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Known Issues
The templates do not import correctly so there will be some broken (red) links on the concept pages.
Installation Process
The installation will take place in four separate steps.
- Use a bat file to extract the metadata about the concepts and write them as files into a directory.
- Run a php file to read the files and publish them to the Wiki.
- Edit the Main page to show the ontology hierarchy
- Import the templates into the Wiki
Setup and configuration
- Download and unzip the LexWikiPublisher 1.0 zip file.
- Open the lexWikiPublisher.prop file and enter the configuration information
The following are the configuration variables along with an example for each.
Required configuration information
logfile - location to store the published concepts
C:/Temp/publishbatch-local
...
configpath
...
-
...
the
...
path
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to
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the
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configuration
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file
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in
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the
...
LexEVS
...
installation
...
X:\\services\\lexevs\\resources\\config
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lbconfig.props
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csn
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-the
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code
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system
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name
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to
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be
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published
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NPO
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ccd
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-
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the
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concept
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code
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at
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the
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root
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of
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the
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hierarchy
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Entity
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wiki
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-
...
the
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name
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of
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the
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wiki
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LexWiki
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test
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template
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-
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SMW
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template
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name
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LexWiki
formname - the name of the semantic mediawiki form
LexWiki_NPO_Form
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Optional
...
configuration
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information
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republishexistingpages
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-
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Republish
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existing
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pages?
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yes
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propertiesonly
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-
...
If
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you
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want
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to
...
get
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properties
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and
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associations
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published
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only
...
no
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vsformname
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-
...
the
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name
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of
...
the
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semantic
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mediawiki
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form
...
for
...
value
...
sets
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user
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-
...
Wiki
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user
...
name
...
Wiki
...
user
...
name
...
pwd
...
-
...
Wiki
...
user
...
password
...
Wiki
...
user
...
password
...
self
...
-
...
is
...
the
...
selected
...
node
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to
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be
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published?
...
yes
...
batch
...
-
...
will
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all
...
the
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children
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of
...
the
...
selected
...
node
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be
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published?
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yes
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server
...
-
...
the
...
server
...
where
...
the
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wiki
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is
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located
...
informatics.mayo.edu
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port
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-
...
the
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port
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number
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where
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the
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wiki
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is
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setup
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8080
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batchsize
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-
...
number
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of
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concepts
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to
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process
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in
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each
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batch
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50
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namespace
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-
...
the
...
over
...
riding
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namespace
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to
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use
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for
...
pages
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LexWiki
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master
...
startPage - the starting page where index.php
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is
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the
...
default
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index.php
...
Extracting
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concepts
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from
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LexEVS
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- Be
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- sure
...
- the
...
- directory
...
- configured
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- for
...
- the
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- logfile
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- variable
...
- exists
...
- and
...
- is
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- write
...
- enabled.
...
- Run
...
- the
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- lexWikiPublisher
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- file
...
- useing
...
- the
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- bat
...
- file
...
- or
...
- shell
...
- script.
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Publishing
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to
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the
...
Wiki
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- Open
...
- a
...
- command
...
- prompt
...
- in
...
- the
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- lexwiki's
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- maintenance
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- directory
...
- Run
...
- the
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- publish
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- php
...
- using
...
- the
...
- directory
...
- location
...
- of
...
- the
...
- files
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- created
...
- during
...
- the
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- lexEVS
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- as
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- the
...
- only
...
- argument
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php
...
- publish.php
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- /home/myhomedir/tobepublishedpages
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Displaying
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the
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category
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tree
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- Log
...
- in
...
- to
...
- the
...
- Wiki
...
- and
...
- display
...
- the
...
- Main
...
- Page.
...
- Click
...
- on
...
- the
...
- Edit
...
- tab
...
- at
...
- the
...
- top
...
- of
...
- the
...
- page.
...
- Update
...
- the
...
- information
...
- between
...
- the
...
- cateegorytree
...
- tags
...
- to
...
- match
...
- your
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- onotology
...
- information
...
Category
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- BGT
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- Gene
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- Kind(B179)
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- not
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- found
...
 : : :BGT
...
- -
...
- the
...
- coding
...
- scheme
...
- name
...
 : : :Gene
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- Kind
...
- -
...
- the
...
- root
...
- node
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- for
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- the
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- Ontology
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(B179)
...
- -
...
- short
...
- name
...
- for
...
- the
...
- root
...
- node
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Category
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- NPO_Entity(Entity)
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- not
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- found
...
Importing
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the
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templates
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- From
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- the
...
- wiki,
...
- select
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- SpecialPages.
...
- On
...
- the
...
- SpecialPages,
...
- select
...
- import
...
- file.
...
- Import
...
- the
...
- templates
...
- which
...
- correspond
...
- to
...
- the
...
- ontology
...
- you
...
- created.
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