Report
Goals
| Project | Goal | Assigned to | Accomplished? | |
|---|---|---|---|---|
| 1 | ICDC | Create schematics and a design document to access data files - formalize how this is going to work | Dimitri | Work still in progress. |
| 2 | ICDC | Create a sustainable style guide for user interface | Dimitri | Done, but still work in progress. |
| 3 | ICDC | Create All cases view to display the case using GraphQL API | Ajay | Done. |
| 4 | ICDC | Implement a 404 error page and re position header logos | Ajay | Done. |
| 5 | ICDC | Create GraphQL query for: dashboard, program details, cases of study, files of study, aliquotes of study,files of sample, files of cases, and samples of study | Yizhen | Done, but QA not done. |
| 6 | ICDC | Validate input data against data model, give detailed error messages if any, only load data if passed validation. | Ming | Done. |
| 7 | ICDC | Data loader should be able to read inputs file from a given S3 bucket. | Ming | Done. |
| 8 | ICDC | Re-configure the existing NCATS data transformation such that it outputs Neo4J-ready loading files, and generate the appropriate .txt loading files. | Kevin | Done. |
| 9 | ICDC | Update the data model so as to completely remove the Evaluation node and its relationships: | Phil | Done. |
| 10 | ICDC | Re-transform and load COTC007B Course Initiation data into Neo4J | Phil | Done. |
| 11 | ICDC | Re-configure the existing transformations for longitudinal medical observations from COTC007B into Neo4J-ready loading files, and generate the appropriate .txt loading files for Physical Exam, Vital Signs and Extent of Disease records. | Phil | Done. |
| 12 | ICDC | Investigate parallel Pentaho-based transformation of grouped source files | Kevin | Done. |
| 13 | ICDC | Load longitudinal medical observations from COTC007B , COTC010, and COTC018 studies into Neo4J. | Kevin, Phil, Claire | Done. |
| 14 | ICDC | Define Authentication and Authorization Workflow using Fence | Amit | Partially done. |
| 15 | ICDC | Load NCATS data directly into Neo4J database | Kevin | Done. |
| 16 | ICDC | Impose constraints upon NCATS-related fields within ICDC Sample | Phil | Done. |
| 17 | ICDC | Automatically create visit records using Neo4J loader | Ming | Done. |
| 18 | ICDC | mapping all properties to BRIDG entities | Phil | On going - need to get document from Wendy and put on Box. |
| 19 | ICDC | Test newly-imposed constraints around NCATS-related fields | Phil | Next sprint - needed validation tool. |
| 20 | ICDC | ES Lint implementation | Ajay | In progress. |
| 21 | ICDC | Create sidebar presentation with Checkboxes | Ajay | Done. |
Retrospective Results
What went well
| Description | Author |
|---|---|
| Claire and I learned a ton more about what Pentaho can do. We were able to not only research if pentaho can do something, but we were able actually do it. We also worked so well together. | Kevin |
What could have gone better?
| Description | Author |
|---|---|
| It was a very productive sprint on our end. If I had to say something I would say points on the tickets. | Kevin |
Tickets
