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OBO Class

OBO Entity

LexGrid Model Element

Notes

Document Header

format-version

 

Not mapped.

Document Header

data-version

CodingScheme.representsVersion

Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED"

Document Header

version

CodingScheme.representsVersion

Deprecated - use data-version if present.

Document Header

date

 

Not mapped.

Document Header

saved-by

 

Ignored but included if contained in the remark entity.

Document Header

auto-generated-by

 

Ignored but included if contained in the remark entity.

Document Header

subsetdef

 

Not mapped.

Document Header

import

 

Deprecated - Imports are used to assemble a larger document from smaller.

Document Header

typeref

 

Deprecated.

Document Header

synonymtypedef

 

Not mapped.

Document Header

idspace

 

Not mapped.The idspace is a triple - localName, URN and description.

Document Header

default-relationship-id-prefix

 

Not mapped.

Document Header

id-mapping

CodingScheme.supportedAssociation

This is more generalized than the LexGrid model, as it supports mapping between *any* id's. Note that its primary purpose, however, is to handle supportedAssociation.

Document Header

remark

CodingScheme.entityDescription

Will combine multiple remark entities into the entityDescription.

Document Header

default-namespace

codingScheme.codingScheme

Will use default-namespace if provided; otherwise will use filename without the extension.

Document Header

default-namespace

codingScheme.formalName

Will use default-namespace if provided; otherwise will use filename without the extension.

Document Header

default-namespace

codingScheme.registeredName

Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension.

 

 

codingScheme.defaultLanguage

Hardcoded "en"

 

 

codingScheme.isNative

Hardcoded "true"

Stanza

id

CodedEntry.conceptCode

 

Stanza

name

CodedEntry.entityDescription

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0ebecb0c796c83b5-2d99c20a-4b064d5a-8ebf96f9-3bb74e960d04d7b81ae74d32"><ac:plain-text-body><![CDATA[

 

 

CodedEntry.presentation['textualPresentation'].text

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5378ac16e7c03f43-6cf14389-4c4443ac-ad899fbd-c806202b8c56fdd1c9191456"><ac:plain-text-body><![CDATA[

 

 

CodedEntry.presentation['textualPresentation'].isPreferred = true

 

]]></ac:plain-text-body></ac:structured-macro>

Stanza

alt_id

CodedEntry.property.property="alt_id"

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5f99831fc9fe5022-88e40316-464c45fe-bb23b5a6-896803a9ff5b3345a94be79c"><ac:plain-text-body><![CDATA[

 

 

CodedEntry.property['alt_id'].propertyId

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="53d4116a3f8f6d1f-b2cf3022-4be2456b-8e86a403-1999a67bfc5b51b3be0ea04b"><ac:plain-text-body><![CDATA[

 

 

CodedEntry.property['alt_id'].text

 

]]></ac:plain-text-body></ac:structured-macro>

Stanza

is_anonymous

CodedEntry.isAnonymous = true

 

Stanza

is_obsolete

CodedEntry.isActive = false

 

Stanza

def

CodedEntry.definition

 

 

 

CodedEntry.definition.isPreferred = true

 

Stanza

def.dbxref

 

See dbxref

Stanza

comment

CodedEntry.comment.text

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0f8d39ae494996d7-945e05be-48ef47d7-b8deb0dd-d7a5955f00a10345131d47e7"><ac:plain-text-body><![CDATA[

Stanza

subset

property[subset tag]

See subsetdef

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f345ce9dfcb873c0-8e78b570-4de84d9d-87c88550-296727ef98d51f2c883d9bb5"><ac:plain-text-body><![CDATA[

Stanza

syonym

presentation['textualPresentation'].text

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="37be5a542bbd859b-af9a3966-40e44413-b3e4883a-c46a747a7e0517f69f4f521f"><ac:plain-text-body><![CDATA[

Stanza

synonym.scope

presentation['textualPresentation'].degreeOfFidelity

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a7468056d7bf3a65-10add587-47624d1b-9be88df1-bfac0dfb7682a39e47350ec3"><ac:plain-text-body><![CDATA[

Stanza

synonym.type

presentation['textualPresentation'].representationalForm

 

]]></ac:plain-text-body></ac:structured-macro>

Stanza

synonym.dbxref

(see dbxref)

 

Stanza

exact_synonym

 

See synonym

Stanza

narrow_synonym

 

See synonym

Stanza

broad_synonym

 

See synonym

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1fbe1c883fd86cd5-eb973aec-48284730-82b8b6a1-e93b864883b1aeefce65c0c3"><ac:plain-text-body><![CDATA[

Stanza

xref

associations.['mapsTo']

 

]]></ac:plain-text-body></ac:structured-macro>

Stanza

xref_analog

 

See synonym

Stanza

xref_unk

 

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cf60e3be45f89c64-12010f2b-42cd42df-982ebbf9-44ab583086d9eaa974a5283c"><ac:plain-text-body><![CDATA[

Stanza

is_a

associations.['hasSubtype']

Reverse of the source and target.

]]></ac:plain-text-body></ac:structured-macro>

Stanza

is_a.namespace

 

If present, the supplied namespace becomes the owning "codingScheme".

Stanza

is_a.derived

associations.hasSubtype.associationQualifier

If present, need to include derived in the supportedAssociationQualifiers section

Stanza

intersection_of

 

Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets.

Stanza

union_of

 

Same as OWL

Stanza

disjoint_from

 

Same as OWL

Stanza

relationship

associations.

 

Stanza

relationship.not_necessary

associations..associationQualifier

 

Stanza

relationship.inverse_necessary

associations..associationQualifier

 

Stanza

relationship.namespace

 

If present, the supplied namespace becomes the owning "codingScheme".

Stanza

relationship.derived

associations..associationQualifier

 

Stanza

relationship.cardinality

associations..associationQualifier

 

Stanza

relationship.maxCardinality

associations..associationQualifier

 

Stanza

relationship.minCardinality

associations..associationQualifier

 

Stanza

is_obsolete

codedEntry.isActive = false

 

 

 

codedEntry.conceptStatus="is_obsolete"

 

Stanza

replaced_by

 

 

Stanza

consider

 

Not Mapped

Stanza

use_term

 

(deprecated)

dbxref

dbxref name

CodedEntry..source

 

 

 

supportedSource

dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc

dbxref

dbxref description

 

Not mapped.

dbxref

trailing modifiers

 

Not mapped.

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5116c7796a7273a1-746d3d54-43d54522-abeca40a-f3d1e7eecf870c97ee45cdaf"><ac:plain-text-body><![CDATA[

typeDef Stanza

domain

associations.['has_domain']

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="16a74c71c31e6aa6-2cb86177-47b64944-b9298fee-211aeffe7f0fc06f06da83e4"><ac:plain-text-body><![CDATA[

typeDef Stanza

range

associations.['has_range']

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="019378c0d5c6c3fa-dc23efe3-42834476-86e88228-88e9648f6d0c22a524e4c0f6"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_cyclic

property['is_cyclic']

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fe8f05681975f7aa-cde85f08-4c4248d6-b87093d9-4720d50f664976843754b0a4"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_reflexive

property['is_reflexive']

 

]]></ac:plain-text-body></ac:structured-macro>

 

 

association.isReflexive

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2d8e1484c171140e-8c3074e9-4bfc4e6d-a0c19a41-d023576be4f588eb79393078"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_symmetric

property['is_symmetric']

 

]]></ac:plain-text-body></ac:structured-macro>

 

 

association.isSymmetric

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dfad684b5a274b03-3ae5f02c-405f43f8-98ff8458-1f80290c04c872e685a710b0"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_transitive

property['is_transitive']

 

]]></ac:plain-text-body></ac:structured-macro>

 

 

association.isTransitive

 

typeDef Stanza

inverse_of

association.inverse

 

instance stanza

id

same rules as general stanza

same rules as general stanza

instance stanza

name

same rules as general stanza

same rules as general stanza

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a27e1cb73e25ea90-124f0a04-4a154601-a3e68c71-15d413fe0c954778c06d1c16"><ac:plain-text-body><![CDATA[

instance stanza

instance_of

association['has_instance']

 

]]></ac:plain-text-body></ac:structured-macro>

instance stanza

 

CodedEntry.property.property=""

data type properties go in Coded Entry property section

...

HL7 Table

HL7 Column

LexGrid Model Element

Notes

 

 

 

 

 

 

Intentionally Not mapped

Outstanding issues

Model

<modelID>

<codingSchemeName>

 



 

<name>

<formalName>

 



<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f4bf02c1c5a3fc70-ed41f4f8-4baf4e93-b4f98041-53f8084e1876d34419f59700"><ac:plain-text-body><![CDATA[

 

 

<registeredName>

[http://www.hl7.org/Library/data-model/RIM

http://www.hl7.org/Library/data-model/RIM] *[1]



]]></ac:plain-text-body></ac:structured-macro>

 

 

<defaultLanguage>

en*



 

<versionNumber>

<representsVersion>

 



 

 

<isNative>

0*



 

 

<approximateNumberofConcepts>

Result of count on concept bearing table?



 

 

<firstRelease>

MISSING

 

 

 

 

<modifiedRelease>

MISSING

 

 

 

 

<deprecated>

MISSING

 

 

 

<description>

<entityDescription>

 

 

 

 

 

<copyright>

MISSING

 

 

VCS_code_system

codeSystemId

codingScheme.registeredName

Moved to metadata file.

 

 

 

codeSystemType

commonTypes::Properties

This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file.

 

 

 

codeSystemName

concept.conceptCode

Moved to metadata file.

 

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="72c4d0994c952d01-8b12058c-486d412d-bafc9f55-37703d85cbb43c628751b2bd"><ac:plain-text-body><![CDATA[

 

codeSystemName

concept.presentation['textualPresentation'].text

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

 

fullName

codingScheme.formalName

 

 

 

 

description

codingScheme.entityDescription

Moved to metadata file.

 

 

 

releaseId

codingScheme.representsVersion

Moved to metadata file.

 

 

 

copyrightNotice

codingScheme.copyright

Moved to metadata file.

 

 

 

literal('en')

codingScheme.defaultLanguage

Moved to metadata file.

 

 

VCS_concept_code_xref

internalId

 

 

 

 

 

Concept Code

concept.conceptCode

 

RIM db column conceptCode2

 

 

Case Difference

commonTypes::Properties

Basically a proprty to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure)

RIM db column codeInstance

 

 

Status

concept.isActive=(conceptStatus=='A'?)

 

RIM db column conceptStatus

 

 

 

concept.conceptStatus

Not used by HL7. A = isActive, R = retired

 

 

VCS_concept_designation

internalId


foreign key

 

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f7c2a9f0474ff955-f0b9e6ea-4d7648b7-91e7867e-795daf2fbf08936ce4b597c6"><ac:plain-text-body><![CDATA[

 

designation

concept.presentation['textualPresentation'].text

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

 

designationSeq


 

 

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a1652eebb1473798-fe65fd18-469b4e6c-84fab576-ea73edb46aad92b83f649ece"><ac:plain-text-body><![CDATA[

 

language

concept.presentation['textualPresentation'].language

Can be omitted if language = default language

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="715dd6c9ddefba2f-d03ee03a-42594802-b58084fe-122c3d533aed6db863a2fb74"><ac:plain-text-body><![CDATA[

 

preferredForLanguage

concept.presentation['textualPresentation'].isPreferred

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="547c58d7af7621df-f85c6bf0-4e3547cf-acb19ed7-5e02d17acfb4a116b398d21d"><ac:plain-text-body><![CDATA[

VCS_concept_description

internalId

with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition

foreign key

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1cba573aafdc5c63-587a0d77-40404268-af2aa4de-0368325a7c41626a795f5bce"><ac:plain-text-body><![CDATA[

 

description

concept.presentation['textualPresentation'].text

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="58a97510e219b7d5-638fdeb9-4c364103-a7dd99a3-942c1aa4cf16371b928256b3"><ac:plain-text-body><![CDATA[

 

language

concept.presentation['textualPresentation'].language

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7f780fccaae9ab1d-4067f9b0-439242fc-b794bf04-fb709048524290638becc42e"><ac:plain-text-body><![CDATA[

 

literal('true')

concept.presentation['textualPresentation'].isPreferred

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f580f268b61e8f12-6d46010b-44f8412c-91368ed0-0e0caf16b6f2ea640af26e85"><ac:plain-text-body><![CDATA[

 

uniqueId()

concept.presentation['textualPresentation'].propertyId

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="96ffe8af6d55fb6e-eef9d549-418b4baa-b2bfb190-b837e96f0baa3d02b7016068"><ac:plain-text-body><![CDATA[

 

literal('definition')

concept.presentation['textualPresentation'].property

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

VCS_concept_property

internalId


foreign key

 

 

 

propertyCode

concept.property.property

 

 

 

 

propertySeq


Currently not used by HL7

 

 

 

propartyValue

concept.property.text

 

 

 

 

language

concept.property.language

 

 

 

VCS_concept_relationship

relationCode

association.association

 

 

 

 

sourceInternalId

associationInstance.sourceConcept

 

 

 

 

targetInternalId

associationTarget.targetConcept

 

 

 

Model

modelID

systemRelease.releaseId

 

 

 

 

name

service.service

 

 

 

 

versionNumber

service.version

 

 

 

 

lastModifiedDate

systemRelease.releaseDate

 

 

 

 

developingOrganization

systemRelease.releaseAgency

 

 

 

 

committeeID


 

 

 

 

description

systemRelease.entityDescription

 

 

 

 

concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)

systemRelease.releaseURN

 

 

 

 

literal('true')

systemRelease.isLatest

Also have to set the prior release isLatest to false

 

 

 

preceding-sibling/releaseOrder + 1

systemRelease.releaseOrder

 

 

 

Model

modelID

commonTypes::Properties

 

 

 

(Special mapping for NCI)

name

codingScheme.localName

 

 

 

 

versionNumber

codingScheme.representsVersion

 

 

 

 

lastModifiedDate

commonTypes::Properties

 

 

 

 

developingOrganization

commonTypes::Properties

 

 

 

 

committeeID


 

 

 

 

description

codingScheme.entityDescription

 

 

 

 

concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)

codingScheme.registeredName

 

 

 

 

literal('true')

commonTypes::Properties

Also have to set the prior release isLatest to false

 

 

 

preceding-sibling/releaseOrder + 1

commonTypes::Properties

 

 

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a6f3576df2925cc9-463cf6b4-4bce491b-84c8831d-d239ac3810a726bd7671a16c"><ac:plain-text-body><![CDATA[

RIM_vocabulary_domain

vocDomain

codingscheme["VocabularyDomain"].concept.conceptCode

Vocabulary Domains are carried in a code system of vocabulary domains.

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="983a342e98c2da6a-7b9ae09e-42964651-a3e6ac7b-64688d4236ed93976ff0bee7"><ac:plain-text-body><![CDATA[

 

 

codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text

preferredPresentation

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="05ce49dd6039b6f8-b7f25a17-4b8e4eec-af07ac64-a2c9b48577b1de29c5318ca1"><ac:plain-text-body><![CDATA[

 

description

codingscheme["VocabularyDomain"].concept.definition.text

preferredDefinition for code

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9861bdda3c8c5108-3d3c6120-47054299-807ea513-b9a4738378ccf01d8c9b5e8b"><ac:plain-text-body><![CDATA[

 

restrictsDomain

codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept

Should this be hasSubtype or something else?

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="204fb6499c6a7647-dc1a8978-47864347-8f7c9ca8-a8ec60c58630dd717b1f9914"><ac:plain-text-body><![CDATA[

 

 

codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="526c013207f5d168-8cae0eab-4c3a4838-853b8578-a61094523b37e3849c5c3e84"><ac:plain-text-body><![CDATA[

VOC_code_reference

usedToBuildValueSet

with(valueDomain[registeredName=current()/.])

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

 

referencesConceptCode

...valueDomainEntry/conceptCode

1) id is synthesized
2) Only stored if isHeadCode == false or includeReferencedCode == true

 

 

 

referencesInternalId


Internal id's aren't exposed in lexGrid

 

 

 

relationship

...valueDomainEntry/includeChildren = (relationship == 'hasSubtype')

Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any.

 

 

 

includeReferencedCode

...valueDomainEntry/isSelectable

 

Not in current implementation

 

 

leafOnly


Not used in HL7 Model

 

 

 

directChildrenOnly


Not used in HL7 Model

 

 

 

isHeadCode

 

Only used when referenced in VOC_value_set_constructor.

 

 

 

referencesCodeSystem

.../valueDomainEntry.codingScheme

Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem

 

 

 

arbitraryUniqueValue()

.../valueDomainEntry.id

 

 

 

VOC_registered_code_system

codeSystemId


VOC_registered_code_system isn't currently transferred to Lexgrid

 

 

 

sponsor


 

 

 

 

publisher


 

 

 

 

versionReportingMethod


 

 

 

 

licensingInformation


This field should really be transfer to copyright?

 

 

 

inUMLS


 

 

 

 

systemSpecificLocatorInfo


 

 

 

 

uri


 

 

 

 

isExternal


 

 

 

VOC_value_set

valueSetId

valueDomain.registeredName

 

 

 

 

valueSetName

valueDomain.valueDomain

Name is the key in LexGrid, and is optional in HL7 - will need to be addressed.

 

 

 

basedOnCodeSystem

valueDomain.defaultCodingScheme

Optional in HL7, required in LexGrid.

 

 

 

description

valueDomain.entityDescription

 

 

 

 

definingExpression


Not used.

 

 

 

allCodes

if 'true': valueDomain.conceptCode = "@", valueDomain.includeChildren='true'

 

 

 

 

isTaxonomicSet


No mapping available

 

 

 

valueSetAuthority


Included in valueSetID

 

 

 

valueSetNumber


 

 

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="732d615326892f1a-82ba3318-4e6b4173-9bc6ba97-89aa97310c8c23dbb358c740"><ac:plain-text-body><![CDATA[

VOC_value_set_constructor

usedToBuildValueSet

new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique())

 

 

 

]]></ac:plain-text-body></ac:structured-macro>

 

includesOrExcludesSet

valueDomainEntry.includesValueDomain

 

 

 

 

includeHeadCode

valueDomainEntry.isSelectable

 

 

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f21169d6e465934a-36cdc156-48a049e3-9c7eb0e1-423d04b8030effffb98e1f17"><ac:plain-text-body><![CDATA[

 

 

valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode

Assumes that there always is a head code.

 

 

]]></ac:plain-text-body></ac:structured-macro>

VOC_vocabulary_domain_value_set

representsVocDomain

(selector)

 

 

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4056285c3e3107c0-fe143d52-43cc4b76-bf03b2e3-67ff2141b401800b0c1bb794"><ac:plain-text-body><![CDATA[

 

definedByValueSet

codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text

have to get 'representsVocDomain' into supportedProperty header

 

 

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3939eb3dbc291530-6f0d58d4-43e4449c-96eca1b3-dcc37bed01543db18376f6f9"><ac:plain-text-body><![CDATA[

 

appliesInContext

codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext

Have to get all the contexts in the VocabularyDomain supportedContext header

 

 

]]></ac:plain-text-body></ac:structured-macro>

VCS_release_version

releaseId

codingSchemeVersion.version

Info
titleNote

This is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change.

 

 

 

 

valueDomainVersion.version

Set iff one or more value sets change

 

 

 

literal("false")

codingSchemeVersion.isComplete

All versions are delta's in this model

 

 

 

releaseAgency


 

 

 

 

releaseDate

codingSchemeVersion.versionDate

 

 

 

 

 

valueDomainVersion.versionDate

 

 

 

 

description

codingSchemeVersion.entityDescription

 

 

 

 

 

valueDomainVersion.entityDescription

 

 

 

 

editorID


There is no place for these currently.

 

 

 

forWhomID


 

 

 

concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)

 

This corresponds to the containing system release when the sytem release occurs. It is empty until then.

 

 

...

 

 

 

Source Definition

 

 

 

 

 

 

 

Comments

 

 

Column

1

2

3

4

5

6

7

8

 

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d0a04c326c803f79-d3e39b91-48684e8f-a59cba8a-76b9d59d06730f61a6e328d7"><ac:plain-text-body><![CDATA[

Line

1

 

<codingSchemeName>

<codingSchemeId>

<defaultLanguage>

<formalName>

[<version>]

[<source>]

[<description>]

[<copyright>]

This must be the first line. It contains the coding scheme metadata.

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4792b5cfb5f8e702-59c39417-4a324437-9873b212-c140cfc51543f80227ed13d5"><ac:plain-text-body><![CDATA[


2

 

[<code>]

<name>

[<description>]

 

 

 

 

 

Beginning of concepts in coding scheme.

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1614b8e715a87f70-80db1e43-4d864151-9432b25b-200e5d54a0198de1ff5ef055"><ac:plain-text-body><![CDATA[


3

 

 

[<code>]

<name>

[<description>]

 

 

 

 

Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name)

]]></ac:plain-text-body></ac:structured-macro>

Text Element

LexGrid

Comments

Coding Scheme

 

 

codingSchemeName

codingScheme.codingSchemeName

 

codingSchemeId

codingScheme.codingSchemeId

 

defaultLanguage

codingScheme.defaultLanguage

 

formalName

codingScheme.formalName

 

version

codingScheme.representsVersion

Optional

source

codingScheme.source

Optional

description

codingScheme.entityDescription

Optional

copyright

codingScheme.copyright

Optional  

Concepts

 

 

code

concept.conceptCode

Optional

name

concept.conceptName

 

description

concept.entityDescription

 

...