cancer Protocols -- A Case Study of caCORE Based Data Standards Implementation to Integrate with the Cancer Biomedical Informatics Grid. ??BMC Medical Informatics Decision Making??, 20; 6:25, 2006. \[[Free PMC Article|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1524939/?tool=pubmed]\]
# Deitzer JR, Payne PR, Starren JB. Coverage of clinical trials tasks in existing ontologies. ??AMIA Annu Symp Proc.?? 2006:903. PubMed PMID: 17238522; PubMed Central PMCID: PMC1839431. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/17238522]\]
# Bailey LO, Kennedy CH, Fritts MJ, Hartel FW. Development of a model for the representation of nanotechnology-specific terminology. ??AMIA Annu Symp Proc.??  2006:849. PubMed PMID: 17238469; PubMed Central PMCID: PMC1839578. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/17238469]\]
# Shah NH, Rubin DL, Supekar KS, Musen MA. Ontology-based annotation and query of tissue microarray data. ??AMIA Annu Symp Proc.?? 2006:709-13. PubMed PMID: 17238433; PubMed Central PMCID: PMC1839511. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/17238433]\]

h3.# caCOREZhang and caBIG

# Cimino JJ, Hayamizu TF, Bodenreider O, Davis B, Stafford GA, Ringwald M. The caBIG terminology review process. ??J Biomed Inform.?? 2009 Jun;42(3):571-80. Epub 2008 Dec 25. PubMed PMID: 19154797S, Bodenreider O. Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference. ??AMIA Annu Symp Proc.??  2005:864-8. PubMed PMID: 16779163; PubMed Central PMCID: PMC2729758PMC1560629. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1915479716779163]\]
# Shironoshita EP, Jean-Mary YR, Bradley RM, Kabuka MR. semCDI: a query formulation for semantic data integration in caBIG. ??J Am Med Inform Assoc.?? 2008 Jul-Aug;15(4):559-68. Epub 2008 Apr 24 Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S. Of mice and men: aligning mouse and human anatomies. ??AMIA Annu Symp Proc.?? 2005:61-5. PubMed PMID: 1843689716779002; PubMed Central PMCID: PMC2442262PMC1560846. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1843689716779002]\]
# Komatsoulis GA, Warzel DB, Hartel FW, Shanbhag K, Chilukuri R, Fragoso G, Coronado S, Reeves DM, Hadfield JB, Ludet C, Covitz PA. caCORE version 3: Implementation of a model driven, service-oriented architecture for semantic interoperability.
h3. caCORE and caBIG

# Cimino JJ, Hayamizu TF, Bodenreider O, Davis B, Stafford GA, Ringwald M. The caBIG terminology review process. ??J Biomed Inform.?? 20082009 FebJun;4142(13):106571-2380. Epub 20072008 AprDec 225. PubMed PMID: 1751225919154797; PubMed Central PMCID: PMC2254758PMC2729758. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1751225919154797]\]
# GaoShironoshita QEP, ZhangJean-Mary YLYR, XieBradley ZYRM, Zhang QP, Hu ZZKabuka MR. caCOREsemCDI: corea architecturequery offormulation bioinformationfor onsemantic cancerdata researchintegration in AmericacaBIG. ??BeijingJ DaAm XueMed XueInform BaoAssoc.?? 2006 Apr 18;38(2):218-21. Chinese2008 Jul-Aug;15(4):559-68. Epub 2008 Apr 24. PubMed PMID: 16617371 18436897; PubMed Central PMCID: PMC2442262. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1661737118436897]\]
# Covitz PAKomatsoulis GA, Warzel DB, Hartel FW, Shanbhag FK, SchaeferChilukuri CR, DeFragoso G, Coronado S, FragosoReeves GDM, SahniHadfield HJB, GustafsonLudet SC, BuetowCovitz KHPA. caCORE version 3: Implementation of a common infrastructure model driven, service-oriented architecture for cancersemantic informaticsinteroperability. ??BioinformaticsJ Biomed Inform.?? 20032008 Dec 12Feb;1941(181):2404-12106-23. Epub 2007 Apr 2. PubMed PMID: 14668224 17512259; PubMed Central PMCID: PMC2254758. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1466822417512259]\]

h3. LexEVS

# PathakGao JQ, PetersZhang LYL, ChuteXie CGZY, BodenreiderZhang O.QP, ComparingHu andZZ. evaluatingcaCORE: terminologycore servicesarchitecture applicationof programmingbioinformation interfaces:on RxNav,cancer UMLSKSresearch andin LexBIGAmerica. ??JBeijing AmDa MedXue InformXue AssocBao.?? 2010 Nov-Dec;17(6):714-92006 Apr 18;38(2):218-21. Chinese. PubMed PMID: 20962136; PubMed Central PMCID: PMC300074916617371. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/2096213616617371]\]
# PathakCovitz JPA, SolbrigHartel HRF, BuntrockSchaefer JDC, JohnsonDe Coronado TMS, ChuteFragoso CG. LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime. ??J Am Med Inform Assoc.?? 2009 May-Jun;16(3):305-15. Epub 2009 Mar 4.  PubMed PMID: 19261933; PubMed Central PMCID: PMC2732233G, Sahni H, Gustafson S, Buetow KH. caCORE: a common infrastructure for cancer informatics. ??Bioinformatics.?? 2003 Dec 12;19(18):2404-12. PubMed PMID: 14668224. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1926193314668224]\]

h3. NLPLexEVS

# Crowley RSPathak J, Peters L, TseytlinChute ECG, JukicBodenreider DO. ReportTutorComparing -and anevaluating intelligentterminology tutoringservices systemapplication thatprogramming usesinterfaces: aRxNav, naturalUMLSKS languageand interfaceLexBIG. ??AMIAJ Am AnnuMed SympInform ProcAssoc.?? 2005:171-52010 Nov-Dec;17(6):714-9. PubMed PMID: 1677902420962136; PubMed Central PMCID: PMC1560511PMC3000749. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1677902420962136]\]

h3.# OntologyPathak and Semantics

# Liu K, Chapman WW, Savova GJ, Solbrig HR, Buntrock JD, Johnson TM, Chute CG,. SioutosLexGrid: N,a Crowleyframework RS.for Effectivenessrepresenting, of Lexico-syntactic Pattern Matching for Ontology Enrichment with Clinical Documentsstoring, and querying biomedical terminologies from simple to sublime. ??MethodsJ InfAm Med Inform Assoc.?? 2010: 8;49(6). 2009 May-Jun;16(3):305-15. Epub 2009 Mar 4.  PubMed PMID: 19261933; PubMed Central PMCID: PMC2732233. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/2105772019261933]\]

h3. NLP

# SchulzCrowley SRS, SchoberTseytlin DE, TudoseJukic I,D. StenzhornReportTutor H.- Thean Pitfallsintelligent oftutoring Thesaurussystem Ontologizationthat -uses thea Casenatural of the NCI Thesauruslanguage interface. ??AMIA Annu Symp Proc.?? 2010 Nov 13;2010:727-312005:171-5. PubMed PMID: 2134707416779024; PubMed Central PMCID: PMC3041372PMC1560511. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/2134707416779024]\]

h3. Ontology and Semantics

# NoyLiu NK, TudoracheChapman TWW, deSavova Coronado SG, MusenChute M.CG, DevelopingSioutos biomedicalN, ontologiesCrowley collaborativelyRS. ??AMIAEffectiveness Annuof Symp Proc.?? 2008:520-4Lexico-syntactic Pattern Matching for Ontology Enrichment with Clinical Documents. ??Methods Inf Med.?? 2010: 8;49(6). \[[Available onlinePubMed|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656043/pdf/amia-0520-s2008.pdfpubmed/21057720]\]
# CohenSchulz BS, OrenSchober MD, MinTudose HI, PerlStenzhorn Y,H. Halper M. Automated comparative auditing of NCIT genomic roles using NCBIThe Pitfalls of Thesaurus Ontologization - the Case of the NCI Thesaurus. ??JAMIA Annu BiomedSymp InformProc.?? 20082010 Nov Dec;41(6):904-13. Epub 2008 Mar 2813;2010:727-31. PubMed PMID: 1848655821347074; PubMed Central PMCID: PMC2630966PMC3041372. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1848655821347074]\]
# MouginNoy FN, BodenreiderTudorache O.T, Auditingde theCoronado NCI thesaurus with semantic web technologiesS, Musen M. Developing biomedical ontologies collaboratively. ??AMIA Annu Symp Proc.?? 2008 Nov 6:500520-4. PubMed PMID: 18999265; PubMed Central PMCID: PMC2655981. \[[PubMedAvailable online|http://www.ncbi.nlm.nih.gov/pubmed/18999265/pmc/articles/PMC2656043/pdf/amia-0520-s2008.pdf]\]
# DetwilerCohen LTB, SuciuOren DM, BrinkleyMin JF.H, RegularPerl pathsY, in SparQL: querying the NCI ThesaurusHalper M. Automated comparative auditing of NCIT genomic roles using NCBI. ??AMIAJ AnnuBiomed Symp ProcInform.?? 2008 Nov 6:161-5Dec;41(6):904-13. Epub 2008 Mar 28. PubMed PMID: 1899913718486558; PubMed Central PMCID: PMC2656016PMC2630966. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1899913718486558]\]
# MinMougin HF, CohenBodenreider B,O. HalperAuditing M,the OrenNCI M,thesaurus Perlwith Y.semantic Detecting role errors in the gene hierarchy of the NCI Thesaurusweb technologies. ??Cancer InformAMIA Annu Symp Proc.?? 2008; Nov 6:293500-3134. PubMed PMID: 1922160618999265; PubMed Central PMCID: PMC2623310PMC2655981. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1922160618999265]\]
# Zhang S Detwiler LT, Suciu D, BodenreiderBrinkley OJF. ExperienceRegular paths in Aligning Anatomical OntologiesSparQL: querying the NCI Thesaurus. ??IntAMIA JAnnu Semant Web Inf SystSymp Proc.?? 2007;3(2):1-26 2008 Nov 6:161-5. PubMed PMID: 1897485418999137; PubMed Central PMCID: PMC2575410PMC2656016. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1897485418999137]\]
# Min H, Perl Y, Chen YCohen B, Halper M, GellerOren JM, WangPerl Y. AuditingDetecting asrole parterrors ofin the gene terminologyhierarchy of designthe lifeNCI cycleThesaurus. ??JCancer Am Med Inform Assoc.?? 2006 Nov-Dec;13(6):676-90.  Epub 2006 Aug 23. 2008;6:293-313. PubMed PMID: 1692904419221606; PubMed Central PMCID: PMC1656963PMC2623310. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1692904419221606]\]
# CiminoZhang JJS, ZhuBodenreider XO. TheExperience practicalin impactAligning ofAnatomical ontologies on biomedical informatics. ??Yearb Med InformOntologies. ??Int J Semant Web Inf Syst.?? 2006:124-35. Review2007;3(2):1-26. PubMed PMID: 1705130618974854; PubMed Central PMCID: PMC2575410. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1705130618974854]\]
# Ceusters W, Smith B, Goldberg L. A terminological and ontological analysis Min H, Perl Y, Chen Y, Halper M, Geller J, Wang Y. Auditing as part of the terminology NCIdesign life Thesauruscycle. ??MethodsJ InfAm Med Inform Assoc.?? 2005;44(42006 Nov-Dec;13(6):498676-50790. PubMed PMID: 16342916. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/16342916]\]


h2. Pending Processing

h3. PubMed records

# Nadkarni PM, Brandt CA. The Common Data Elements for cancer research: remarks on functions and structure. ??Methods Inf Med.?? 2006;45(6):594-601Epub 2006 Aug 23. PubMed PMID: 1714950016929044; PubMed Central PMCID: PMC2980785PMC1656963. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1714950016929044]\]
# ZhangCimino SJJ, BodenreiderZhu OX. AlignmentThe ofpractical multipleimpact ontologies of anatomy:ontologies derivingon indirect mappings from direct mappings to a referencebiomedical informatics. ??AMIAYearb AnnuMed Symp ProcInform.??  20052006:864124-835. PubMed PMID: 16779163; PubMed Central PMCID: PMC1560629Review. PubMed PMID: 17051306. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1677916317051306]\]
# BodenreiderCeusters OW, HayamizuSmith TFB, Ringwald M, De Coronado S, Zhang S. Of miceGoldberg L. A terminological and men:ontological aligninganalysis mouseof andthe humanNCI anatomiesThesaurus. ??AMIAMethods AnnuInf Symp ProcMed.?? 2005;44(4):61498-5507. PubMed PMID: 16779002; PubMed Central PMCID: PMC156084616342916. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1677900216342916]\]


h2. Pending Processing

h3. PubMed records

# CeustersNadkarni WPM, Smith B, Goldberg L. A terminological and ontological analysis of the NCI ThesaurusBrandt CA. The Common Data Elements for cancer research: remarks on functions and structure. ??Methods Inf Med.?? 20052006;4445(46):498594-507601. PubMed PMID: 1634291617149500; PubMed Central PMCID: PMC2980785. \[[PubMed|http://www.ncbi.nlm.nih.gov/pubmed/1634291617149500]\]

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