Page History
...
OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
---|---|---|---|---|---|
Document Header | format-version |
| Not mapped. | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date |
| Not mapped. | ||
Document Header | saved-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef |
| Not mapped. | ||
Document Header | import |
| Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref |
| Deprecated. | ||
Document Header | synonymtypedef |
| Not mapped. | ||
Document Header | idspace |
| Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix |
| Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between *any* id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
|
| codingScheme.defaultLanguage | Hardcoded "en" | ||
|
| codingScheme.isNative | Hardcoded "true" | ||
Stanza | id | CodedEntry.conceptCode |
| ||
Stanza | name | CodedEntry.entityDescription |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0ebecb0c796c83b5-2d99c20a-4b064d5a-8ebf96f9-3bb74e960d04d7b81ae74d32"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5378ac16e7c03f43-6cf14389-4c4443ac-ad899fbd-c806202b8c56fdd1c9191456"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].isPreferred = true |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id | CodedEntry.property.property="alt_id" |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5f99831fc9fe5022-88e40316-464c45fe-bb23b5a6-896803a9ff5b3345a94be79c"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].propertyId |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="53d4116a3f8f6d1f-b2cf3022-4be2456b-8e86a403-1999a67bfc5b51b3be0ea04b"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true |
| ||
Stanza | is_obsolete | CodedEntry.isActive = false |
| ||
Stanza | def | CodedEntry.definition |
| ||
|
| CodedEntry.definition.isPreferred = true |
| ||
Stanza | def.dbxref |
| See dbxref | ||
Stanza | comment | CodedEntry.comment.text |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0f8d39ae494996d7-945e05be-48ef47d7-b8deb0dd-d7a5955f00a10345131d47e7"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f345ce9dfcb873c0-8e78b570-4de84d9d-87c88550-296727ef98d51f2c883d9bb5"><ac:plain-text-body><![CDATA[ | Stanza | syonym | presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="37be5a542bbd859b-af9a3966-40e44413-b3e4883a-c46a747a7e0517f69f4f521f"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a7468056d7bf3a65-10add587-47624d1b-9be88df1-bfac0dfb7682a39e47350ec3"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref | (see dbxref) |
| ||
Stanza | exact_synonym |
| See synonym | ||
Stanza | narrow_synonym |
| See synonym | ||
Stanza | broad_synonym |
| See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1fbe1c883fd86cd5-eb973aec-48284730-82b8b6a1-e93b864883b1aeefce65c0c3"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog |
| See synonym | ||
Stanza | xref_unk |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cf60e3be45f89c64-12010f2b-42cd42df-982ebbf9-44ab583086d9eaa974a5283c"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of |
| Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of |
| Same as OWL | ||
Stanza | disjoint_from |
| Same as OWL | ||
Stanza | relationship | associations. |
| ||
Stanza | relationship.not_necessary | associations..associationQualifier |
| ||
Stanza | relationship.inverse_necessary | associations..associationQualifier |
| ||
Stanza | relationship.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier |
| ||
Stanza | relationship.cardinality | associations..associationQualifier |
| ||
Stanza | relationship.maxCardinality | associations..associationQualifier |
| ||
Stanza | relationship.minCardinality | associations..associationQualifier |
| ||
Stanza | is_obsolete | codedEntry.isActive = false |
| ||
|
| codedEntry.conceptStatus="is_obsolete" |
| ||
Stanza | replaced_by |
|
| ||
Stanza | consider |
| Not Mapped | ||
Stanza | use_term |
| (deprecated) | ||
dbxref | dbxref name | CodedEntry..source |
| ||
|
| supportedSource | dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description |
| Not mapped. | ||
dbxref | trailing modifiers |
| Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5116c7796a7273a1-746d3d54-43d54522-abeca40a-f3d1e7eecf870c97ee45cdaf"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="16a74c71c31e6aa6-2cb86177-47b64944-b9298fee-211aeffe7f0fc06f06da83e4"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="019378c0d5c6c3fa-dc23efe3-42834476-86e88228-88e9648f6d0c22a524e4c0f6"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fe8f05681975f7aa-cde85f08-4c4248d6-b87093d9-4720d50f664976843754b0a4"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isReflexive |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2d8e1484c171140e-8c3074e9-4bfc4e6d-a0c19a41-d023576be4f588eb79393078"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isSymmetric |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dfad684b5a274b03-3ae5f02c-405f43f8-98ff8458-1f80290c04c872e685a710b0"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isTransitive |
| ||
typeDef Stanza | inverse_of | association.inverse |
| ||
instance stanza | id | same rules as general stanza | same rules as general stanza | ||
instance stanza | name | same rules as general stanza | same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a27e1cb73e25ea90-124f0a04-4a154601-a3e68c71-15d413fe0c954778c06d1c16"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza |
| CodedEntry.property.property="" | data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes |
|
| |||||
---|---|---|---|---|---|---|---|---|---|---|
|
|
|
| Intentionally Not mapped | Outstanding issues | |||||
Model | <modelID> | <codingSchemeName> |
| |||||||
| <name> | <formalName> |
| |||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f4bf02c1c5a3fc70-ed41f4f8-4baf4e93-b4f98041-53f8084e1876d34419f59700"><ac:plain-text-body><![CDATA[ |
|
| <registeredName> | [http://www.hl7.org/Library/data-model/RIM | http://www.hl7.org/Library/data-model/RIM] *[1] | ]]></ac:plain-text-body></ac:structured-macro> | ||||
|
| <defaultLanguage> | en* | |||||||
| <versionNumber> | <representsVersion> |
| |||||||
|
| <isNative> | 0* | |||||||
|
| <approximateNumberofConcepts> | Result of count on concept bearing table? | |||||||
|
| <firstRelease> | MISSING |
|
| |||||
|
| <modifiedRelease> | MISSING |
|
| |||||
|
| <deprecated> | MISSING |
|
| |||||
| <description> | <entityDescription> |
|
|
| |||||
|
| <copyright> | MISSING |
|
| |||||
VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
|
| |||||
| codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
|
| |||||
| codeSystemName | concept.conceptCode | Moved to metadata file. |
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="72c4d0994c952d01-8b12058c-486d412d-bafc9f55-37703d85cbb43c628751b2bd"><ac:plain-text-body><![CDATA[ |
| codeSystemName | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| fullName | codingScheme.formalName |
|
|
| |||||
| description | codingScheme.entityDescription | Moved to metadata file. |
|
| |||||
| releaseId | codingScheme.representsVersion | Moved to metadata file. |
|
| |||||
| copyrightNotice | codingScheme.copyright | Moved to metadata file. |
|
| |||||
| literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
|
| |||||
VCS_concept_code_xref | internalId |
|
|
|
| |||||
| Concept Code | concept.conceptCode |
| RIM db column conceptCode2 |
| |||||
| Case Difference | commonTypes::Properties | Basically a proprty to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| |||||
| Status | concept.isActive=(conceptStatus=='A'?) |
| RIM db column conceptStatus |
| |||||
|
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
|
| |||||
VCS_concept_designation | internalId | foreign key |
|
| ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f7c2a9f0474ff955-f0b9e6ea-4d7648b7-91e7867e-795daf2fbf08936ce4b597c6"><ac:plain-text-body><![CDATA[ |
| designation | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| designationSeq |
|
|
| ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a1652eebb1473798-fe65fd18-469b4e6c-84fab576-ea73edb46aad92b83f649ece"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="715dd6c9ddefba2f-d03ee03a-42594802-b58084fe-122c3d533aed6db863a2fb74"><ac:plain-text-body><![CDATA[ |
| preferredForLanguage | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="547c58d7af7621df-f85c6bf0-4e3547cf-acb19ed7-5e02d17acfb4a116b398d21d"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1cba573aafdc5c63-587a0d77-40404268-af2aa4de-0368325a7c41626a795f5bce"><ac:plain-text-body><![CDATA[ |
| description | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="58a97510e219b7d5-638fdeb9-4c364103-a7dd99a3-942c1aa4cf16371b928256b3"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7f780fccaae9ab1d-4067f9b0-439242fc-b794bf04-fb709048524290638becc42e"><ac:plain-text-body><![CDATA[ |
| literal('true') | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f580f268b61e8f12-6d46010b-44f8412c-91368ed0-0e0caf16b6f2ea640af26e85"><ac:plain-text-body><![CDATA[ |
| uniqueId() | concept.presentation['textualPresentation'].propertyId |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="96ffe8af6d55fb6e-eef9d549-418b4baa-b2bfb190-b837e96f0baa3d02b7016068"><ac:plain-text-body><![CDATA[ |
| literal('definition') | concept.presentation['textualPresentation'].property |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
VCS_concept_property | internalId | foreign key |
|
| ||||||
| propertyCode | concept.property.property |
|
|
| |||||
| propertySeq | Currently not used by HL7 |
|
| ||||||
| propartyValue | concept.property.text |
|
|
| |||||
| language | concept.property.language |
|
|
| |||||
VCS_concept_relationship | relationCode | association.association |
|
|
| |||||
| sourceInternalId | associationInstance.sourceConcept |
|
|
| |||||
| targetInternalId | associationTarget.targetConcept |
|
|
| |||||
Model | modelID | systemRelease.releaseId |
|
|
| |||||
| name | service.service |
|
|
| |||||
| versionNumber | service.version |
|
|
| |||||
| lastModifiedDate | systemRelease.releaseDate |
|
|
| |||||
| developingOrganization | systemRelease.releaseAgency |
|
|
| |||||
| committeeID |
|
|
| ||||||
| description | systemRelease.entityDescription |
|
|
| |||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN |
|
|
| |||||
| literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
|
| |||||
| preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder |
|
|
| |||||
Model | modelID | commonTypes::Properties |
|
|
| |||||
(Special mapping for NCI) | name | codingScheme.localName |
|
|
| |||||
| versionNumber | codingScheme.representsVersion |
|
|
| |||||
| lastModifiedDate | commonTypes::Properties |
|
|
| |||||
| developingOrganization | commonTypes::Properties |
|
|
| |||||
| committeeID |
|
|
| ||||||
| description | codingScheme.entityDescription |
|
|
| |||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName |
|
|
| |||||
| literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
|
| |||||
| preceding-sibling/releaseOrder + 1 | commonTypes::Properties |
|
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a6f3576df2925cc9-463cf6b4-4bce491b-84c8831d-d239ac3810a726bd7671a16c"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="983a342e98c2da6a-7b9ae09e-42964651-a3e6ac7b-64688d4236ed93976ff0bee7"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="05ce49dd6039b6f8-b7f25a17-4b8e4eec-af07ac64-a2c9b48577b1de29c5318ca1"><ac:plain-text-body><![CDATA[ |
| description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9861bdda3c8c5108-3d3c6120-47054299-807ea513-b9a4738378ccf01d8c9b5e8b"><ac:plain-text-body><![CDATA[ |
| restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="204fb6499c6a7647-dc1a8978-47864347-8f7c9ca8-a8ec60c58630dd717b1f9914"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="526c013207f5d168-8cae0eab-4c3a4838-853b8578-a61094523b37e3849c5c3e84"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
|
| |||||
| referencesInternalId | Internal id's aren't exposed in lexGrid |
|
| ||||||
| relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
|
| |||||
| includeReferencedCode | ...valueDomainEntry/isSelectable |
| Not in current implementation |
| |||||
| leafOnly | Not used in HL7 Model |
|
| ||||||
| directChildrenOnly | Not used in HL7 Model |
|
| ||||||
| isHeadCode |
| Only used when referenced in VOC_value_set_constructor. |
|
| |||||
| referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
|
| |||||
| arbitraryUniqueValue() | .../valueDomainEntry.id |
|
|
| |||||
VOC_registered_code_system | codeSystemId | VOC_registered_code_system isn't currently transferred to Lexgrid |
|
| ||||||
| sponsor |
|
|
| ||||||
| publisher |
|
|
| ||||||
| versionReportingMethod |
|
|
| ||||||
| licensingInformation | This field should really be transfer to copyright? |
|
| ||||||
| inUMLS |
|
|
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| systemSpecificLocatorInfo |
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| uri |
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| isExternal |
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VOC_value_set | valueSetId | valueDomain.registeredName |
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| valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
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| basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
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| description | valueDomain.entityDescription |
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| definingExpression | Not used. |
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| allCodes | if 'true': valueDomain.conceptCode = "@", valueDomain.includeChildren='true' |
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| isTaxonomicSet | No mapping available |
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| valueSetAuthority | Included in valueSetID |
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| valueSetNumber |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="732d615326892f1a-82ba3318-4e6b4173-9bc6ba97-89aa97310c8c23dbb358c740"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) |
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| ]]></ac:plain-text-body></ac:structured-macro> | |||
| includesOrExcludesSet | valueDomainEntry.includesValueDomain |
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| includeHeadCode | valueDomainEntry.isSelectable |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f21169d6e465934a-36cdc156-48a049e3-9c7eb0e1-423d04b8030effffb98e1f17"><ac:plain-text-body><![CDATA[ |
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| valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode | Assumes that there always is a head code. |
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| ]]></ac:plain-text-body></ac:structured-macro> | |||
VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4056285c3e3107c0-fe143d52-43cc4b76-bf03b2e3-67ff2141b401800b0c1bb794"><ac:plain-text-body><![CDATA[ |
| definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
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| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3939eb3dbc291530-6f0d58d4-43e4449c-96eca1b3-dcc37bed01543db18376f6f9"><ac:plain-text-body><![CDATA[ |
| appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
VCS_release_version | releaseId | codingSchemeVersion.version |
This is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
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| valueDomainVersion.version | Set iff one or more value sets change |
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| literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
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| releaseAgency |
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| releaseDate | codingSchemeVersion.versionDate |
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| valueDomainVersion.versionDate |
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| description | codingSchemeVersion.entityDescription |
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| valueDomainVersion.entityDescription |
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| editorID | There is no place for these currently. |
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| forWhomID |
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| |||||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) |
| This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
|
|
...
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| Source Definition |
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| Comments | ||
|
| Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d0a04c326c803f79-d3e39b91-48684e8f-a59cba8a-76b9d59d06730f61a6e328d7"><ac:plain-text-body><![CDATA[ | Line | 1 |
| <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | [<version>] | [<source>] | [<description>] | [<copyright>] | This must be the first line. It contains the coding scheme metadata. | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4792b5cfb5f8e702-59c39417-4a324437-9873b212-c140cfc51543f80227ed13d5"><ac:plain-text-body><![CDATA[ | 2 |
| [<code>] | <name> | [<description>] |
|
|
|
|
| Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> | |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1614b8e715a87f70-80db1e43-4d864151-9432b25b-200e5d54a0198de1ff5ef055"><ac:plain-text-body><![CDATA[ | 3 |
|
| [<code>] | <name> | [<description>] |
|
|
|
| Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
Text Element | LexGrid | Comments |
---|---|---|
Coding Scheme |
|
|
codingSchemeName | codingScheme.codingSchemeName |
|
codingSchemeId | codingScheme.codingSchemeId |
|
defaultLanguage | codingScheme.defaultLanguage |
|
formalName | codingScheme.formalName |
|
version | codingScheme.representsVersion | Optional |
source | codingScheme.source | Optional |
description | codingScheme.entityDescription | Optional |
copyright | codingScheme.copyright | Optional |
Concepts |
|
|
code | concept.conceptCode | Optional |
name | concept.conceptName |
|
description | concept.entityDescription |
|
...