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OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
---|---|---|---|---|---|
Document Header | format-version | — | Not mapped | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date | — | Not mapped | ||
Document Header | saved-by | — | Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by | — | Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef | — | Not mapped. | ||
Document Header | import | — | Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref | — | Deprecated. | ||
Document Header | synonymtypedef | — | Not mapped. | ||
Document Header | idspace | — | Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix | — | Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between any id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
HeaderDocument | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
HeaderDocument | default-namespace | codingScheme.defaultLanguage | Hard coded "en" | ||
HeaderDocument | default-namespace | codingScheme.isNative | Hard coded "true" | ||
Stanza | id | CodedEntry.conceptCode | No notes | ||
Stanza | name | CodedEntry.entityDescription | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a3de59c99d0aa08c-32b343c0-48e7431b-9c41ae97-0c9895f3e4c608e9a6157923"><ac:plain-text-body><![CDATA[ | Stanza | name | CodedEntry.presentation['textualPresentation'].text | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5b56a9ba5ec62e56-523b766c-4cb84291-95ad8d91-b3bfed9e937fd960787fa568"><ac:plain-text-body><![CDATA[ | Stanza | name | CodedEntry.presentation['textualPresentation'].isPreferred = true | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id | None | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="da0b7318a3a8fb8b-1994aabe-49bf48eb-91db9a63-9542c6dc40300ccf8a276c9d"><ac:plain-text-body><![CDATA[ | Stanza | alt_id | CodedEntry.property['alt_id'].propertyId | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="17901e9e182ab1e8-376f75b6-4c884cc8-8b94b83f-210ec7bc281b55af67f96adc"><ac:plain-text-body><![CDATA[ | Stanza | alt_id | CodedEntry.property['alt_id'].text | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true | No notes | ||
Stanza | is_obsolete | CodedEntry.isActive = false | No notes | ||
Stanza | def | CodedEntry.definition | No notes | ||
Stanza | def | CodedEntry.definition.isPreferred = true | No notes | ||
Stanza | def.dbxref | — | See dbxref | ||
Stanza | comment | CodedEntry.comment.text | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1b75994576de16b9-92796a93-4a444c15-9fcab401-545ef9f7bfbf69e9f6556878"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d8920b9783f16481-b8352910-40dc47bc-a4afb198-6c2927bf2ae3e3bc0893803b"><ac:plain-text-body><![CDATA[ | Stanza | synonym | presentation['textualPresentation'].text | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8ddcb048da59a4a7-1946b249-494b4575-a326ad07-1068f581eea9b16dbd056c41"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="592934a71548970e-7bd0beb1-41c74ff4-a68395e9-2d4b4a5b600b000424340f62"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref | --- — | See dbxref | ||
Stanza | exact_synonym | — | See synonym | ||
Stanza | narrow_synonym | — | See synonym | ||
Stanza | broad_synonym | — | See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ada5efec417b34b8-6e3afd2e-4f68449d-8c98a093-6b9a24441dea9b44bd380117"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog | — | See synonym | ||
Stanza | xref_unk | None | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="59e916154bc7e037-05ba9fee-40a34932-9c608a0c-74812a168a52c1d65602efb5"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace | None | If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of | None | Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of | — | Same as OWL | ||
Stanza | disjoint_from | — | Same as OWL | ||
Stanza | relationship | associations. | No notes | ||
Stanza | relationship.not_necessary | associations..associationQualifier | No notes | ||
Stanza | relationship.inverse_necessary | associations..associationQualifier | No notes | ||
Stanza | relationship.namespace | None | If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier | No notes | ||
Stanza | relationship.cardinality | associations..associationQualifier | No notes | ||
Stanza | relationship.maxCardinality | associations..associationQualifier | No notes | ||
Stanza | relationship.minCardinality | associations..associationQualifier | No notes | ||
Stanza | is_obsolete | codedEntry.isActive = false | No notes | ||
Stanza | replaced_by | None | No notes | ||
Stanza | consider | — | Not mapped | ||
Stanza | use_term | — | Deprecated | ||
dbxref | dbxref name | CodedEntry..source | No notes | ||
dbxref | supportedSource | None | dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description | — | Not mapped. | ||
dbxref | trailing modifiers | — | Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e1189d22d4de03e4-5652ade4-4e764205-a524a575-794a2132a719ce3916d680a4"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="918093cc8acf6536-73ad970a-4b5c49ee-bcf6b357-ad7d5e54ad74bf4387a04731"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f478a30d29179aca-755d8382-45c54b30-b30f9948-023e88507bffb4528e7934c0"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ba75fbecbba12684-cf88aa61-47074f6f-9f8faccc-5e796325faf61dfa8e79decd"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
typeDef Stanza | is_reflexive |
| | association.isReflexive | No notes |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dcd43652be58d872-1b1de58f-4b054a27-b9788f11-63edc7cbf8df6babab15ba28"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
typeDef Stanza | is_symmetric |
| | association.isSymmetric | No notes |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="01bfacd0c4cd7ab3-d97abea8-4e9a45c2-91f8bab0-75e708d483b20e3d6e2b911a"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
typeDef Stanza | is_transitive |
| | association.isTransitive | No notes |
typeDef Stanza | inverse_of | association.inverse | No notes | ||
instance stanza | id | same rules as general stanza | Same rules as general stanza | ||
instance stanza | name | same rules as general stanza | Same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="acd663bed53d6717-389be7b5-422d4938-b07ab356-d14f1b8fc4bf27f45655ced0"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza | instance_of | CodedEntry.property.property="" | Data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes | Intentionally Not mapped | Outstanding issues | ||
---|---|---|---|---|---|---|---|
Model | <modelID> | <codingSchemeName> | No notes |
|
| ||
Model | <name> | <formalName> | No notes |
|
| ||
Model | <registeredName> |
| No notes |
|
| ||
Model | <defaultLanguage> | en* | No notes |
|
| ||
Model | <versionNumber> | <representsVersion> | No notes |
|
| ||
Model | <isNative> | 0* | No notes |
|
| ||
Model | <approximateNumberofConcepts> | Result of count on concept bearing table? | No notes |
|
| ||
Model | <firstRelease> | MISSING | No notes |
|
| ||
Model | <modifiedRelease> | MISSING | No notes |
|
| ||
Model | <deprecated> | MISSING | No notes |
|
| ||
Model | <description> | <entityDescription> | No notes |
|
| ||
Model | <copyright> | MISSING | No notes |
|
| ||
VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
|
| ||
VCS_code_system | codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
|
| ||
VCS_code_system | codeSystemName | concept.conceptCode | Moved to metadata file. |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="238a9e0c03152636-65823104-4be9486d-95ee9d76-d4b5c3a6041b4715a4ff49c9"><ac:plain-text-body><![CDATA[ | VCS_code_system | codeSystemName | concept.presentation['textualPresentation'].text | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_code_system | fullName | codingScheme.formalName | No notes |
|
| ||
VCS_code_system |
| description | codingScheme.entityDescription | Moved to metadata file. |
|
| |
VCS_code_system | releaseId | codingScheme.representsVersion | Moved to metadata file. |
|
| ||
VCS_code_system | copyrightNotice | codingScheme.copyright | Moved to metadata file. |
|
| ||
VCS_code_system | literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
|
| ||
VCS_concept_code_xref | internalId | None | No notes |
|
| ||
VCS_concept_code_xref | Concept Code | concept.conceptCode | No notes | RIM db column conceptCode2 |
| ||
VCS_concept_code_xref | Case Difference | commonTypes::Properties | Basically a property to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| ||
VCS_concept_code_xref | Status | concept.isActive=(conceptStatus=='A'?) | No notes | RIM db column conceptStatus |
| ||
VCS_concept_code_xref |
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
|
| ||
VCS_concept_designation | internalId |
| foreign key |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1671bdfb05dd592c-9eb75a45-42ef4f10-b908ad4d-6def4b8c9b4e5ad41451c09f"><ac:plain-text-body><![CDATA[ | VCS_concept_designation | designation | concept.presentation['textualPresentation'].text | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_concept_designation | designationSeq |
| No notes |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b3068ad600cac9c2-9a92e11c-493f47c4-a66dbcb0-1d7350f54206740ddb96d887"><ac:plain-text-body><![CDATA[ | VCS_concept_designation | language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="94548f99ae11239c-760635f2-47e4488f-ac0ab5e1-5913722c8d9b27f2c8e99bdf"><ac:plain-text-body><![CDATA[ | VCS_concept_designation | preferredForLanguage | concept.presentation['textualPresentation'].isPreferred | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d4d0dd4d69dec188-e13c65ea-48c74149-b2a38c78-1e2ca09c16823298d3006b13"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5924ebe07faeed79-e7f959dd-4e2d423d-833fa48c-47d4f55c09be543f10d2b0fa"><ac:plain-text-body><![CDATA[ | VCS_concept_description | description | concept.presentation['textualPresentation'].text | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3d8717a0bfd4a3ca-3f45c333-437c4de1-961b9f1c-97b96f733c4ef1e92b5e670d"><ac:plain-text-body><![CDATA[ | VCS_concept_description | language | concept.presentation['textualPresentation'].language | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="faa3681dae51ac7d-0577c4c4-43214215-a9919a9b-7f132f76ee01f8bad8172bb3"><ac:plain-text-body><![CDATA[ | VCS_concept_description | literal('true') | concept.presentation['textualPresentation'].isPreferred | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1846960c375f8301-d5613439-43644717-9932a80c-e2f41dbe2364ed4186384563"><ac:plain-text-body><![CDATA[ | VCS_concept_description | uniqueId() | concept.presentation['textualPresentation'].propertyId | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5edf22942e9c215e-93689b46-4b59492a-a4cf8473-ff6f7fe255ff782db31d72d3"><ac:plain-text-body><![CDATA[ | VCS_concept_description | literal('definition') | concept.presentation['textualPresentation'].property | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_concept_property | internalId | None | foreign key |
|
| ||
VCS_concept_property | propertyCode | concept.property.property | No notes |
|
| ||
VCS_concept_property | propertySeq | None | Currently not used by HL7 |
|
| ||
VCS_concept_property | propertyValue | concept.property.text | No notes |
|
| ||
VCS_concept_property | language | concept.property.language | No notes |
|
| ||
VCS_concept_relationship | relationCode | association.association | No notes |
|
| ||
VCS_concept_relationship | sourceInternalId | associationInstance.sourceConcept | No notes |
|
| ||
VCS_concept_relationship | targetInternalId | associationTarget.targetConcept | No notes |
|
| ||
Model | modelID | systemRelease.releaseId | No notes |
|
| ||
Model | name | service.service | No notes |
|
| ||
Model | versionNumber | service.version | No notes |
|
| ||
Model | lastModifiedDate | systemRelease.releaseDate | No notes |
|
| ||
Model | developingOrganization | systemRelease.releaseAgency | No notes |
|
| ||
Model | committeeID | Note | No notes |
|
| ||
Model | description | systemRelease.entityDescription | No notes |
|
| ||
Model | concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN | No notes |
|
| ||
Model | literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
|
| ||
Model | preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder | No notes |
|
| ||
Model | modelID | commonTypes::Properties | No notes |
|
| ||
(Special mapping for NCI) | name | codingScheme.localName | No notes |
|
| ||
(Special mapping for NCI) | versionNumber | codingScheme.representsVersion | No notes |
|
| ||
(Special mapping for NCI) | lastModifiedDate | commonTypes::Properties | No notes |
|
| ||
(Special mapping for NCI) | developingOrganization | commonTypes::Properties | No notes |
|
| ||
(Special mapping for NCI) | committeeID | None | No notes |
|
| ||
(Special mapping for NCI) | description | codingScheme.entityDescription | No notes |
|
| ||
(Special mapping for NCI) | concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName | No notes |
|
| ||
(Special mapping for NCI) | literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
|
| ||
(Special mapping for NCI) | preceding-sibling/releaseOrder + 1 | commonTypes::Properties | No notes |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="26b7764d94c72bb5-19159917-4a424669-9b85a2d7-56f38ce2ce0d261351e19b6c"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="68c8441f354b0e72-7ae5436b-4b174312-ba90aafc-f4010f30ca1c7168ee8979fb"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain |
| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="98a2b7fd3e775c91-fd1581e5-4a2c40c3-b0148ddc-88db1cb5cf4719c713432f02"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="494b018a4ca59c23-0ca62277-44124ddc-9b23b168-f8655047250fc36cc8c25624"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="022428475e71a3c1-65fe644d-45e04e7c-91ae984c-d40cdb9219856649a869fe87"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain |
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a4b6d6e19c28ae72-19cc44ce-4a0a417c-930bad47-c66d9e2778c7f897adf40a6c"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_code_reference | referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
|
| ||
VOC_code_reference | referencesInternalId | None | Internal id's aren't exposed in lexGrid |
|
| ||
VOC_code_reference | relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
|
| ||
VOC_code_reference | includeReferencedCode | ...valueDomainEntry/isSelectable | No notes | Not in current implementation |
| ||
VOC_code_reference | leafOnly | None | Not used in HL7 Model |
|
| ||
VOC_code_reference | directChildrenOnly | None | Not used in HL7 Model |
|
| ||
VOC_code_reference | isHeadCode | None | Only used when referenced in VOC_value_set_constructor. |
|
| ||
VOC_code_reference | referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
|
| ||
VOC_code_reference | arbitraryUniqueValue() | .../valueDomainEntry.id | Notes |
|
| ||
VOC_registered_code_system | codeSystemId | None | VOC_registered_code_system isn't currently transferred to Lexgrid |
|
| ||
VOC_registered_code_system |
| sponsor | None | No notes |
|
| |
VOC_registered_code_system | publisher | None | No notes |
|
| ||
VOC_registered_code_system | versionReportingMethod | None | No notes |
|
| ||
VOC_registered_code_system | licensingInformation | None | This field should really be transfer to copyright? |
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VOC_registered_code_system | inUMLS | None | No notes |
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VOC_registered_code_system | systemSpecificLocatorInfo | None | No notes |
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VOC_registered_code_system | uri | None | No notes |
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VOC_registered_code_system | isExternal | None | No notes |
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VOC_value_set | valueSetId | valueDomain.registeredName | No notes |
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VOC_value_set | valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
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VOC_value_set | basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
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VOC_value_set | description | valueDomain.entityDescription | No notes |
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VOC_value_set | definingExpression | None | Not used. |
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VOC_value_set | allCodes | None | No notes |
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VOC_value_set | isTaxonomicSet | None | No mapping available |
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VOC_value_set | valueSetAuthority | None | Included in valueSetID |
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VOC_value_set | valueSetNumber | None | No notes |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="59f63cd979971f4e-7cc4f7e3-45e044dc-abf2813c-446b87ba770f9496430dd181"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) | No notes |
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| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_value_set_constructor | includesOrExcludesSet | valueDomainEntry.includesValueDomain | No notes |
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VOC_value_set_constructor | includeHeadCode | valueDomainEntry.isSelectable | No notes |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="890ae7beafa04fb9-ddf3d989-445d4250-98eda95d-f986c8ee59d1be247df002ee"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor |
| valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode | Assumes that there always is a head code. |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
|
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| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2268ceb25d4c998e-65f34441-4c084f82-94af83be-30638ef259e99d2277f53d6d"><ac:plain-text-body><![CDATA[ | VOC_vocabulary_domain_value_set | definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="aa5ef9f467dc8623-2246fd51-4f7b462a-8c09ad27-5a62087afc27ec59c35c72ce"><ac:plain-text-body><![CDATA[ | VOC_vocabulary_domain_value_set | appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_release_version | releaseId | codingSchemeVersion.version | Note: this is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
|
| ||
VCS_release_version |
| valueDomainVersion.version | Set iff one or more value sets change |
|
| ||
VCS_release_version | literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
|
| ||
VCS_release_version | releaseAgency | None | No notes |
|
| ||
VCS_release_version | releaseDate | codingSchemeVersion.versionDate | No notes |
|
| ||
VCS_release_version | valueDomainVersion.versionDate | None | No notes |
| |||
VCS_release_version | description | codingSchemeVersion.entityDescription | No notes |
|
| ||
VCS_release_version | valueDomainVersion.entityDescription | None | No notes |
| |||
VCS_release_version | editorID | None | There is no place for these currently. |
|
| ||
VCS_release_version | forWhomID | None | There is no place for these currently. |
|
| ||
VCS_release_version | concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | None | This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
|
|
LexGrid Text Mapping
The following table lists Source Definition column contents.
Source Definition | Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | Comments | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Line | 1 | <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | version |
| description | copyright | This must be the first line. It contains the coding scheme metadata. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c78de3852bfb46b1-adbdbe70-4b9a4255-a6378f2f-120810afe681b91ab9a613ad"><ac:plain-text-body><![CDATA[ | Line | 2 | [<code>] | <name> | description | None | None | None | None | None | Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5da51bb5ad3ef8b0-6ace962c-43e241db-8e38ada9-bb93cb58ce6e4cd614e51189"><ac:plain-text-body><![CDATA[ | Line | 3 | [<code>] | <name> | description | None | None | None | None | None | Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
The following table lists text elements for Coding Scheme.
Text Element | LexGrid | Comments |
---|---|---|
Coding Scheme | LexGrid | Comments |
codingSchemeName | codingScheme.codingSchemeName | None |
codingSchemeId | codingScheme.codingSchemeId | None |
defaultLanguage | codingScheme.defaultLanguage | None |
formalName | codingScheme.formalName | None |
version | codingScheme.representsVersion | Optional |
source | codingScheme.source | Optional |
description | codingScheme.entityDescription | Optional |
copyright | codingScheme.copyright | Optional |
Concepts | LexGrid | Comments |
code | concept.conceptCode | Optional |
name | concept.conceptName | None |
description | concept.entityDescription | None |
Scrollbar | ||
---|---|---|
|
...
An association between one class (domain) and one asscoication (domain and hasDataProperty). The conceptProperty defines the ra
concept.conceptProperty.text = "owl:intersectionOf
No comments
concept.presentation.propertyName (inherited from Propert
SRFLD
...