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Title: caArray FAQ and In-depth Articles  
Author: Unknown User (brennanrm) Jun 03, 2011
Last Changed by: Unknown User (wileyal) Nov 13, 2013
Tiny Link: (useful for email) https://wiki.nci.nih.gov/x/b5GNAg
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ICR - caArray2 (1)
    Page: caArray 093 - How To Build caArray From Source Code - An Illustrated Tutorial
Hierarchy
Parent Page
    Home page: caArray
Children (93)
    Page: caArray 001 - UPT required for caArray or other application tools in LSD Bundle
    Page: caArray 002 - Uploading MicroArray Gene Expression Data into caArray
    Page: caArray 003 - Creating a caArray user with UPT
    Page: caArray 004 - Access to the geWorkbench application from caArray
    Page: caArray 005 - Creating an empty database prior to caArray or other LSD tool installations
    Page: caArray 006 - Step by Step Guide to Install caArray 2.x Grid Service (caArray 2.2 and Under)
    Page: caArray 007 - MAGE-TAB Files
    Page: caArray 008 - Using the Annotations tab or MAGE-TAB annotation files to annotate an experiment
    Page: caArray 009 - Highlights for Building caArray's MAGE-TAB Annotation Files
    Page: caArray 010 - Location of the Array Design Files for caArray
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Nov 13, 2013 11:42 Unknown User (wileyal) View Changes
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Nov 13, 2013 11:42 Unknown User (wileyal) View Changes
Migration of unmigrated content due to installation of a new plugin
Nov 13, 2013 11:42 Unknown User (wileyal) View Changes
Migration of unmigrated content due to installation of a new plugin
Nov 13, 2013 11:42 Unknown User (wileyal) View Changes
Migration of unmigrated content due to installation of a new plugin
Nov 13, 2013 11:42 Unknown User (wileyal)  
Migration of unmigrated content due to installation of a new plugin
Outgoing Links
External Links (3)
    https://wiki.nci.nih.gov/x/ygGy
    https://wiki.nci.nih.gov/download/attachments/42832153/CaAr…
    mailto:ncicbiit@mail.nih.gov
ICR - caArray2 (90)     Page: caArray 057 - caArray deployed in Eclipse - exception when caArray tested
    Page: caArray 025 - caArray version control on uploaded files not supported
    Page: caArray 082 - Datafile imported but not downloadable
    Page: caArray 065 - Amending the ownership for a deleted user's experiment
    Page: caArray 010 - Location of the Array Design Files for caArray
    Page: caArray 007 - MAGE-TAB Files
    Page: caArray 003 - Creating a caArray user with UPT
    Page: caArray 030 - Ports required for caArray to run
    Page: caArray 017 - Meaning of the caArray Status of Importing - Imported versus Imported Not Parsed
    Page: caArray 026 - Changing the port number after caArray installation
    Page: caArray 054 - Step-By-Step Guide to Install and Use caArray Importer
    Page: caArray 058 - Guidelines for applying OS patching and Java updates on servers running caArray
    Page: caArray 070 - An error reports the wrong version of Java
    Page: caArray 031 - Installing caArray on multiple servers
    Page: caArray 086 - UPT installed successfully but could not log in as the super user to set up caArray
    Page: caArray 016 - File Parsing into caArray
    Page: caArray 011 - Invalid Login or No Application found error when logging in via UPT
    Page: caArray 006 - Step by Step Guide to Install caArray 2.x Grid Service (caArray 2.2 and Under)
    Page: caArray 042 - User password field in new user creation in UPT
    Page: caArray 032 - Recovering a mistakenly deleted experiment from a caArray database backup
    Page: caArray 015 - Solving caArray 2.2.0-plus problems with localhost and related issues
    Page: caArray 041 - caArray Account Management
    Page: caArray 046 - Management Account Ownership
    Page: caArray 092 - Importing Data into caArray
    Page: caArray 059 (DEPRECATED) - Download for the caArray 2.3.1 GUI Installer
    Page: caArray 018 - Cause of the error Failed Validation
    Page: caArray 061 - Difference between the annotation options that are available when importing data
    Page: caArray 078 - Browsers supported by caArray
    Page: caArray 008 - Using the Annotations tab or MAGE-TAB annotation files to annotate an experiment
    Page: caArray 091 - Internet connection not needed for the caArray GUI installer
    Page: caArray 095 - Lists of Must-Have and Nice-to-Have Features to Support Next-Generation Sequencing Data
    Page: caArray 075 - Difference between the Group in the UPT and the Collaboration Group in caArray
    Page: caArray 004 - Access to the geWorkbench application from caArray
    Page: caArray 005 - Creating an empty database prior to caArray or other LSD tool installations
    Page: caArray 100 - caArray Audit Trails
    Page: caArray 039 - Array Design Files
    Page: caArray 094 - Handling Array Designs
    Page: caArray 029 - Changing the caArray admin e-mail address after installation
    Page: caArray 040 - caArray Global Settings
    Page: caArray 074 - Renaming a design file and using it in a study
    Page: caArray 028 - Pointing the caArray grid service to a different grid indexing service
    Page: caArray 023 - Upload of microarray datafiles by multiple users under the same experiment
    Page: caArray 087 - Error Message When Attempting to Validate an Illumina SNP Data File in caArray
    Page: caArray 077 - Increasing time-out period when running CQL queries
    Page: caArray 062 - Complete list of caArray service URLs
    Page: caArray 019 - caArray File Loading Process
    Page: caArray 066 - Installation for caArray installation or upgrade failed - finding the error log
    Page: caArray 052 - Cannot find an array design file in caArray
    Page: caArray 080 - A Step-by-Step Guide to Create a MAGE-TAB Template Specific to RPLA Project
    Page: caArray 084 - Changing user passwords in caArray
    Page: caArray 001 - UPT required for caArray or other application tools in LSD Bundle
    Page: caArray Demos
    Page: caArray 083 - Deleting the legacy files during caArray upgrade
    Page: caArray 051 - Columns in Illumina expression csv array design files acceptable in caArray
    Page: caArray 037 - MAGE-TAB Files
    Page: caArray 068 - Contents of an audit file
    Page: caArray 047 - Creating a caArray account with UPT
    Page: caArray 081 - caArray and caIntegrator2 sharing the same version of the UPT application
    Page: caArray 002 - Uploading MicroArray Gene Expression Data into caArray
    Page: caArray 076 - Uploading and storing QC data in caArray
    Page: caArray 093 - How To Build caArray From Source Code - An Illustrated Tutorial
    Page: caArray 022 - Changing the ownership of the experiment in caArray
    Page: caArray 071 - Checking if I am actually on caGrid sharing my microarray data
    Page: caArray 089 - Uploading Very Large Datasets
    Page: caArray 036 - Working with Array Design Files in caArray
    Page: caArray 013 - Size or format limitation on the files uploaded to caArray
    Page: caArray 034 - Editing an experiment that has already been made public
    Page: caArray 012 - Adding an organism to the Organism List in caArray
    Page: caArray 053 - Removing the lock on my UPT superuser account
    Page: caArray 033 - Version compatibility between geWorkbench and caArray
    Page: caArray 090 - Changing the inactivity session timeout delay
    Page: caArray 043 - Manage the Public Visibility of a caArray Experiment
    Page: caArray 045 - User registration is unable to send the user an email to confirm registration
    Page: caArray 056 - Importing an Affy .TXT file into caArray
    Page: caArray 067 - Resolving an error with unpacking the zip files
    Page: caArray 050 - Introduction to caArray - Browse and Search caArray Repository
    Page: caArray 020 - Configuring Eclipse for caArray
    Page: caArray 014 - Files that can be uploaded into caArray
    Page: caArray 027 - Avoiding a JBOSS port conflict between applications such as caArray and caTissue Suite
    Page: caArray 079 - Secure Grid services for caArray not supported
    Page: caArray 044 - caArray grid service - Analytical or Data Service
    Page: caArray 072 - Deleting an experiment with the status as In Progress
    Page: caArray 038 - caArray Experiment Management
    Page: caArray 049 - Introduction to caArray - a High-level Workflow
    Page: caArray 060 - Exporting experiment annotation and data file into MAGE-TAB and GEO SOFT formats
    Page: caArray 024 - Access for caArray user account with system administrator role to all experimental data
    Page: caArray 009 - Highlights for Building caArray's MAGE-TAB Annotation Files
    Page: caArray 021 - Configuring caArray for LDAP authentication
    Page: caArray 035 - Choosing the correct caArray access role for a user
    Page: caArray 088 - Finding Information on an Experiment