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In your JSON file, if you want to update the metadata of the parent collection, also specify the metadata for the parent collection. Click the following link to view the syntax:

{
    "metadataEntries": [
        {
         "attribute": "project",
         "value": "my-project-name"
        },
        {
         "attribute": "notes",
         "value": "my-project-notes"
        }
    ],
    "createParentCollections": true,
    "parentCollectionsBulkMetadataEntries": 
        {
        "defaultCollectionMetadataEntries": 
            [{
            "attribute": "collection_type",
            "value": "Folder"
            }]
        }
}
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