Page History

Recently Released

• UC01
  
  • "Whole exome sequencing analysis of canine urothelial carcinomas without BRAF V595E mutation"
  • North Carolina State University
  • 36 cases, 73 files (1.54 TB)
  • Status: Released on 4/13/23

ICDC Studies in Active Submission

• ORGANOIDS01
  • Approved by SAC on 9/22/22
  • “Characterization of healthy and diseased canine tissues and organoids"
  • Iowa State University
  • Status: Submitters generating template-based loading files and uploading to S3 and Sharepoint
• OSA03
  • Approved by SAC on 4/19/21
  • "Comparative analysis of genome-wide DNA methylation identifies patterns that associate with conserved transcriptional programs in osteosarcoma"
  • University of Minnesota
  • 44 cases
  • Status: Indexing of files is in progress by the DCF team, metadata has been loaded into the ICDC Dev tier

Additional Data Work

• GLIOMA01
  • Submitted metadata and files for 87 histopathology images currently in the TCIA to the Imaging Data Commons so we can access this data through an API.

• 2022 BPSC Review Article
  
  • Cheryl spoke with Doug Thamm, editor of Veterinary and Comparative Oncology which has an impact factor and is open access and he said they would take it

• Thursday April 20, 2023May 18th
• Proposed Agenda:

• Target date is June 20, 2023
• New Features
  • 2 new tabs on the Study Details page, one for supporting data and the other for clinical data observations
  • Full-text search for JBrowse
  • Liftover tracks for gene annotations from human hg38 to canFam genomes
  • Updated UI design for "My Files" page
  • Button for exporting a file manifest directly to the CGC