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Introduction
LexEVS CTS2 Export API provides capability to export complete or partial contents of Code System, Value Sets and Association.
Export Interfaces
There are three major export interfaces proved:
- Code System exporter - Provides capability to export complete or partial contents of Code System.
- Value Sets exporter - Provides capability to export Value Set Definition or Value Set Resolution (Expanded Value Set).
- Association exporter - Provides capability to export Associations.
Each of these interfaces can be accessed using:
| Code Block |
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:title} {section} {column:width=75%} {panel:title=Contents of this Page} {toc:minLevel=2} {panel} {column} {column} {align:right}{include:Menu LexEVS 6.0 CTS2 to Include}{align} {column} {section} h2. Introduction LexEVS CTS2 Export API provides capability to export complete or partial contents of Code System, Value Sets and Association. h2. Export Interfaces There are three major export interfaces proved: * Code System exporter - Provides capability to export complete or partial contents of Code System. * Value Sets exporter - Provides capability to export Value Set Definition or Value Set Resolution (Expanded Value Set). * Association exporter - Provides capability to export Associations. Each of these interfaces can be accessed using: {code} org.lexevs.cts2.admin.export.CodeSystemExportOperation csExportOp = new org.lexevs.cts2.LexEvsCTS2Impl().getAdminOperation().getCodeSystemExportOperation(); org.lexevs.cts2.admin.export.ValueSetExportOperation vsExportOp = new org.lexevs.cts2.LexEvsCTS2Impl().getAdminOperation().getValueSetExportOperation(); org.lexevs.cts2.admin.export.AssociationExportOperation assnExportOp = new org.lexevs.cts2.LexEvsCTS2Impl().getAdminOperation().getAssociationExportOperation(); {code} h3. Code System Exporter {{ |
Code System Exporter
org.lexevs.cts2.admin.export.CodeSystemExportOperation
...
is
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the
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main
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interface
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which
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can
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be
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used
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to
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export
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complete
...
or
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partial
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Code
...
System
...
contents.
...
This
...
interface
...
can
...
be
...
accessed
...
using
...
main
...
LexEVSCTS2
...
interface,
...
like:
| Code Block |
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} org.lexevs.cts2.admin.export.CodeSystemExportOperation csExportOp = new org.lexevs.cts2.LexEvsCTS2Impl().getAdminOperation().getCodeSystemExportOperation(); {code} |
There
...
are
...
three
...
different
...
methods
...
available
...
to
...
export
...
Code
...
System:
...
- Export
...
- complete
...
- Code
...
- System
...
- -
...
- This
...
- method
...
- provides
...
- capability
...
- to
...
- export
...
- Code
...
- System
...
- contents
...
- using
...
- the
...
- exporter
...
- specified.
...
- Export
...
- Coded
...
- Node
...
- Set
...
- -
...
- This
...
- method
...
- provides
...
- capability
...
- to
...
- export
...
- entities
...
- that
...
- matches
...
- certain
...
- restrictions
...
- (like
...
- matching
...
- designation,
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- concept
...
- code,
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- property
...
- etc).
...
- Export
...
- Coded
...
- Node
...
- Graph
...
- -
...
- This
...
- method
...
- provides
...
- capability
...
- to
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- export
...
- entities
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- that
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- are
...
- part
...
- of
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- selected
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- graph
...
- (like
...
- association,
...
- source
...
- code,
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- target
...
- code
...
- etc).
...
Export
...
Complete
...
Code
...
System
...
This
...
function
...
exports
...
contents
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of
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the
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code
...
system
...
using
...
the
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exporter
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specified.
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By
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default,
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LexEVS
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comes
...
with
...
following
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exporters:
...
- LexGrid
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- Exporter
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- -
...
- exports
...
- contents
...
- in
...
- LexGrid
...
- XML
...
- format
...
- OBO
...
- Exporter
...
- -
...
- exports
...
- contents
...
- in
...
- OBO
...
- format
...
- OWL
...
- Exporter
...
- -
...
- exports
...
- contents
...
- in
...
- OWL/RDF
...
- format
...
exportCodeSystemContent(String
...
codeSystemNameOrURI,
...
String
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codeSystemVersion,
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URI
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exportDestination,
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Exporter
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exporter)
...
Description: |
|---|
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Exports |
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contents |
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of |
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the |
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code |
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system |
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using |
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the |
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exporter |
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specified. |
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Input: |
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Output: |
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java.net.URI |
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- |
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URI |
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of |
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destination |
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if |
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successfully |
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exported | |
Exception: | org.LexGrid.LexBIG.Exceptions.LBException |
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Sample Call: |
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Export Coded Node Set
This function resolves the given CodedNodeSet(CNS)
...
and
...
exports
...
the
...
contents
...
in
...
LexGrid
...
XML
...
format.
...
There
...
is
...
a
...
helper
...
method
...
getCodeSystemCodedNodeSet(String
...
codeSystemNameOrURI,
...
String
...
codeSystemVersion)
...
that
...
could
...
be
...
used
...
to
...
get
...
the
...
Coded
...
Node
...
Set
...
object
...
for
...
given
...
Code
...
System
...
Version,
...
and
...
could
...
apply
...
further
...
restrictions
...
(ex:
...
matchingDesignation,
...
Status,
...
Properties,
...
Codes
...
etc).
...
And
...
this
...
Coded
...
Node
...
Set
...
object
...
could
...
be
...
supplied
...
to
...
this
...
export
...
method
...
which
...
resolves
...
it
...
and
...
exports
...
the
...
contents
...
in
...
LexGrid
...
XML
...
format.
...
exportCodedNodeSet(String
...
codeSystemNameOrURI,
...
String
...
codeSystemVersion,
...
CodedNodeSet
...
cns,
...
URI
...
exportDestination,
...
boolean
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overwrite,
...
boolean
...
stopOnErrors,
...
boolean
...
async)
...
Description: |
|---|
...
Resolves |
...
the |
...
given |
...
CodedNodeSet(CNS) |
...
and |
...
exports |
...
the |
...
contents. |
...
Input: |
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| |
Output: | java.net.URI |
|---|
...
- |
...
URI |
...
of |
...
destination |
...
if |
...
successfully |
...
exported | |
Exception: | org.LexGrid.LexBIG.Exceptions.LBException |
|---|
...
Sample Call: |
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...
Export Coded Node Graph
This function resolves the given CodedNodeGraph(CNG)
...
and
...
exports
...
the
...
contents
...
in
...
LexGrid
...
XML
...
format.
...
There
...
is
...
a
...
helper
...
method
...
getCodeSystemCodedNodeGraph(String
...
codeSystemNameOrURI,
...
String
...
codeSystemVersion)
...
that
...
could
...
be
...
used
...
to
...
get
...
the
...
Coded
...
Node
...
Graph
...
object
...
for
...
given
...
Code
...
System
...
Version,
...
and
...
could
...
apply
...
further
...
restrictions
...
(ex:
...
associations,
...
SourceCodes,
...
TargetCodes,
...
etc).
...
And
...
this
...
Coded
...
Node
...
Graph
...
object
...
could
...
be
...
supplied
...
to
...
this
...
export
...
method
...
which
...
resolves
...
it
...
and
...
exports
...
the
...
contents
...
in
...
LexGrid
...
XML
...
format.
...
exportCodedNodeGraph(String
...
codeSystemNameOrURI,
...
String
...
codeSystemVersion,
...
CodedNodeGraph
...
cng,
...
URI
...
exportDestination,
...
boolean
...
overwrite,
...
boolean
...
stopOnErrors,
...
boolean
...
async)
...
Description: | Resolves the given CodedNodeGraph(CNG) |
|---|
...
and |
...
exports |
...
the |
...
contents. |
...
Input: |
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|---|
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Output: |
|---|
...
java.net.URI |
...
- |
...
URI |
...
of |
...
destination |
...
if |
...
successfully |
...
exported | |
Exception: | org.LexGrid.LexBIG.Exceptions.LBException |
|---|
...
Sample Call: |
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Value Set Exporter
org.lexevs.cts2.admin.export.ValueSetExportOperation
...
is
...
the
...
main
...
interface
...
which
...
can
...
be
...
used
...
to
...
export
...
Value
...
Set
...
Definition
...
or
...
Value
...
Set
...
Resolution
...
(Expanded
...
Value
...
Set).
...
This
...
interface
...
can
...
be
...
accessed
...
using
...
main
...
LexEVSCTS2
...
interface,
...
like:
...
org.lexevs.cts2.admin.export.ValueSetExportOperation
...
vsExportOp
...
=
...
new
...
org.lexevs.cts2.LexEvsCTS2Impl().getAdminOperation().getValueSetExportOperation();
...
There
...
are
...
three
...
different
...
methods
...
available
...
to
...
export
...
Value
...
Set:
...
- Export
...
- Value
...
- Set
...
- Definition
...
- -
...
- This
...
- method
...
- provides
...
- capability
...
- to
...
- export
...
- Value
...
- Set
...
- Definition
...
- in
...
- LexGrid
...
- XML
...
- format.
...
- This
...
- will
...
- be
...
- helpful
...
- if
...
- there
...
- is
...
- a
...
- need
...
- to
...
- import
...
- this
...
- exported
...
- Value
...
- Set
...
- Definition
...
- in
...
- different
...
- instance
...
- of
...
- LexEVS.
...
- Export
...
- Expanded
...
- Value
...
- Set
...
- using
...
- custom
...
- exporter
...
- -
...
- This
...
- method
...
- provides
...
- capability
...
- to
...
- export
...
- contents
...
- of
...
- Value
...
- Set
...
- using
...
- custom
...
- exporter.
...
- This
...
- will
...
- be
...
- helpful,
...
- if
...
- you
...
- want
...
- the
...
- contents
...
- exported
...
- in
...
- format
...
- other
...
- than
...
- LexGrid
...
- XML.
...
- Export
...
- Expanded
...
- Value
...
- Set
...
- in
...
- LexGrid
...
- XML
...
- format
...
- -
...
- This
...
- method
...
- provides
...
- capability
...
- to
...
- export
...
- contents
...
- of
...
- Value
...
- Set
...
- using
...
- default
...
- LexGrid
...
- Exporter
...
- which
...
- exports
...
- in
...
- LexGrid
...
- XML
...
- format.
...
Export Value Set Definition
This method provides capability to export Value Set Definition in LexGrid XML format. This will be helpful if there is a need to import this exported Value Set Definition in different instance of LexEVS.
exportValueSetDefinition(URI valueSetDefinitionURI, String valueSetDefinitionVersion, String xmlFullPathName, boolean overwrite, boolean failOnAllErrors)
Description: | Export Value Set Definition to LexGrid canonical XML format. |
|---|---|
Input: |
|
Output: | None |
Exception: | org.LexGrid.LexBIG.Exceptions.LBException |
...
Sample Call: |
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Export Expanded Value Set Using Custom Exporter
This method provides capability to export contents of Value Set using custom exporter. This will be helpful when there is a requirement to export value set contents in format other than LexGrid XML. There is a helper method getSupportedExporterNames() that could be used to get all the exporters loaded and supported by current LexEVS instance. So, if you have your custom exporter deployed as an extension to LexEVS Exporter, it will be in the list of exporters returned by method getSupportedExporterNames().
exportValueSetContents(URI valueSetDefinitionURI, String valueSetDefinitionVersion, URI exportDestination, String exporter)
Description: | Exports contents of the Value Set Definition using the exporter specified. | ||
|---|---|---|---|
Input: |
| ||
Output: | java.net.URI - URI of destination if successfully exported | ||
Exception: | org.LexGrid.LexBIG.Exceptions.LBException | ||
Sample Call: |
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Export Expanded Value Set in LexGrid XML Format
This method provides capability to export contents of Value Set as a Code System using LexGrid Exporter which exports in LexGrid XML format.
exportValueSetContents(URI valueSetDefinitionURI, String valueSetDefinitionVersion, URI exportDestination, AbsoluteCodingSchemeVersionReferenceList csVersionList, String csVersionTag, boolean overwrite, boolean failOnAllErrors)
Description: | Exports contents of Value Set as Code System in LexGrid canonical XML format. |
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Output: |
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java.net.URI |
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- |
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URI |
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of |
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destination |
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if |
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successfully |
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exported. |
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Exception: | org.LexGrid.LexBIG.Exceptions.LBException |
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Sample Call: |
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Association Exporter - Export Association
org.lexevs.cts2.admin.export.AssociationExportOperation
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is
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the
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main
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interface
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which
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can
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be
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used
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to
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export
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Association(s).
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This
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interface
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can
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be
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accessed
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using
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main
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LexEVSCTS2
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interface,
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like:
| Code Block |
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} org.lexevs.cts2.admin.export.AssociationExportOperation assnExportOp = new org.lexevs.cts2.LexEvsCTS2Impl().getAdminOperation().getAssociationExportOperation(); {code} Method *exportAssociation* provides capability to apply filters and export |
Method exportAssociation provides capability to apply filters and export association(s)
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in
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LexGrid
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XML
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format.
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exportAssociation(String
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codeSystemNameOrURI,
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String
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codeSystemVersion,
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CodedNodeGraph
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cng,
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URI
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exportDestination,
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boolean
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overwrite,
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boolean
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stopOnErrors,
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boolean
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async)
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Description: |
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Export |
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Association(s) |
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in |
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LexGrid |
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canonical |
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XML |
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format. |
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Input: |
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Output: |
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None | |
Exception: | org.LexGrid.LexBIG.Exceptions.LBException |
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Sample Call: |
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Exporter Mappings - OwlRdf Exporter Mapping
OwlRdf exporter is based on Jena 2.6.3.
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It
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use
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SDB
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to
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build
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up
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triple
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store.
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The
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triple
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store
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tables
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are
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under
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the
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same
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database
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of
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LexEvs.
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LexEvs
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retrieval
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api
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does
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not
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support
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to
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fetch
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AssociatedData.
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It
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cannot
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retrieve
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the
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association
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that
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is
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from
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an
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entity
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to
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a
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data/value.
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The
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owl/rdf
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exporter,
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based
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on
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LexEVS
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has
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the
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limiation
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of
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handling
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the
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owl:hasValue,
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owl:maxCardinality,
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owl:minCardinality,
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owl:cardinality
...
constraints
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as
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well.
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LexGrid | Owl/Rdf | Comment |
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CodingScheme |
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codingScheme | owl:Ontology |
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codingScheme.source | dc:source | a property of owl:ontology |
codingScheme.copyright | dc:right | a property of owl:ontology |
codingScheme.Name | rdfs:label | a property of owl:ontology |
codingScheme.URI | xmlns | a property of owl:ontology |
codingScheme.representVersion | owl:versionInfo | a property of owl:ontology |
codingScheme.formalName | dc:title | a property of owl:ontology |
codingScheme.defaultLanguage | dc:language | a property of owl:ontology |
codingScheme.approxNumConcpts | not mapped |
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Entity |
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entity | skos:Concept |
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concept | owl:Class |
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instance entity | owl:Thing |
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associationEntity | owl:property | owl:objectProperty or owl:datatypeProperty |
entityCode | rdf:ID | local name |
entityCodeNamespace | xmlns |
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isDefined | LexRDF:isDefined | LexRDF is a namespace generated by Mayo |
Property |
| Use reification statement for the property's property |
property | owl:AnnotationProperty when no type specified |
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language | dc:language |
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source | dc:source |
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comment | skos:note |
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presentation | skos:altLabel, skos:prefLabel | According to lg isPrefered |
definition | skos:definition |
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isPreferred | LexRDF:isPreferred |
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degreeOfFidelity | LexRDF:degreeOfFidelity |
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matchIfNoContext | LexRDF:matchIfNoContext |
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representationForm | LexRDF:presentationForm |
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propertyLink | LexRDF:propertyLink |
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Association |
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associationPredicate.associationName | rdf:id |
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associationEntity | owl:property | owl:objectProperty or owl:datatypeProperty |
associationEntity.forwardName | rdf:id | if not null |
associationEntity.isTransitive | owl:TransitiveProperty |
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| Wiki Markup |
|---|
|| Comment ||
|| CodingScheme || || ||
| codingScheme | owl:Ontology | |
| codingScheme.source | dc:source | a property of owl:ontology |
| codingScheme.copyright | dc:right | a property of owl:ontology |
| codingScheme.Name | rdfs:label | a property of owl:ontology |
| codingScheme.URI | xmlns | a property of owl:ontology |
| codingScheme.representVersion | owl:versionInfo | a property of owl:ontology |
| codingScheme.formalName | dc:title | a property of owl:ontology |
| codingScheme.defaultLanguage | dc:language | a property of owl:ontology |
| codingScheme.approxNumConcpts | not mapped | |
|| Entity || || ||
| entity | skos:Concept | |
| concept | owl:Class | |
| instance entity | owl:Thing | |
| associationEntity | owl:property | owl:objectProperty or owl:datatypeProperty |
| entityCode | rdf:ID | local name |
| entityCodeNamespace | xmlns | |
| isDefined | LexRDF:isDefined | LexRDF is a namespace generated by Mayo |
|| Property || || Use reification statement for the property's property ||
| property | owl:AnnotationProperty when no type specified | |
| language | dc:language | |
| source | dc:source | |
| comment | skos:note | |
| presentation | skos:altLabel, skos:prefLabel | According to lg isPrefered |
| definition | skos:definition | |
| isPreferred | LexRDF:isPreferred | |
| degreeOfFidelity | LexRDF:degreeOfFidelity | |
| matchIfNoContext | LexRDF:matchIfNoContext | |
| representationForm | LexRDF:presentationForm | |
| propertyLink | LexRDF:propertyLink | |
|| Association || || ||
| associationPredicate.associationName | rdf:id | |
| associationEntity | owl:property | owl:objectProperty or owl:datatypeProperty |
| associationEntity.forwardName | rdf:id | if not null |
| associationEntity.isTransitive | owl:TransitiveProperty | |
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