Page History

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* [Documentation Main Page|https://wiki.nci.nih.gov/x/hC5yAQ]
* [Creation of the Cancer Gene Index|https://wiki.nci.nih.gov/x/DS9yAQ]
* [Data, Metadata, and Annotations|https://wiki.nci.nih.gov/x/zC1yAQ]
* [Cancer Gene Index Gene-Disease and Gene-Compound XML Documents|https://wiki.nci.nih.gov/x/8i1yAQ]
* [caBIO APIs|https://wiki.nci.nih.gov/x/7zByAQ]
* [Cancer Gene Index Shared Parsed Data and Code|https://wiki.nci.nih.gov/x/hzJyAQ]
* [caBIO Portlet Templated Searches|https://wiki.nci.nih.gov/x/0C9yAQ]
* [caBIO Home Page|https://wiki.nci.nih.gov/x/TTByAQ]
* [caBIO iPhone Application|https://wiki.nci.nih.gov/x/VDFyAQ]
* [caBIO Portlet Simple Searches|https://wiki.nci.nih.gov/x/-TByAQ]
* [Glossary|https://wiki.nci.nih.gov/x/si9yAQ]
* [Credits and Resources|https://wiki.nci.nih.gov/x/yS9yAQ]
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h1. caBIO Portlet Templated Search Overview
caBIO is a resource that integrates biomedical data on genes, proteins, clinical protocols, disease ontologies, pharmacological agents, pathways, and other entities with annotations, controlled vocabularies, and metadata models originating from [twenty-three data sources|https://wiki.nci.nih.gov/x/DoCl], including the Cancer Gene Index, the Pathway Interaction Database, and the University of California, Santa Cruz Distributed Annotation System.

The [Templated Search tool of the caBIO Portlet on the caGrid Portal|http://cagrid-portal.nci.nih.gov/web/guest/community?p_p_id=cabioportlet_WAR_cabioportlets_INSTANCE_R7dp&p_p_lifecycle=0&p_p_state=normal&p_p_mode=view&p_p_col_id=column-1&p_p_col_count=1&_cabioportlet_WAR_cabioportlets_INSTANCE_R7dp_struts_action=%2Fcabioportlet%2Fview&tabs1=Templated%20Searches] quickly retrieves all genes that are associated with a particular disease, all of the genes associated with a particular compound, or all of the diseases and compounds that are associated with a particular gene. In addition, you also can evaluate the evidence from which these associations originated and the [codes|Data, Metadata, and Annotations#Evidence Codes] and [details|Data, Metadata, and Annotations#Role] that describe these associations. By using the caBIO Object Graph Browser, you may also view other annotations, such as [sentence status flags|Data, Metadata, and Annotations#sentence status flags], [negation indicators|Data, Metadata, and Annotations#Indicators], [cell line indicators|Data, Metadata, and Annotations#Indicators], and organism name.

!TemplatedSearchHome.jpg|alt="Templated Search Home"!

h1. Step-by-step Guides
To use the Templated Search tool, follow the step-by-step instructions for using the Templated Search to find
* [genes associated with a disease|https://wiki.nci.nih.gov/x/3C9yAQ], 
* [genes associated with a compound|https://wiki.nci.nih.gov/x/MTByAQ], or 
* [compounds and diseases associated with a gene|https://wiki.nci.nih.gov/x/QTByAQ].

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