2020-04-29 Meeting notes

Date

29 Apr 2020

Attendees

• Beyers, Matthew (NIH/NCI) [C]

Agenda

• Ongoing work  
  • Identifiers.org
  • Clustergram tutorial video
  • Workspace usability improvement 
  • Ability to add labels/annotations to files during upload time, that can later be used in the study creation
• Simplified study identifiers and external references - now in stage
• Support
• Portal and workspace related improvements  
• Next data sets / releases in pipeline
  
  • GDC and TCIA linking
  • Study description and embargo date?
  • Initial review of the metadata done
  • Study IDs reserved and sent
• HNSCC from CPTAC3  (May)
• Lung Cancer dataset of Academia Sinica - from ICPC, MacCoss - (Late May to early June)  
• LSCC from CPTAC3 (July)
• PDA from CPTAC3
• LUAD confirmatory from CPTAC3   
  
• APOLLO
• Georgetown lung dataset
• Organoid dataset from PNNL
• Other items
  • SevenBridges + Univ of Michigan - Philosopher integration with SBG
  • ISB-CGC - providing protein quant data through APIs
  • PRIDE SDRF format -  Sample and Data Relationship Format (SDRF) -  https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects
    • Annotate a CPTAC dataset for PRIDE 
    • Evaluate the new PRIDE format - 
  • CCDH
  • Sam Payne
• PDC Advisory committee
• ASMS and AACR virtual conferences
• External interactions
• User feedback

“ It is very comprehensive sources ”  - by a researcher from Duke Cancer Institute

• NCI Updates

Discussion items

Action items

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