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Agenda

EVS Discussion

Open System Tickets

Ticket Description Actions, Update
NCI-INC0805939
NCI-INC0805936
CTS2 down on Dev and QA
Met with Systems team to debug on Tu, Feb 27.
Waiting to hear back from Zihua on additional debugging work. 

NCI-RITM0512149

Security consult about IP traffic to Prod
Asked for dynamic IP throttling
NCI-INC0810790Report Exporter issue not avail on VPN
Open, escalated

NCI-RITM0513127

Give Zihua He access to apache logs
Having issues with collectors and access to logs star 

SCTASK0852270

Old Java version (1.7) on processing server
Completed, needs testing

 

Tomcat 9 installation on DEV
Open

NCI-RITM0510137

FTP access for processing
Chuck Solie actively working, being reviewed

SYSTEMS
EVS transition to virtual machines

STATUS:

  • Prod2 server up and running - being tested
    • Reported issues with value set exports - comparable to old Prod
  • DECIDED: conversion first, then transition to VMs.  Likely end of March
  • URLs documented List of EVS URLs



LEXEVS UPDATES

Monthly Planning and Focus

Completed Sprint - Sprint 217 (Feb 2 - Mar 4) -

Current Sprint  - Sprint 218 (Mar 5 - Mar 29) - Sprint 218

For the month of March 2024

  • Report Exporter

    • Start work on templating

  • Improvements, Refactoring Code Debt, Feature development:
  • Implementation of Java 17
  • DataDog
  • NCI Terms Browser
Technical Debt remediation

LexEVS Code Debt Refactoring - Java 17 refactoring currently is in progress

  • Tomcat 9 partially installed on Dev.  Waiting on Java 8 cts2 problems to be resolved before asking for completion
OS Updates
  • QA conversions starting - Dev,QA, Stage updated for LexEVS. Some issues with CTS2 being debugged
    • First group of servers upating this week
    • Next group next week
    • LexEVS not scheduled yet - CTS2 issue
  • Protege and SIP in completed in Dev/QA/Stage
    • Kathy Coleman to notify when ready to go to Prod - plans being developed
Report Exporter
  • Working on templating starting
    • Doing phase 1 - updating description fields. Completed and testing
  • Wait time indicator on Stage
    • Release notes written
    • Staging down, ticket entered
      • Works off VPN but not on VPN
      • Access to logs provided


Security
  • Notification 3/13 that lvg2015 on Processing server needs update as it relies on Java 7
    • lvg on server updated
    • Applications updated on server
      • Coordinate with Chao and Eric


Statistics Dashboard

OBJECTIVE 
Complete Migration of Statistics Dashboard from SumoLogic to DataDog by March 2024.  Hard end in April (ish) - possibly end of June

STATUS

  • S3 bucket has been created
    • Should be working now
    • Needs testing of archiving and refresh
  • RUM installation completed
  • Collectors installed on all servers except evs.nci.nih.gov 
  • No apache logs being pulled in for on-prem servers - Cyrus reaching out to DataDog support
    • Found configuration solution - evsrestapi now returning logs on on-prem prod
    • Need all other logs configured

Link: Sharepoint Project Task Checklist

Comparison/Mapping Tool

On Hold

  • Systems asking if we still want to maintain the dev server for EVSCompare
  • Would need to update to Oracle 7
  • Would need Tomcat and Java updated
AWS Cloud to be in Separate Account

Waiting on AWS team

Team Absences


Mayo Team - Andrew Mar 29, Apr 1

MSC - 

Leidos - 

QA - 

Gov - Mark PTO Apr 23 → May 7th, back on 8th



EVS SERVICE AND ARCHITECTURE GROUP UPDATES
EVS Service and Architecture Group

 


DATA UPDATES
Data

BROWSER UPDATES

Browser
  • Both apps down on QA tier last week
    • Meta back up
    • NCITerms needed redeploy
  • ChEBI loader issue
    • OBO loader was missing qualifier
      • Qualifiers added in 2019, loader written in 2017
    • OWL Loader test had hierarchy issues

QA UPDATES

QA

TERMINOLOGIES LIFECYCLE REPORT

Terminology Updates and Schedule 

Mark Benson TPM UpdateTickets being worked through, several closed

AWS Tagging - request by Systems to add key:value tags for things used for AWS accounts `evstools-prod` , `evstools-non-prod`


Vocabularies Slated for Production

  Terminology Updates and Schedule

...

Vocabulary Name

Local Name

Version

Arrival Date

Loaded to data-qa DB

Date to Stage

Date to Production

Vocabulary Name in LexBIG

Short Name

Version identifier

Date the vocabulary arrived for processing

Has the vocabulary been loaded to the data-qa database?

Approximate date the vocabulary version is scheduled to move to staging

Approximate date the vocabulary version is scheduled to move to production

NCI ThesaurusNCIt24.02d02/27/2024yes03/05/2403/09/24
NCIt-HGNCNCIt-HGNCFeb202402/27/2024yes03/05/2403/09/24
SwissProtSwissProtFeb202402/27/2024yes03/05/2403/09/24
CanMedCanMedFeb202403/09/24yes03/12/2403/17/24
ChEBIChEBIv23103/09/24yes03/12/2403/17/24
HGNCHGNCMar202403/09/24yes03/12/2403/17/24

QA Schedule and Status

see  QA Scheduling and Status

...

Application and Version

Percentage Complete

Estimated Completion Date per Iteration

Priority Level 

Type Of Testing

Current Tier for Release (DEV, QA, Stage, Prod)

Expected Production Date

EVS REST API (v1.6)

100%

5/27/2022

High

Progression + Regression 

QA

6/6/2022

EVS Explore (v1.6)

100%

5/27/2022

High

Progression + Regression

QA

6/6/2022

EVS REST API(v1.6)

100%

6/1/2022

High

Regression

Stage

6/6/2022

EVS Explore(v1.6)

100%

6/2/2022

High

Regression

Stage

6/7/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/1/2022

High

Regression

Stage

6/3/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/3/2022

High

Regression

Production

6/3/2022

EVS REST API(v1.6)

100%

6/6/2022

High

Regression

Production

6/6/2022

EVS Explore(v1.6)

100%

6/7/2022

High

Regression

Production

6/7/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/6/2022

High

Regression

Production

6/8/2022

EVS REST API(22.06d) - Monthly Data Deployment

100%

6/30/2022

High

Regression

Stage , Production

6/30/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment

100%

7/8/2022

High

Smoke

Stage,Production

7/8/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment100%7/8/2022HighSmokeStage,Production7/8/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/12/2022HighSmokeStage7/12/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/13/2022HighSmokeProduction7/13/2022

EVS REST API(22.07d) - Monthly Data Deployment

100%

7/27/2022

High

Regression

Stage , Production

7/27/2022

NCIt,NCIm,TermForm(22.07d) - Monthly Data  Deployment100%8/1/2022HighSmokeStage,Production8/1/2022
NCIt,NCIm,TermForm(CanMED, GO & HGNC AUG 2022 Deployment)100%8/3/2022HighSmokeStage,Production8/3/2022

EVS REST API - 1.6.1 (Hot Fix Deployment)

100 %

8/3/2022

Highest

Progression + Regression

Stage,Production

8/4/2022


Attendees

Name

Role

Present

Remennik, LyubovNIH/NCIcheck mark button 

Safran, Tracy

NIH/NCI [C]
Ong, Kim LNIH/NCI [C]check mark button 
Lucas, Jason RNIH/NCI [C]check mark button 
Bauer, Scott  NIH/NCI [C]
Alkis, BarryNIH/NCI [C]<checked in>
Solie, ChuckNIH/NCI [C]
Kondareddy, SwathiNIH/NCI [C]check mark button
Singh, ItendraNIH/NCI [C]check mark button
Zhang, ChaoNIH/NCI [C]check mark button
Johnson, ConnieNIH/NCI [C]
Whiteman, LoriNIH/NCI [C]
Benson, MarkNIH/NCI [C]check mark button
Andrew MooreNIH/NCI [C]



JIRA Issues


Recent EVS Stats Dashboard Related Bugs and Features 

Jira
serverNCI Tracker
columnIdsissuekey,summary,issuetype,created,reporter,priority,status
columnskey,summary,type,created,reporter,priority,status
maximumIssues20
jqlQueryproject = EVSSTATS and updated >=2023-01-01
serverId7954a81f-12da-3366-a0ef-97c806660e7c

Recent Report Exporter Related Bugs and Features 

|

Jira
serverNCI Tracker
columnIdsissuekey,summary,issuetype,created,reporter,priority,status
columnskey,summary,type,created,reporter,priority,status
maximumIssues20
jqlQueryproject = EVSREPEXP AND updated >=2023-09-01
serverId7954a81f-12da-3366-a0ef-97c806660e7c

Recent LexEVS Related Bugs and Features 

Jira
serverNCI Tracker
columnIdsissuekey,summary,issuetype,created,reporter,priority,status
columnskey,summary,type,created,reporter,priority,status
maximumIssues20
jqlQueryproject = LEXEVS AND updated >= 2023-09-01 AND status in ('OPEN', 'IN PROGRESS', 'QA VERIFIED', 'ON HOLD', 'REOPENED')
serverId7954a81f-12da-3366-a0ef-97c806660e7c

Recent CTS2 Service Related Issues 

Jira
serverNCI Tracker
columnIdsissuekey,summary,issuetype,created,updated,duedate,assignee,reporter,priority,status,resolution
columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
maximumIssues20
jqlQueryproject = LEXEVSCTS2 AND (TYPE = bug or TYPE = "new feature" or TYPE ="Improvement" or TYPE ="Inquiry" or TYPE ="Task" ) AND updated >=2023-09-01
serverId7954a81f-12da-3366-a0ef-97c806660e7c

...