Page History
...
OWL Element | LexGrid | Comments | |
---|---|---|---|
OWL: RDF Schema Features | LexGrid | Comments | |
owl:ontology | codingScheme | No comments | |
xml:lang | codingScheme.defaultLanguage | Default is 'en' | |
dc:title | codingScheme.formalName | No comments | |
rdfs:label | codingScheme.localName | No comments | |
URI | codingScheme.registeredName | No comments | |
owl:versionInfo | codingScheme.representsVersion | Default is 'UNASSIGNED' | |
dc:rights | codingScheme.copyright | No comments | |
owl:Class (Thing, Nothing) | concept | No comments | |
rdf:ID | concept.conceptCode | No comments | |
rdf:ID | concept.isActive | Hard coded as "Active" | |
rdf:ID | concept.isAnonymous | No comments | |
rsfs:label | concept.entityDescription | No comments | |
rdf:comment | concept.comment | No comments | |
rdfs:subClassOf | association | No comments | |
rdfs:subClassOf | association.id = "subClassOf" | No comments | |
rdfs:subClassOf | association.forwardName = "subClassOf" | No comments | |
rdfs:subClassOf | association.isFunctional = "false" | No comments | |
rdfs:subClassOf | association.isNavigable = "true" | No comments | |
rdfs:subClassOf | association.isReflexive="true" | No comments | |
rdfs:subClassOf | association.isSymmetric="false" | No comments | |
rdfs:subClassOf | association.isTransitive="true" | No comments | |
rdf:Property (ObjectProperty) | association | An association between two classes (hasDomain, hasRange) | |
rdf:Property (DatatypeProperty) | association | An association between one class (domain) and one asscoication (hasDomain and hasDataProperty). The conceptProperty defines the range. | |
rdfs:subPropertyOf | association | No comments | No comments |
rdfs:subPropertyOf | association.id = "subPropertyOf" | No comments | |
rdfs:subPropertyOf | association.forwardName = "subPropertyOf" | No comments | |
rdfs:subPropertyOf | association.isFunctional = "false" | No comments | |
rdfs:subPropertyOf | association.isNavigable = "true" | No comments | |
rdfs:subPropertyOf | association.isReflexive="true" | No comments | |
rdfs:subPropertyOf | association.isSymmetric="false" | No comments | |
rdfs:subPropertyOf | association.isTransitive="true" | No comments | |
rdfs:domain | association | No comments | |
rdfs:domain | association.id = "hasDomain" | No comments | |
rdfs:domain | association.forwardName = "hasDomain" | No comments | |
rdfs:domain | association.isNavigable = "true" | No comments | |
rdfs:domain | association.isReflexive="true" | No comments | |
rdfs:domain | association.isSymmetric="false" | No comments | |
rdfs:domain | association.isTransitive="true" | No comments | |
rdfs:range | association | No comments | |
rdfs:range | association.id = "hasRange" | No comments | |
rdfs:range | association.forwardName = "hasRange" | No comments | |
rdfs:range | association.isNavigable = "true" | No comments | |
rdfs:range | association.isReflexive="false" | No comments | |
rdfs:range | association.isSymmetric="false" | No comments | |
rdfs:range | association.isTransitive="false" | No comments | |
Individual | association | A 'hasInstance' association is created. (ie. sourceId = Country, targetId = America) | |
Individual | association.id = "hasInstance" | No comments | |
OWL (In)Equality | LexGrid | Comment | |
owl:equivalentClass | association | No comments | |
owl:equivalentClass | association.id = "equivalentClass" | No comments | |
owl:equivalentClass | association.forwardName = "equivalentClass" | No comments | |
owl:equivalentClass | association.isFunctional = "false" | No comments | |
owl:equivalentClass | association.isNavigable = "true" | No comments | |
owl:equivalentClass | association.isReflexive="true" | No comments | |
owl:equivalentClass | association.isSymmetric="true" | No comments | |
owl:equivalentClass | association.isTransitive="true" | No comments | |
owl:equivalentClass | association.reverseName="equivalentClass" | No comments | |
owl:equivalentProperty | association | No comments | |
owl:equivalentProperty | association.id = "equivalentProperty" | No comments | |
owl:equivalentProperty | association.forwardName = "equivalentProperty" | No comments | |
owl:equivalentProperty | association.isFunctional = "false" | No comments | |
owl:equivalentProperty | association.isNavigable = "true" | No comments | |
owl:equivalentProperty | association.isReflexive="true" | No comments | |
owl:equivalentProperty | association.isSymmetric="true" | No comments | |
owl:equivalentProperty | association.isTransitive="true" | No comments | |
owl:equivalentProperty | association.reverseName="equivalentProperty" | No comments | |
owl:sameAs | association | No comments | |
owl:sameAs | association.id = "sameAs" | No comments | |
owl:sameAs | association.forwardName = "sameAs" | No comments | |
owl:sameAs | association.isFunctional = "false" | No comments | |
owl:sameAs | association.isNavigable = "true" | No comments | |
owl:sameAs | association.isReflexive="true" | No comments | |
owl:sameAs | association.isSymmetric="true" | No comments | |
owl:sameAs | association.isTransitive="true" | No comments | |
owl:sameAs | association.reverseName="sameAs" | No comments | |
differentFrom | association | No comments | |
differentFrom | association.id = "differentFrom" | No comments | |
differentFrom | association.forwardName = "differentFrom" | No comments | |
differentFrom | association.isFunctional = "false" | No comments | |
differentFrom | association.isNavigable = "true" | No comments | |
differentFrom | association.isReflexive="true" | No comments | |
differentFrom | association.isSymmetric="true" | No comments | |
differentFrom | association.isTransitive="true" | No comments | |
differentFrom | association.reverseName= "differentFrom" | No comments | |
owl:AllDifferent | association | No comments | |
owl:AllDifferent | association.id = "AllDifferent" | No comments | |
owl:AllDifferent | association.forwardName = "AllDifferent" | No comments | |
owl:AllDifferent | association.isFunctional = "false" | No comments | |
owl:AllDifferent | association.isNavigable = "true" | No comments | |
owl:AllDifferent | association.isReflexive="true" | No comments | |
owl:AllDifferent | association.isSymmetric="true" | No comments | |
owl:AllDifferent | association.isTransitive="true" | No comments | |
owl:AllDifferent | association.reverseName= "AllDifferent" | No comments | |
OWL: Property Characteristics | LexGrid | Comments | |
owl:inverseOf | association | No comments | |
owl:inverseOf | association.id = "inverseOf" | No comments | |
owl:inverseOf | association.forwardName = "inverseOf" | No comments | |
owl:inverseOf | association.isFunctional = "false" | No comments | |
owl:inverseOf | association.isNavigable = "true" | No comments | |
owl:inverseOf | association.isReflexive="true" | No comments | |
owl:inverseOf | association.isSymmetric="true" | No comments | |
owl:inverseOf | association.isTransitive="true" | No comments | |
owl:inverseOf | association.reverseName="inverseOf" | No comments | |
owl:TransitiveProperty | association.isTransitive | association property 'isTransitive' | |
owl:SymmetricProperty | association.isSymmetric | association property 'isSymmetric' | |
owl:InverseFunctionalProperty | association.isReverseFunctional | association property 'isReverseFunctional' | |
owl:FunctionalProperty | association.isFunctional | association property 'isFunctional' | |
OWL: Property Restrictions | LexGrid | Comments | |
owl:Restriction | concept | Create an anonymous concept for the restriction | |
owl:Restriction | concept.id | System generated | |
owl:Restriction | concept.isActive = true | ||
owl:Restriction | concept.isAnonymous = true | Hardcoded "True" | |
owl:onProperty | association.id | – | |
owl: allValuesFrom | concept.entityDescription | String of allValuesFrom values | |
owl: allValuesFrom | concept.presentation.propertyId | Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value. | |
owl: allValuesFrom | concept.presentation.propertyName | Hardcoded "textualPresentation" | |
owl: allValuesFrom | concept.presentation.isPreferred = true | Hardcoded "true" | |
owl: allValuesFrom | concept.presentation.text | String of allValuesFrom values | |
owl: allValuesFrom | concept.conceptProperty.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |
owl: allValuesFrom | concept.conceptProperty.propertyName = type | Hardcoded "type" | |
owl: allValuesFrom | concept.conceptProperty.text = "owl:unionOf" | ||
owl: someValuesFrom | concept.entityDescription | String of someValuesFrom values | |
owl: someValuesFrom | concept.presentation.propertyId | Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value. | |
owl: someValuesFrom | concept.presentation.propertyName | Hardcoded "textualPresentation" | |
owl: someValuesFrom | concept.presentation.isPreferred = true | Hardcoded "true" | |
owl: someValuesFrom | concept.presentation.text | String of someValuesFrom values | |
owl: someValuesFrom | concept.conceptProperty.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |
owl: someValuesFrom | concept.conceptProperty.propertyName = type | Hardcoded "type" | |
owl: someValuesFrom | concept.conceptProperty.text = "owl:intersectionOf" | ||
owl:intersectionOf | concept.entityDescription | String of intersectionOf values (ie. Pizza and not VegetarianPizza) | |
owl:intersectionOf | concept.presentation.propertyId | Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value. | |
owl:intersectionOf | concept.presentation.propertyName | Hardcoded "textualPresentation" | |
owl:intersectionOf | concept.presentation.isPreferred = true | Hardcoded "true" | |
owl:intersectionOf | concept.presentation.text | String of intersectionOf values (ie. Pizza and not VegetarianPizza) | |
owl:intersectionOf | concept.conceptProperty.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |
owl:intersectionOf | concept.conceptProperty.propertyName = type | Hardcoded "type" | |
owl:intersectionOf | concept.conceptProperty.text = "owl:intersectionOf" | ||
UnionOf | concept.conceptProperty.text = "owl:unionOf" | – | |
owl:complementOf | association | association.id = "subClassOf" | |
owl:oneOf | concept.entityDescription | String of oneOf values | |
owl:oneOf | concept.presentation.propertyId | Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value. | |
owl:oneOf | concept.presentation.propertyName | Hardcoded "textualPresentation" | |
owl:oneOf | concept.presentation.isPreferred = true | Hardcoded "true" | |
owl:oneOf | concept.presentation.text | String of oneOf values | |
owl:oneOf | concept.conceptProperty.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |
owl:oneOf | concept.conceptProperty.propertyName = type | Hardcoded "type" | |
owl:oneOf | concept.conceptProperty.text = "owl:intersectionOf" | – | |
owl:hasValue | associationQualification.nameAndValueList.content | – | |
owl:minCardinality | concept.entityDescription | String of minCardinality Values (ie. (hasTopping min 3) and Pizza) | |
owl:minCardinality | concept.presentation.propertyId | Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value. | |
owl:minCardinality | concept.presentation.propertyName | Hardcoded "textualPresentation" | |
owl:minCardinality | concept.presentation.isPreferred = true | Hardcoded "true" | |
owl:minCardinality | concept.presentation.text | String of minCardinality Value (ie. (hasTopping min 3) and Pizza) | |
owl:minCardinality | concept.conceptProperty.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |
owl:minCardinality | concept.conceptProperty.propertyName = type | Hardcoded "type" | |
owl:minCardinality | concept.conceptProperty.text = "owl:intersectionOf" | – | |
owl:maxCardinality | concept.entityDescription | String of maxCardinality Values (ie. (hasTopping max 2) and Pizza) | |
owl:maxCardinality | concept.presentation.propertyId | Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value. | |
owl:maxCardinality | concept.presentation.propertyName | Hardcoded "textualPresentation" | |
owl:maxCardinality | concept.presentation.isPreferred = true | Hardcoded "true" | |
owl:maxCardinality | concept.presentation.text | String of maxCardinality Values (ie. (hasTopping max 2) and Pizza) | |
owl:maxCardinality | concept.conceptProperty.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |
owl:maxCardinality | concept.conceptProperty.propertyName = type | Hardcoded "type" | |
owl:maxCardinality | concept.conceptProperty.text = "owl:intersectionOf" | ||
owl:cardinality | concept.entityDescription | String of cardinality Values | |
owl:cardinality | concept.presentation.propertyId | Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value. | |
owl:cardinality | concept.presentation.propertyName | Hardcoded "textualPresentation" | |
owl:cardinality | concept.presentation.isPreferred = true | Hardcoded "true" | |
owl:cardinality | concept.presentation.text | String of cardinality Values | |
owl:cardinality | concept.conceptProperty.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |
owl:cardinality | concept.conceptProperty.propertyName = type | Hardcoded "type" | |
owl:cardinality | concept.conceptProperty.text = "owl:intersectionOf" | No comments | |
owl:disjointWith | association | association.id = "disjointWith" | |
OWL: Annotation Property | LexGrid | Comments | |
rdfs:label | Presentation | No comments | |
rdfs:label | concept.presentation.propertyId | Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value. | |
rdfs:label | concept.presentation.propertyName = "textualPresentation" | Hardcoded "textualPresentation" | |
rdfs:label | concept.presentation.isPreferred = true | Hardcoded "true" | |
rdfs:label | concept.presentation.text | Value of rdfs:label | |
rdfs:comment | Comment | No comments | |
rdfs:comment | concept.comment.propertyId | Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value. | |
rdfs:comment | concept.comment.propertyName = "comment" | Hardcoded "comment" | |
rdfs:comment | concept.presentation.text | Value of rdfs:comment | |
rdfs:seeAlso | conceptProperty | No comments | |
rdfs:isDefinedBy | conceptProperty | No comments | |
OWL: Versioning | LexGrid | Comments | |
owl:versionInfo | codingScheme.representsVersion | No comments | |
priorVersion | Not Mapped | No comments | |
backwardCompatibleWith | Not Mapped | No comments | |
owl:incompatibleWith | association | No comments | |
owl:incompatibleWith | association.id = "incompatibleWith" | No comments | |
owl:incompatibleWith | association.forwardName = "incompatibleWith" | No comments | |
owl:incompatibleWith | association.isFunctional = "false" | No comments | |
owl:incompatibleWith | association.isNavigable = "true" | No comments | |
owl:incompatibleWith | association.isReflexive="true" | No comments | |
owl:incompatibleWith | association.isSymmetric="true" | No comments | |
owl:incompatibleWith | association.isTransitive="true" | No comments | |
owl:incompatibleWith | association.reverseName="incompatibleWith" | No comments | |
DeprecatedClass | Concept attribute setIsActive = false | Not Mapped | |
DeprecatedProperty | — | Not Mapped |
...
OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
---|---|---|---|---|---|
Document Header | format-version |
| Not mapped. | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date |
| Not mapped. | ||
Document Header | saved-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef |
| Not mapped. | ||
Document Header | import |
| Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref |
| Deprecated. | ||
Document Header | synonymtypedef |
| Not mapped. | ||
Document Header | idspace |
| Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix |
| Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between any id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
|
| codingScheme.defaultLanguage | Hardcoded "en" | ||
|
| codingScheme.isNative | Hardcoded "true" | ||
Stanza | id | CodedEntry.conceptCode |
| ||
Stanza | name | CodedEntry.entityDescription |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="60f431f38815bc92-43b568bc-40d14071-bb25ba72-b0f80cc78148492bf5d94716"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="47a1dd1f40538b7d-722a7d99-4cd34715-ad87ab42-b9c06cde72999df2e649684e"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].isPreferred = true |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1f2b7b97505ed014-2788ab37-4a184eb3-9496a125-345bb0865fce8d4f5be226d8"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].propertyId |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="88071a8c3514eebe-958deb71-47a641e9-b607ac57-387062831cbaf73f7bee20ae"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true |
| ||
Stanza | is_obsolete | CodedEntry.isActive = false |
| ||
Stanza | def | CodedEntry.definition |
| ||
|
| CodedEntry.definition.isPreferred = true |
| ||
Stanza | def.dbxref |
| See dbxref | ||
Stanza | comment | CodedEntry.comment.text |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="49a862b1f0eed72a-7d8ef91a-4806463d-854193b4-c8533ed197a65112b37d721a"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0ba50bf15f6dbd75-94a99436-4c6343ae-91daad87-d01d320f82b74af5856d9920"><ac:plain-text-body><![CDATA[ | Stanza | synonym | presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="55178b9ec9e51da1-f3ab7dd7-4d994998-866ba4a9-683ccb31297d9d246f353745"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4e27a077fb2b6f16-30daa5ff-449e425a-bc85b75a-9929105dab37322ab3f2603d"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref |
| (see dbxref) | ||
Stanza | exact_synonym |
| See synonym | ||
Stanza | narrow_synonym |
| See synonym | ||
Stanza | broad_synonym |
| See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="73293108216603d3-2945cf17-4c7a4988-9526abe0-ca05921f31b5449431b104d5"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog |
| See synonym | ||
Stanza | xref_unk |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="79fc868287d5b427-c7b44705-470d44f0-ac179f23-1569364a1accf8260017e8c2"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of |
| Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of |
| Same as OWL | ||
Stanza | disjoint_from |
| Same as OWL | ||
Stanza | relationship | associations. |
| ||
Stanza | relationship.not_necessary | associations..associationQualifier |
| ||
Stanza | relationship.inverse_necessary | associations..associationQualifier |
| ||
Stanza | relationship.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier |
| ||
Stanza | relationship.cardinality | associations..associationQualifier |
| ||
Stanza | relationship.maxCardinality | associations..associationQualifier |
| ||
Stanza | relationship.minCardinality | associations..associationQualifier |
| ||
Stanza | is_obsolete | codedEntry.isActive = false |
| ||
Stanza | replaced_by |
|
| ||
Stanza | consider |
| Not Mapped | ||
Stanza | use_term |
| (deprecated) | ||
dbxref | dbxref name | CodedEntry..source |
| ||
| supportedSource |
| dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description |
| Not mapped. | ||
dbxref | trailing modifiers |
| Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="19ea05df010fe582-2b6f7f71-42394775-82df8f18-d3e47b05cbef8b2f64a575fc"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3c686f9b57309016-b8bce813-49cd48ff-aaa8b525-b526f0bcc431f95dcf76a069"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1c08ee0bd753ac8e-f0a9aeb0-41764d2c-b02bb261-c4b93b7d1fa5868538a49d0a"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2ce8f0931d75ae35-890fe53c-4874476a-885db2b5-cadeaa15bc10438289116e1a"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isReflexive |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a11ad8e521abed2e-8dedb6cd-4aae46e0-90c6ac79-86ac2648ae8c787204515ce5"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isSymmetric |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="11f05701741cbcfa-ba33629b-470d4d41-b1b58951-3fad4ff34c8f8b6e5d0584a0"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isTransitive |
| ||
typeDef Stanza | inverse_of | association.inverse |
| ||
instance stanza | id | same rules as general stanza | same rules as general stanza | ||
instance stanza | name | same rules as general stanza | same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b151a01d29067a42-ae426b55-433e4ed8-95a48407-77ea6837045dfee0065c7514"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza |
| CodedEntry.property.property="" | data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes | Intentionally Not mapped | Outstanding issues | ||
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Model | <modelID> | <codingSchemeName> |
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| <name> | <formalName> |
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| <registeredName> |
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| <defaultLanguage> | en* |
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|
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| <versionNumber> | <representsVersion> |
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|
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| <isNative> | 0* |
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| <approximateNumberofConcepts> | Result of count on concept bearing table? |
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| <firstRelease> | MISSING |
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| <modifiedRelease> | MISSING |
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| <deprecated> | MISSING |
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| <description> | <entityDescription> |
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| <copyright> | MISSING |
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VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
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| codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
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| codeSystemName | concept.conceptCode | Moved to metadata file. |
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| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d8fc4825bd004e24-a257b825-41b34849-8b0d84e4-e747140a01ba51c8ce0183c7"><ac:plain-text-body><![CDATA[ |
| codeSystemName | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
| fullName | codingScheme.formalName |
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| description | codingScheme.entityDescription | Moved to metadata file. |
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| releaseId | codingScheme.representsVersion | Moved to metadata file. |
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| copyrightNotice | codingScheme.copyright | Moved to metadata file. |
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| literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
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VCS_concept_code_xref | internalId |
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| Concept Code | concept.conceptCode |
| RIM db column conceptCode2 |
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| Case Difference | commonTypes::Properties | Basically a property to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| ||
| Status | concept.isActive=(conceptStatus=='A'?) |
| RIM db column conceptStatus |
| ||
|
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
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VCS_concept_designation | internalId |
| foreign key |
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| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9106f581421cbe9a-219c9446-49414dc7-b681b752-d9ccd30686cef397111881b9"><ac:plain-text-body><![CDATA[ |
| designation | concept.presentation['textualPresentation'].text |
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|
| ]]></ac:plain-text-body></ac:structured-macro> |
| designationSeq |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d897294607b532e0-f48266a3-41354ed1-bdd7b53a-bc463c7c9bb82e3cfadedc0a"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b08941db138735f7-01c7655e-426f449c-9834b66b-4d9270a1087618e08f84e810"><ac:plain-text-body><![CDATA[ |
| preferredForLanguage | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="50951e2de0076ca6-6a288009-4947479b-af7ba00b-b2ea2cd6f642283217b8adda"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
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| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f81a1f43b38731f3-164a172e-48c448d8-85509627-69526035c26939874a90eeb4"><ac:plain-text-body><![CDATA[ |
| description | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f73fe9dd825d442e-f4e61235-4d104056-8cd38e7a-be5a297dbb075f67ce7e8c26"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d294b90ab54dc6b5-9f2bcf2c-4b0b432b-b23186da-ec637cee1053b6c0c7206bdb"><ac:plain-text-body><![CDATA[ |
| literal('true') | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="acf8cb9a96853f08-fdd797ab-45644561-bb0d82e0-2a91b645b535feeb78742338"><ac:plain-text-body><![CDATA[ |
| uniqueId() | concept.presentation['textualPresentation'].propertyId |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a3adce96f383f0f8-88416faa-43ea41a4-93f1a4ea-4e15075c4de7e9dfdb1685b4"><ac:plain-text-body><![CDATA[ |
| literal('definition') | concept.presentation['textualPresentation'].property |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_concept_property | internalId |
| foreign key |
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| propertyCode | concept.property.property |
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| propertySeq |
| Currently not used by HL7 |
|
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| propertyValue | concept.property.text |
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| language | concept.property.language |
|
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VCS_concept_relationship | relationCode | association.association |
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| sourceInternalId | associationInstance.sourceConcept |
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|
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| targetInternalId | associationTarget.targetConcept |
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Model | modelID | systemRelease.releaseId |
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| name | service.service |
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| versionNumber | service.version |
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| lastModifiedDate | systemRelease.releaseDate |
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| developingOrganization | systemRelease.releaseAgency |
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| committeeID |
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| description | systemRelease.entityDescription |
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| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN |
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| literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
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| preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder |
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Model | modelID | commonTypes::Properties |
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(Special mapping for NCI) | name | codingScheme.localName |
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| versionNumber | codingScheme.representsVersion |
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| lastModifiedDate | commonTypes::Properties |
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| developingOrganization | commonTypes::Properties |
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| committeeID |
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| description | codingScheme.entityDescription |
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| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName |
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| literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
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| preceding-sibling/releaseOrder + 1 | commonTypes::Properties |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="013c6b20a4a6223c-e645fd5e-4eb6486b-9422a6e5-6ad0b621635a7d553071c584"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
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| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e39447f7ef9bf4ef-520bca6a-470c49ce-a51bbd93-df0434c8c92c2ac74d66366f"><ac:plain-text-body><![CDATA[ |
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| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
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| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="45b1421d6c9b74e2-8477af3b-4a554e6b-9dab8699-f7bc4730a538c49211871682"><ac:plain-text-body><![CDATA[ |
| description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="614262e9d3d5cd29-753c47be-485e406f-bbfa9520-a7733c7b0883dfbdad6ac248"><ac:plain-text-body><![CDATA[ |
| restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3992a4e980a4bb82-c50f583a-44b34575-8583ae01-dd6023941f1ef313d03276d9"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="20415249d5348e2c-08e119d8-475440dd-a9789902-c7d3fbf5c221b51975d4199c"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) |
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| ]]></ac:plain-text-body></ac:structured-macro> |
| referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
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| referencesInternalId |
| Internal id's aren't exposed in lexGrid |
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| relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
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| includeReferencedCode | ...valueDomainEntry/isSelectable |
| Not in current implementation |
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| leafOnly |
| Not used in HL7 Model |
|
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| directChildrenOnly |
| Not used in HL7 Model |
|
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| isHeadCode |
| Only used when referenced in VOC_value_set_constructor. |
|
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| referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
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| arbitraryUniqueValue() | .../valueDomainEntry.id |
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VOC_registered_code_system | codeSystemId |
| VOC_registered_code_system isn't currently transferred to Lexgrid |
|
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| sponsor |
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| publisher |
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| versionReportingMethod |
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| licensingInformation |
| This field should really be transfer to copyright? |
|
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| inUMLS |
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| systemSpecificLocatorInfo |
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| uri |
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| isExternal |
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VOC_value_set | valueSetId | valueDomain.registeredName |
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| valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
|
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| basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
|
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| description | valueDomain.entityDescription |
|
|
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| definingExpression |
| Not used. |
|
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| allCodes |
|
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|
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| isTaxonomicSet |
| No mapping available |
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| valueSetAuthority |
| Included in valueSetID |
|
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| valueSetNumber |
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|
|
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cb6a59742406daa1-9e08bd30-43bf4cdd-bd32b791-704c93ee535bec358785ee39"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) |
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| ]]></ac:plain-text-body></ac:structured-macro> |
| includesOrExcludesSet | valueDomainEntry.includesValueDomain |
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| includeHeadCode | valueDomainEntry.isSelectable |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ad1056d37e154184-3d3f798d-41ea4873-8d31a00f-ce87d834697483e7d4162ee1"><ac:plain-text-body><![CDATA[ |
|
| valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode | Assumes that there always is a head code. |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5be7cc7163f63002-332dd07e-49164da6-b173aa29-60827febe9ec912b58e3cb9c"><ac:plain-text-body><![CDATA[ |
| definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="47e564338c09b2dc-3dcc7702-4a8745de-9f758a72-1f82186d0a798e72dc605ccf"><ac:plain-text-body><![CDATA[ |
| appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_release_version | releaseId | codingSchemeVersion.version | Note: this is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
|
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|
| valueDomainVersion.version | Set iff one or more value sets change |
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| literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
|
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| releaseAgency |
|
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| releaseDate | codingSchemeVersion.versionDate |
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| valueDomainVersion.versionDate |
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| description | codingSchemeVersion.entityDescription |
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|
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| valueDomainVersion.entityDescription |
|
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| editorID |
| There is no place for these currently. |
|
| ||
| forWhomID |
| There is no place for these currently. |
|
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| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) |
| This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
|
|
...
Source Definition |
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| Comments | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
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Line | 1 |
| <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | version |
| description | copyright | This must be the first line. It contains the coding scheme metadata. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9e3fd2e21f2ace0c-e1c2e013-44bf47a5-8252b577-1b2613d54c70162e8ac05272"><ac:plain-text-body><![CDATA[ |
| 2 |
| [<code>] | <name> | description |
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| Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="233e92fe3b951160-7dff5ada-4a274f74-96d69904-1e0b228be3edd276bcbd49fd"><ac:plain-text-body><![CDATA[ |
| 3 |
| [<code>] | <name> | description |
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| Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
...