Managing the Data Basket
After you search for items in TCIA and add them to your data basket, click Manage Data Basket in the top menu to see the list of those items you added during this work session only in the My Data Basket page.
The following is an example of the My Data Basket page with just one image collection in it. The estimated download time and total size of your data basket appear at the bottom.
The following table describes each item in the table.
Data Basket Field | Description |
---|---|
Subject ID | Subject identification number |
Study UID | Study identification number |
Study Date | Date of study |
Study Description | Description of the study |
Series ID | Series identification number |
Series Description | Description of the series |
Number of Images | Number of Images for series |
Image Size (in MB) | Size of the image file in megabytes |
Annotation File Size (in MB) | Size of the annotations file in megabytes. This column is N/A if there are no annotations. |
Remove | Remove the item from the basket. |
To delete all items from your basket, click the Empty Data Basket link. You can continue to add items to your data basket from the Search Results pages.
Deletion details
If the series you mark for deletion is part of a shared list, a message appears alerting you to that fact. The message also includes the name of the shared list and the shared list creator's email address. This gives you the opportunity to back out of the deletion. For more information see Working With Shared Lists.
You can now download the data in your data basket using the TCIA Downloader. You must install it before you proceed with downloading.
Using the TCIA Downloader
Using the Temporary TCIA Downloader (JNLP)
However, if you cannot download the application, the alternative is to use the Temporary Downloader, a Java Network Launch Protocol (JNLP) file previously called the NBIA Download Manager.
The Temporary Downloader allows you to replicate items in your Data Basket, downloading them to your local machine. It is a Java program and requires that you install a Java Runtime Environment (JRETM) on your machine to run it. You can download the JRE . The Temporary Downloader does not limit the total size of the download.
JRE
You must have version 8 or higher of the Java Runtime Environment (JRE) installed to be able to open the Download Manager.
- If JRE 8 is installed, the Temporary Downloader attempts to start. To run the application, you must click Run in the Warning dialog box indicating the application's digital signature cannot be verified. Before doing so, you can select the More Information... link at the bottom of the dialog to view a more detailed report of any security issues. Then you can evaluate whether you want to run the application.
- If JRE is installed but the version is older than version 6, the browser automatically attempts to upgrade the JRE to version 8.
If the JRE is not installed, when you click the Download Manager button, the browser prompts you for what it should do with the JNLP file. The My Data Basket page includes a link to a page where you can download the JRE.
If the Temporary Downloader fails to work properly, this could be a JRE version issue. The Temporary Downloader has been tested successfully with Version 8 Update 101.
Java Security settings
Java Security may block the installation of the Temporary Downloader. You may see a window like the following.
To resolve this issue, do the following.
- Select Start menu > Configure Java.
The Java Control Panel appears. - Select the Security tab.
- Click Edit Site List and then enter https://imaging.nci.nih.gov as the location.
- Click OK.
- Click the JNLP file to run the Temporary Downloader again.
A message window appears, asking you if you want to run this application. - Select I accept the risk and want to run this application.
- Click Run.
The Temporary Downloader successfully launches.
Removing items
The Temporary Downloader initially lists everything in your data basket. You can remove items from the Downloads list in the Temporary Downloader that you do not want to download. When you remove an item from the list, it remains in the data basket. You just do not download it.
To download objects using the Temporary Downloader
Mac OS X
The following instructions apply to Windows PCs but you can also use the Temporary Downloader on Mac OS X .
- At the top of the My Data Basket page, click the Download Manager link. You are prompted to open or save the temporary Downloader. Open it in the JRETM you installed. If you have any issues opening the Temporary Downloader, see the note about Java Security settings.
The page lists all items you selected in the data basket. You can hover your mouse over the Patient ID, Study Instance, and Series Instance columns to reveal the complete corresponding IDs. You can also resize a column by selecting and dragging the column border. - Click Browse to navigate to the destination where you want the images/annotations to be downloaded.
Click Start to begin the download. You can monitor the download in the Progress column. The Status column indicates when the download for each item is complete.
At any point in the process, you can click the Pause and Resume buttons to temporarily stop and restart the process.
Note that files downloaded this way are not compressed. The downloaded files are stored in a child folder under the destination folder such as
Collection name/patient id/study instance UID/series instance UID/image SOP instance UID
.
Removing items
The Temporary Downloader initially lists everything in your data basket. You can remove items from the Downloads list in the Temporary Downloader that you do not want to download. When you remove an item from the Downloads list, it remains in the data basket. You just do not download it.
Network error?