Page History
...
OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
---|---|---|---|---|---|
Document Header | format-version |
| Not mapped. | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date |
| Not mapped. | ||
Document Header | saved-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef |
| Not mapped. | ||
Document Header | import |
| Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref |
| Deprecated. | ||
Document Header | synonymtypedef |
| Not mapped. | ||
Document Header | idspace |
| Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix |
| Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between *any* id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
|
| codingScheme.defaultLanguage | Hardcoded "en" | ||
|
| codingScheme.isNative | Hardcoded "true" | ||
Stanza | id | CodedEntry.conceptCode |
| ||
Stanza | name | CodedEntry.entityDescription |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bd4e915c0eba301b-cb8857da-4bf64f9a-a94ebee7-3e6c09351f4a282555c578aa"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a54ef83333e8579c-8e54276a-418e42c0-83b28e2c-d1426ca268d066e0371abce6"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].isPreferred = true |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id | CodedEntry.property.property="alt_id" |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="24e57beeabbf7512-1d99c662-4a2241d1-b071a76c-bb1ca171008ea05ccf84e6f1"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].propertyId |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d6f0a42969794834-4613f018-496a43a6-a772b9c2-f2a28c098d3a33a264600cb9"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true |
| ||
Stanza | is_obsolete | CodedEntry.isActive = false |
| ||
Stanza | def | CodedEntry.definition |
| ||
|
| CodedEntry.definition.isPreferred = true |
| ||
Stanza | def.dbxref |
| See dbxref | ||
Stanza | comment | CodedEntry.comment.text |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e04077a19f2b9637-1784423e-401941fd-bd328d9b-981c17579adb8abbae310089"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="91c79dba8998eac7-4ba6a0b8-4361411f-82239d5a-8f249c318480a7b95d5ae588"><ac:plain-text-body><![CDATA[ | Stanza | syonym | presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8604cab4988b1eb9-085dd68d-40fa43a4-816e954c-db73c4f3a7126bbb6d7ddb03"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="02f496384dae3521-a20bca40-474e40e2-ac4d8520-6ca1bb70f906c7a257f58e4f"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref | (see dbxref) |
| ||
Stanza | exact_synonym |
| See synonym | ||
Stanza | narrow_synonym |
| See synonym | ||
Stanza | broad_synonym |
| See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7916e27acc66e1ea-4d82b82f-4c584f78-a7a186af-85f2cfea447740c8e83761ba"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog |
| See synonym | ||
Stanza | xref_unk |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dd39eef5f2746b5b-50e2caff-4f7147b0-9eafbee5-72169d417f6e4551483d3d51"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of |
| Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of |
| Same as OWL | ||
Stanza | disjoint_from |
| Same as OWL | ||
Stanza | relationship | associations. |
| ||
Stanza | relationship.not_necessary | associations..associationQualifier |
| ||
Stanza | relationship.inverse_necessary | associations..associationQualifier |
| ||
Stanza | relationship.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier |
| ||
Stanza | relationship.cardinality | associations..associationQualifier |
| ||
Stanza | relationship.maxCardinality | associations..associationQualifier |
| ||
Stanza | relationship.minCardinality | associations..associationQualifier |
| ||
Stanza | is_obsolete | codedEntry.isActive = false |
| ||
|
| codedEntry.conceptStatus="is_obsolete" |
| ||
Stanza | replaced_by |
|
| ||
Stanza | consider |
| Not Mapped | ||
Stanza | use_term |
| (deprecated) | ||
dbxref | dbxref name | CodedEntry..source |
| ||
|
| supportedSource | dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description |
| Not mapped. | ||
dbxref | trailing modifiers |
| Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="395731844ed1a245-ae92e801-42974af0-89b19a34-411ad28ce5bfc65a8b60a002"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a5f45e943a2cc4ad-716522ad-486941ec-9072a108-5dfbfb88320d60fcf231b833"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b4870441cb63fe0a-7cc9ae26-4856463b-8f8a96f3-dbb8dcc12fc98e398490722f"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9f9024307ae5d064-8ad13b73-467e4277-8670a50e-f47749996bcf71acbb3f591b"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isReflexive |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dc4ac4e48b76cf80-8f317996-4e794a4d-9dff80f3-8bf7d73a82b3999f856893a7"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isSymmetric |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="15cf0ce8ff86866e-3d30559b-4595407e-ac8092c2-baaf905339f17e2c2c4ade08"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isTransitive |
| ||
typeDef Stanza | inverse_of | association.inverse |
| ||
instance stanza | id | same rules as general stanza | same rules as general stanza | ||
instance stanza | name | same rules as general stanza | same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="86e14f0195143978-33687245-47144394-9ff6984f-a7405b230c9501aa40537c31"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza |
| CodedEntry.property.property="" | data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes |
|
| |||||
---|---|---|---|---|---|---|---|---|---|---|
|
|
|
| Intentionally Not mapped | Outstanding issues | |||||
Model | <modelID> | <codingSchemeName> |
| |||||||
| <name> | <formalName> |
| |||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="37e6372dd84a0c2f-163da5cb-48374f55-a5e2a7d5-b04ef674f921789e2eb90912"><ac:plain-text-body><![CDATA[ |
|
| <registeredName> | [http://www.hl7.org/Library/data-model/RIM | http://www.hl7.org/Library/data-model/RIM] *[1] | ]]></ac:plain-text-body></ac:structured-macro> | ||||
|
| <defaultLanguage> | en* | |||||||
| <versionNumber> | <representsVersion> |
| |||||||
|
| <isNative> | 0* | |||||||
|
| <approximateNumberofConcepts> | Result of count on concept bearing table? | |||||||
|
| <firstRelease> | MISSING |
|
| |||||
|
| <modifiedRelease> | MISSING |
|
| |||||
|
| <deprecated> | MISSING |
|
| |||||
| <description> | <entityDescription> |
|
|
| |||||
|
| <copyright> | MISSING |
|
| |||||
VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
|
| |||||
| codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
|
| |||||
| codeSystemName | concept.conceptCode | Moved to metadata file. |
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5ec2aa3845e6662a-a9481a89-45a540a9-a2d38af6-709c0e570b433a77b16088bd"><ac:plain-text-body><![CDATA[ |
| codeSystemName | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| fullName | codingScheme.formalName |
|
|
| |||||
| description | codingScheme.entityDescription | Moved to metadata file. |
|
| |||||
| releaseId | codingScheme.representsVersion | Moved to metadata file. |
|
| |||||
| copyrightNotice | codingScheme.copyright | Moved to metadata file. |
|
| |||||
| literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
|
| |||||
VCS_concept_code_xref | internalId |
|
|
|
| |||||
| Concept Code | concept.conceptCode |
| RIM db column conceptCode2 |
| |||||
| Case Difference | commonTypes::Properties | Basically a proprty to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| |||||
| Status | concept.isActive=(conceptStatus=='A'?) |
| RIM db column conceptStatus |
| |||||
|
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
|
| |||||
VCS_concept_designation | internalId | foreign key |
|
| ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="28ef07c04ee74a95-7d66e610-46ea474e-8cc0ac1c-c311712bf4ab193bf2337f12"><ac:plain-text-body><![CDATA[ |
| designation | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| designationSeq |
|
|
| ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0b85f80be31e2ce9-2aa1492f-46884355-af5285d2-0db99ce78049ede08e8d2deb"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3550f575ddcc9669-d23a4700-48a14a4d-b1f6906d-f793e75d6f85da5c11f852d5"><ac:plain-text-body><![CDATA[ |
| preferredForLanguage | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e9b67acb7dccf974-5183ad26-47b34bc8-80f9a142-9f98ab298d90e55574082907"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8fad858f0e867f15-e1470e83-46974cee-ab30846f-b38a6ffbe8968db443b4d86b"><ac:plain-text-body><![CDATA[ |
| description | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="57642e961d5cc446-60aa071d-43f34588-af7ba87b-f7977957261e670416b97d14"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3a65ca506f53c68c-2db4380e-46e94ae9-a61fb472-04c6f855f3145f1347d3e5a4"><ac:plain-text-body><![CDATA[ |
| literal('true') | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="eb637bc4f23607c3-0ac38a56-4bd34293-bdceb043-bd4d47198e4295103ae81a14"><ac:plain-text-body><![CDATA[ |
| uniqueId() | concept.presentation['textualPresentation'].propertyId |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c725c320a8e30d5b-39c22081-470f42b1-a7ec9aef-18b60d9b6589fb5b4003ae64"><ac:plain-text-body><![CDATA[ |
| literal('definition') | concept.presentation['textualPresentation'].property |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
VCS_concept_property | internalId | foreign key |
|
| ||||||
| propertyCode | concept.property.property |
|
|
| |||||
| propertySeq | Currently not used by HL7 |
|
| ||||||
| propartyValue | concept.property.text |
|
|
| |||||
| language | concept.property.language |
|
|
| |||||
VCS_concept_relationship | relationCode | association.association |
|
|
| |||||
| sourceInternalId | associationInstance.sourceConcept |
|
|
| |||||
| targetInternalId | associationTarget.targetConcept |
|
|
| |||||
Model | modelID | systemRelease.releaseId |
|
|
| |||||
| name | service.service |
|
|
| |||||
| versionNumber | service.version |
|
|
| |||||
| lastModifiedDate | systemRelease.releaseDate |
|
|
| |||||
| developingOrganization | systemRelease.releaseAgency |
|
|
| |||||
| committeeID |
|
|
| ||||||
| description | systemRelease.entityDescription |
|
|
| |||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN |
|
|
| |||||
| literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
|
| |||||
| preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder |
|
|
| |||||
Model | modelID | commonTypes::Properties |
|
|
| |||||
(Special mapping for NCI) | name | codingScheme.localName |
|
|
| |||||
| versionNumber | codingScheme.representsVersion |
|
|
| |||||
| lastModifiedDate | commonTypes::Properties |
|
|
| |||||
| developingOrganization | commonTypes::Properties |
|
|
| |||||
| committeeID |
|
|
| ||||||
| description | codingScheme.entityDescription |
|
|
| |||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName |
|
|
| |||||
| literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
|
| |||||
| preceding-sibling/releaseOrder + 1 | commonTypes::Properties |
|
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="80715a01c57403f0-f19dc9ee-47804823-a41b969f-0060afa774ac4420ea334118"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f2ff01e81ecf9f0d-6f67be1a-4f8244d3-946b809d-cc40de08e64f07dc7e1bc7f0"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2f7726da11ebb17f-e90f7091-4c5b4bdf-9475a767-8b773c141749af21a29b7057"><ac:plain-text-body><![CDATA[ |
| description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e4a8abe11948bcc5-bb07feed-4fe74fd4-b54b970d-8de3ca71fbd8322e1edd5c2e"><ac:plain-text-body><![CDATA[ |
| restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5dff4b9c065f4f8a-def18415-448d4758-bca6b6c3-2ce5e8cfa83f32c7aae9abdc"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7e56678d461f85db-02a9fe21-4ccf4a03-99059036-3adbf17af6dd4ed57d81af46"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
|
| |||||
| referencesInternalId | Internal id's aren't exposed in lexGrid |
|
| ||||||
| relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
|
| |||||
| includeReferencedCode | ...valueDomainEntry/isSelectable |
| Not in current implementation |
| |||||
| leafOnly | Not used in HL7 Model |
|
| ||||||
| directChildrenOnly | Not used in HL7 Model |
|
| ||||||
| isHeadCode |
| Only used when referenced in VOC_value_set_constructor. |
|
| |||||
| referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
|
| |||||
| arbitraryUniqueValue() | .../valueDomainEntry.id |
|
|
| |||||
VOC_registered_code_system | codeSystemId | VOC_registered_code_system isn't currently transferred to Lexgrid |
|
| ||||||
| sponsor |
|
|
| ||||||
| publisher |
|
|
| ||||||
| versionReportingMethod |
|
|
| ||||||
| licensingInformation | This field should really be transfer to copyright? |
|
| ||||||
| inUMLS |
|
|
| ||||||
| systemSpecificLocatorInfo |
|
|
| ||||||
| uri |
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| isExternal |
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VOC_value_set | valueSetId | valueDomain.registeredName |
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| valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
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| basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
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| description | valueDomain.entityDescription |
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| definingExpression | Not used. |
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| allCodes | if 'true': valueDomain.conceptCode = "@", valueDomain.includeChildren='true' |
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| isTaxonomicSet | No mapping available |
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| valueSetAuthority | Included in valueSetID |
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| valueSetNumber |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ddf75bd922b4fca6-bc1440be-40c34745-b1658e03-24b182a02a1c39c7eeea7df9"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) |
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| ]]></ac:plain-text-body></ac:structured-macro> | |||
| includesOrExcludesSet | valueDomainEntry.includesValueDomain |
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| includeHeadCode | valueDomainEntry.isSelectable |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dbceb8f3814ef28b-8382c139-4821412e-b33e9644-e897ea54553e46c9c049ccef"><ac:plain-text-body><![CDATA[ |
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| valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode | Assumes that there always is a head code. |
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| ]]></ac:plain-text-body></ac:structured-macro> | |||
VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d53b8ec55704f80f-904d67d0-47f0468b-8434ba81-5c8b3d63c4e63c1be8988bf7"><ac:plain-text-body><![CDATA[ |
| definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="911a46db4e6edf19-6fa60b6e-40d64568-80b889a0-fb3d23c20c2375163fb5f71c"><ac:plain-text-body><![CDATA[ |
| appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
VCS_release_version | releaseId | codingSchemeVersion.version |
This Note: this is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
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| valueDomainVersion.version | Set iff one or more value sets change |
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| literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
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| releaseAgency |
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| releaseDate | codingSchemeVersion.versionDate |
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| valueDomainVersion.versionDate |
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| description | codingSchemeVersion.entityDescription |
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| valueDomainVersion.entityDescription |
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| editorID | There is no place for these currently. |
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| ||||||
| forWhomID |
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| |||||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) |
| This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
|
|
LexGrid Text Mapping
LexGrid Text Mapping
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|
| Source Definition |
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| Comments | ||
|
| Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="133d1c1b934b8219-86f2e82b-4b114eac-85ccba9e-7c7fb58fd2c07f27524b21e3"><ac:plain-text-body><![CDATA[ | Line | 1 |
| <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | [<version>] | [<source>] | [<description>] | [<copyright>] | This must be the first line. It contains the coding scheme metadata. | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e63cc0612bfdb4f9-c86e6ff1-417e4611-ab4c94fd-8b26193326a65e2ba8b7ff0c"><ac:plain-text-body><![CDATA[ | 2 |
| [<code>] | <name> | [<description>] |
|
|
|
|
| Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> | |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ae1b885a8c03be0d-c36074ce-4b0c4d76-bcc0b435-1336d99c08e057cdffa1d84b"><ac:plain-text-body><![CDATA[ | 3 |
|
| [<code>] | <name> | [<description>] |
|
|
|
| Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
Text Element | LexGrid | Comments | |
---|---|---|---|
Coding Scheme |
| Coding Scheme | |
codingSchemeName | codingScheme.codingSchemeName |
| |
codingSchemeId | codingScheme.codingSchemeId |
| |
defaultLanguage | codingScheme.defaultLanguage |
|
|
formalName | codingScheme.formalName |
| |
version | codingScheme.representsVersion | Optional |
|
source | codingScheme.source | Optional | |
description | codingScheme.entityDescription | Optional | |
copyright | codingScheme.copyright | Optional | |
| Concepts |
| Concepts |
code | concept.conceptCode | Optional |
|
name | concept.conceptName |
| |
description | concept.entityDescription |
|
...