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...
OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
---|---|---|---|---|---|
Document Header | format-version |
| Not mapped. | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date |
| Not mapped. | ||
Document Header | saved-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef |
| Not mapped. | ||
Document Header | import |
| Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref |
| Deprecated. | ||
Document Header | synonymtypedef |
| Not mapped. | ||
Document Header | idspace |
| Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix |
| Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between *any* id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
|
| codingScheme.defaultLanguage | Hardcoded "en" | ||
|
| codingScheme.isNative | Hardcoded "true" | ||
Stanza | id | CodedEntry.conceptCode |
| ||
Stanza | name | CodedEntry.entityDescription |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="24abd9c6c37a2135-e984ef5d-4cff4d7b-a25e872a-ac4579eca9af4ccba621836f"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e04f4cc12b71d0ed-6775de4d-45c44461-ac10bbf1-3be975d3ef8be92a1bc93f00"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].isPreferred = true |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id | CodedEntry.property.property="alt_id" |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="137d0143ee036a12-5445cb72-43a34cb0-a985bd45-34c7b9a84536ee3a74d01191"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].propertyId |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3516adc177b3dbba-1ef47a8b-414442c9-a77591bb-38a46160069b18dde02b4935"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true |
| ||
Stanza | is_obsolete | CodedEntry.isActive = false |
| ||
Stanza | def | CodedEntry.definition |
| ||
|
| CodedEntry.definition.isPreferred = true |
| ||
Stanza | def.dbxref |
| See dbxref | ||
Stanza | comment | CodedEntry.comment.text |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ed29a9119d80b9e4-3b3987c9-4c874474-91c18800-d4d28390c5694405533ee9c0"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="80c28f7dbd02c58f-3201616d-4f5a4a1e-a98aab08-39eb1a04aa04741cb6d0e17b"><ac:plain-text-body><![CDATA[ | Stanza | syonym | presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="40c0cc8d7842d06e-f1b97e36-4c4e48ef-8734a866-8b70af5a717386b0939baeea"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8f8435e3cf2c259b-597b281b-4dff43b1-91d39fa5-375824ae0cac8d249688cab1"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref | (see dbxref) |
| ||
Stanza | exact_synonym |
| See synonym | ||
Stanza | narrow_synonym |
| See synonym | ||
Stanza | broad_synonym |
| See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c51d4ff5ac63ec02-0280db0d-4c604b09-86cc81a5-cc0e9d4180f9511afe26ad0b"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog |
| See synonym | ||
Stanza | xref_unk |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e598616575f78d59-71e18f09-4d684590-95f7bc6f-39c1d60a201566f4271407eb"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of |
| Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of |
| Same as OWL | ||
Stanza | disjoint_from |
| Same as OWL | ||
Stanza | relationship | associations. |
| ||
Stanza | relationship.not_necessary | associations..associationQualifier |
| ||
Stanza | relationship.inverse_necessary | associations..associationQualifier |
| ||
Stanza | relationship.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier |
| ||
Stanza | relationship.cardinality | associations..associationQualifier |
| ||
Stanza | relationship.maxCardinality | associations..associationQualifier |
| ||
Stanza | relationship.minCardinality | associations..associationQualifier |
| ||
Stanza | is_obsolete | codedEntry.isActive = false |
| ||
|
| codedEntry.conceptStatus="is_obsolete" |
| ||
Stanza | replaced_by |
|
| ||
Stanza | consider |
| Not Mapped | ||
Stanza | use_term |
| (deprecated) | ||
dbxref | dbxref name | CodedEntry..source |
| ||
|
| supportedSource | dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description |
| Not mapped. | ||
dbxref | trailing modifiers |
| Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="77c50debd3482e3e-cb770538-4b80458b-92568389-338920c32edd583f70000c5f"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="705bf35a68d56eca-ac583ba8-4d174b90-afa688f5-947226c4daf3affef21c62a7"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="94a50706d6be8001-a3e587c7-41184ae6-a89eb293-59da6c0f1f0b761f18208309"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a7c1f835d9290055-276b273d-465c4888-b9bb9c22-dbf4cf6661035716fc2fe2e3"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isReflexive |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c47bb03147036920-8ea535f0-487d48a4-a202a45d-f7258b47bbf158cc00681375"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isSymmetric |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0d109a86a2bab330-88f97950-49f148ed-adc5b3b6-810952aff5f671f797548d39"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isTransitive |
| ||
typeDef Stanza | inverse_of | association.inverse |
| ||
instance stanza | id | same rules as general stanza | same rules as general stanza | ||
instance stanza | name | same rules as general stanza | same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a4ba8653c4177702-008388ad-4fd949e9-910f851b-6337ac62ec716219a2724ef1"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza |
| CodedEntry.property.property="" | data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes |
|
| |||||
---|---|---|---|---|---|---|---|---|---|---|
|
|
|
| Intentionally Not mapped | Outstanding issues | |||||
Model | <modelID> | <codingSchemeName> |
| |||||||
| <name> | <formalName> |
| |||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f4de899a53df57db-faf828c4-4a5b4f40-88159281-cd29f453a22fb2ed54ea6277"><ac:plain-text-body><![CDATA[ |
|
| <registeredName> | [http://www.hl7.org/Library/data-model/RIM | http://www.hl7.org/Library/data-model/RIM] *[1] | ]]></ac:plain-text-body></ac:structured-macro> | ||||
|
| <defaultLanguage> | en* | |||||||
| <versionNumber> | <representsVersion> |
| |||||||
|
| <isNative> | 0* | |||||||
|
| <approximateNumberofConcepts> | Result of count on concept bearing table? | |||||||
|
| <firstRelease> | MISSING |
|
| |||||
|
| <modifiedRelease> | MISSING |
|
| |||||
|
| <deprecated> | MISSING |
|
| |||||
| <description> | <entityDescription> |
|
|
| |||||
|
| <copyright> | MISSING |
|
| |||||
VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
|
| |||||
| codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
|
| |||||
| codeSystemName | concept.conceptCode | Moved to metadata file. |
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f052fcbb64cb3efa-70a8931c-4d524de4-b073bb12-307ee51babbe3d5c372e54ce"><ac:plain-text-body><![CDATA[ |
| codeSystemName | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| fullName | codingScheme.formalName |
|
|
| |||||
| description | codingScheme.entityDescription | Moved to metadata file. |
|
| |||||
| releaseId | codingScheme.representsVersion | Moved to metadata file. |
|
| |||||
| copyrightNotice | codingScheme.copyright | Moved to metadata file. |
|
| |||||
| literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
|
| |||||
VCS_concept_code_xref | internalId |
|
|
|
| |||||
| Concept Code | concept.conceptCode |
| RIM db column conceptCode2 |
| |||||
| Case Difference | commonTypes::Properties | Basically a proprty to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| |||||
| Status | concept.isActive=(conceptStatus=='A'?) |
| RIM db column conceptStatus |
| |||||
|
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
|
| |||||
VCS_concept_designation | internalId | foreign key |
|
| ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="746eddae7e219d40-833182e3-4283484f-85278861-dca23f04923de52ebd0c2d39"><ac:plain-text-body><![CDATA[ |
| designation | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| designationSeq |
|
|
| ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="08226ff25b8ddaeb-31295b5d-475a4ad4-97449e46-8436c5fc747a96afe6f66467"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ad1d6da053426fed-0d5d6b8d-495e463a-85199ac7-0357d9d9a2e44f6769843143"><ac:plain-text-body><![CDATA[ |
| preferredForLanguage | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="48a80c6221dea551-eb9020fa-4b944007-908ab18d-af41fade917d9e78ddf3c5dc"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0b84dd2b080ca269-7c87070a-42f243fc-b0be8df3-487c822d9a529f704e4dcb5c"><ac:plain-text-body><![CDATA[ |
| description | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5a5ec887627649e1-ef003ac4-4ad04343-b961a07f-9bd0f07add914c405460218a"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3b840ddbb76ec15e-915a2ed7-4cd949be-8c169834-8067731eee902534d146b96f"><ac:plain-text-body><![CDATA[ |
| literal('true') | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="df32bed07b4047c4-19d18853-4ca041a5-bf979bb1-e6c781ee85a2392f7369407d"><ac:plain-text-body><![CDATA[ |
| uniqueId() | concept.presentation['textualPresentation'].propertyId |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="76390ac1906a13a1-c79f3cb7-46a2485d-a8d49c9c-53b2d77cc2865817c679fd57"><ac:plain-text-body><![CDATA[ |
| literal('definition') | concept.presentation['textualPresentation'].property |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
VCS_concept_property | internalId | foreign key |
|
| ||||||
| propertyCode | concept.property.property |
|
|
| |||||
| propertySeq | Currently not used by HL7 |
|
| ||||||
| propartyValue | concept.property.text |
|
|
| |||||
| language | concept.property.language |
|
|
| |||||
VCS_concept_relationship | relationCode | association.association |
|
|
| |||||
| sourceInternalId | associationInstance.sourceConcept |
|
|
| |||||
| targetInternalId | associationTarget.targetConcept |
|
|
| |||||
Model | modelID | systemRelease.releaseId |
|
|
| |||||
| name | service.service |
|
|
| |||||
| versionNumber | service.version |
|
|
| |||||
| lastModifiedDate | systemRelease.releaseDate |
|
|
| |||||
| developingOrganization | systemRelease.releaseAgency |
|
|
| |||||
| committeeID |
|
|
| ||||||
| description | systemRelease.entityDescription |
|
|
| |||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN |
|
|
| |||||
| literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
|
| |||||
| preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder |
|
|
| |||||
Model | modelID | commonTypes::Properties |
|
|
| |||||
(Special mapping for NCI) | name | codingScheme.localName |
|
|
| |||||
| versionNumber | codingScheme.representsVersion |
|
|
| |||||
| lastModifiedDate | commonTypes::Properties |
|
|
| |||||
| developingOrganization | commonTypes::Properties |
|
|
| |||||
| committeeID |
|
|
| ||||||
| description | codingScheme.entityDescription |
|
|
| |||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName |
|
|
| |||||
| literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
|
| |||||
| preceding-sibling/releaseOrder + 1 | commonTypes::Properties |
|
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a6d156a002de3ab6-ce027816-49b7411d-b2f78d5a-21f79709bec7144cf0cec491"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="68db790c2b394adc-be49e1b4-42f14d38-b582bc31-b9a9f54f301e76cc542d38ad"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4d61cdad25434900-c054c7e1-4bb94f94-a210bf5b-dec42ca0fbb20ab34aa8da61"><ac:plain-text-body><![CDATA[ |
| description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b0dfc35e606a9021-901cdb75-45b14fcd-8b0e8b39-0c603a3d9eaac48222f14ae1"><ac:plain-text-body><![CDATA[ |
| restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a92e42eef4d165e7-1da6bc0b-4cad47b2-8ce88a76-8d42c4ba4fda659287900802"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="aede7a075bba660c-55b215e6-44ce4216-a7e2a44d-2e784be2319188c387817aff"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
|
| |||||
| referencesInternalId | Internal id's aren't exposed in lexGrid |
|
| ||||||
| relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
|
| |||||
| includeReferencedCode | ...valueDomainEntry/isSelectable |
| Not in current implementation |
| |||||
| leafOnly | Not used in HL7 Model |
|
| ||||||
| directChildrenOnly | Not used in HL7 Model |
|
| ||||||
| isHeadCode |
| Only used when referenced in VOC_value_set_constructor. |
|
| |||||
| referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
|
| |||||
| arbitraryUniqueValue() | .../valueDomainEntry.id |
|
|
| |||||
VOC_registered_code_system | codeSystemId | VOC_registered_code_system isn't currently transferred to Lexgrid |
|
| ||||||
| sponsor |
|
|
| ||||||
| publisher |
|
|
| ||||||
| versionReportingMethod |
|
|
| ||||||
| licensingInformation | This field should really be transfer to copyright? |
|
| ||||||
| inUMLS |
|
|
| ||||||
| systemSpecificLocatorInfo |
|
|
| ||||||
| uri |
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| isExternal |
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VOC_value_set | valueSetId | valueDomain.registeredName |
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| valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
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| basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
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| description | valueDomain.entityDescription |
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| definingExpression | Not used. |
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| allCodes | if 'true': valueDomain.conceptCode = "@", valueDomain.includeChildren='true' |
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| isTaxonomicSet | No mapping available |
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| valueSetAuthority | Included in valueSetID |
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| valueSetNumber |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4753a16abb5ad7dd-f93471d4-4cd14262-9320b3ec-24f8983f4e0e03994233a849"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) |
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| ]]></ac:plain-text-body></ac:structured-macro> | |||
| includesOrExcludesSet | valueDomainEntry.includesValueDomain |
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| includeHeadCode | valueDomainEntry.isSelectable |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c1b04937674acd2e-0088c6ba-4fe94b5e-97e4b7f7-d5f738657a836307cbf930bb"><ac:plain-text-body><![CDATA[ |
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| valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode | Assumes that there always is a head code. |
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| ]]></ac:plain-text-body></ac:structured-macro> | |||
VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cfed574a89147c45-f94d2204-4e2245f2-baa6ac99-126eb271f3a48e78b35229e5"><ac:plain-text-body><![CDATA[ |
| definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f9cea1436c4e7b54-b46acee1-4cc84fe5-88c5ad8e-d45ff436aa2ac04206d19845"><ac:plain-text-body><![CDATA[ |
| appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
VCS_release_version | releaseId | codingSchemeVersion.version |
This Note: this is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
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| valueDomainVersion.version | Set iff one or more value sets change |
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| literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
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| releaseAgency |
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| releaseDate | codingSchemeVersion.versionDate |
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| valueDomainVersion.versionDate |
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| |||||
| description | codingSchemeVersion.entityDescription |
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| valueDomainVersion.entityDescription |
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| |||||
| editorID | There is no place for these currently. |
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| ||||||
| forWhomID |
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| |||||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) |
| This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
|
|
LexGrid Text Mapping
LexGrid Text Mapping
|
|
| Source Definition |
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| Comments | ||
|
| Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bd6d00e46e141c51-ffce776d-463940da-8048ab5b-508e04e81019c74dfa4e7cb0"><ac:plain-text-body><![CDATA[ | Line | 1 |
| <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | [<version>] | [<source>] | [<description>] | [<copyright>] | This must be the first line. It contains the coding scheme metadata. | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5173c6ad41bbed82-93291da5-46364655-bd97a7ef-214663c3ed26abda36daeb1e"><ac:plain-text-body><![CDATA[ | 2 |
| [<code>] | <name> | [<description>] |
|
|
|
|
| Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> | |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="48ec97c670797c2d-8cb4b5a1-410147fb-bb77bda7-6dfcc42957e0aa8f46f93547"><ac:plain-text-body><![CDATA[ | 3 |
|
| [<code>] | <name> | [<description>] |
|
|
|
| Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
Text Element | LexGrid | Comments | |
---|---|---|---|
Coding Scheme |
| Coding Scheme | |
codingSchemeName | codingScheme.codingSchemeName |
| |
codingSchemeId | codingScheme.codingSchemeId |
| |
defaultLanguage | codingScheme.defaultLanguage |
|
|
formalName | codingScheme.formalName |
| |
version | codingScheme.representsVersion | Optional |
|
source | codingScheme.source | Optional | |
description | codingScheme.entityDescription | Optional | |
copyright | codingScheme.copyright | Optional | |
| Concepts |
| Concepts |
code | concept.conceptCode | Optional |
|
name | concept.conceptName |
| |
description | concept.entityDescription |
|
...