1.0

None

Scott Bauer, Craig Stancl

Initial Draft for LexEVS v5.0

1.1

Nov 29, 2009

Marylyn King (NCI)

Updated related documents note regarding LexEVS v5.1

LexEVS 5.x Loader Guide

New document for 5.1 that contains all loader-related information from several 5.0 documents plus the new the Loader Framework extension information and RRF enhancements in 5.1.

owl:ontology

codingScheme

No comments

xml:lang

codingScheme.defaultLanguage

Default is 'en'

dc:title

codingScheme.formalName

No comments

rdfs:label

codingScheme.localName

No comments

URI

codingScheme.registeredName

No comments

owl:versionInfo

codingScheme.representsVersion

Default is 'UNASSIGNED'

dc:rights

codingScheme.copyright

No comments

owl:Class (Thing, Nothing)

concept

No comments

rdf:ID

concept.conceptCode

No comments

rdf:ID

concept.isActive

Hard coded as "Active"

rdf:ID

concept.isAnonymous

No comments

rsfs:label

concept.entityDescription

No comments

rdf:comment

concept.comment

No comments

rdfs:subClassOf

association

No comments

rdfs:subClassOf

association.id = "subClassOf"

No comments

rdfs:subClassOf

association.forwardName = "subClassOf"

No comments

rdfs:subClassOf

association.isFunctional = "false"

No comments

rdfs:subClassOf

association.isNavigable = "true"

No comments

rdfs:subClassOf

association.isReflexive="true"

No comments

rdfs:subClassOf

association.isSymmetric="false"

No comments

rdfs:subClassOf

association.isTransitive="true"

No comments

rdf:Property (ObjectProperty)

association

An association between two classes (hasDomain, hasRange)

rdf:Property (DatatypeProperty)

association
concept.conceptProperty

An association between one class (domain) and one asscoication (hasDomain and hasDataProperty). The conceptProperty defines the range.

rdfs:subPropertyOf

association

No comments

rdfs:subPropertyOf

association.id = "subPropertyOf"

No comments

rdfs:subPropertyOf

association.forwardName = "subPropertyOf"

No comments

rdfs:subPropertyOf

association.isFunctional = "false"

No comments

rdfs:subPropertyOf

association.isNavigable = "true"

No comments

rdfs:subPropertyOf

association.isReflexive="true"

No comments

rdfs:subPropertyOf

association.isSymmetric="false"

No comments

rdfs:subPropertyOf

association.isTransitive="true"

No comments

rdfs:domain

association

No comments

rdfs:domain

association.id = "hasDomain"

No comments

rdfs:domain

association.forwardName = "hasDomain"

No comments

rdfs:domain

association.isNavigable = "true"

No comments

rdfs:domain

association.isReflexive="true"

No comments

rdfs:domain

association.isSymmetric="false"

No comments

rdfs:domain

association.isTransitive="true"

No comments

rdfs:range

association

No comments

rdfs:range

association.id = "hasRange"

No comments

rdfs:range

association.forwardName = "hasRange"

No comments

rdfs:range

association.isNavigable = "true"

No comments

rdfs:range

association.isReflexive="false"

No comments

rdfs:range

association.isSymmetric="false"

No comments

rdfs:range

association.isTransitive="false"

No comments

Individual

association

A 'hasInstance' association is created. (ie. sourceId = Country, targetId = America)

Individual

association.id = "hasInstance"

No comments

owl:equivalentClass

association

No comments

owl:equivalentClass

association.id = "equivalentClass"

No comments

owl:equivalentClass

association.forwardName = "equivalentClass"

No comments

owl:equivalentClass

association.isFunctional = "false"

No comments

owl:equivalentClass

association.isNavigable = "true"

No comments

owl:equivalentClass

association.isReflexive="true"

No comments

owl:equivalentClass

association.isSymmetric="true"

No comments

owl:equivalentClass

association.isTransitive="true"

No comments

owl:equivalentClass

association.reverseName="equivalentClass"

No comments

owl:equivalentProperty

association

No comments

owl:equivalentProperty

association.id = "equivalentProperty"

No comments

owl:equivalentProperty

association.forwardName = "equivalentProperty"

No comments

owl:equivalentProperty

association.isFunctional = "false"

No comments

owl:equivalentProperty

association.isNavigable = "true"

No comments

owl:equivalentProperty

association.isReflexive="true"

No comments

owl:equivalentProperty

association.isSymmetric="true"

No comments

owl:equivalentProperty

association.isTransitive="true"

No comments

owl:equivalentProperty

association.reverseName="equivalentProperty"

No comments

owl:sameAs

association

No comments

owl:sameAs

association.id = "sameAs"

No comments

owl:sameAs

association.forwardName = "sameAs"

No comments

owl:sameAs

association.isFunctional = "false"

No comments

owl:sameAs

association.isNavigable = "true"

No comments

owl:sameAs

association.isReflexive="true"

No comments

owl:sameAs

association.isSymmetric="true"

No comments

owl:sameAs

association.isTransitive="true"

No comments

owl:sameAs

association.reverseName="sameAs"

No comments

differentFrom

association

No comments

differentFrom

association.id = "differentFrom"

No comments

differentFrom

association.forwardName = "differentFrom"

No comments

differentFrom

association.isFunctional = "false"

No comments

differentFrom

association.isNavigable = "true"

No comments

differentFrom

association.isReflexive="true"

No comments

differentFrom

association.isSymmetric="true"

No comments

differentFrom

association.isTransitive="true"

No comments

differentFrom

association.reverseName= "differentFrom"

No comments

owl:AllDifferent

association

No comments

owl:AllDifferent

association.id = "AllDifferent"

No comments

owl:AllDifferent

association.forwardName = "AllDifferent"

No comments

owl:AllDifferent

association.isFunctional = "false"

No comments

owl:AllDifferent

association.isNavigable = "true"

No comments

owl:AllDifferent

association.isReflexive="true"

No comments

owl:AllDifferent

association.isSymmetric="true"

No comments

owl:AllDifferent

association.isTransitive="true"

No comments

owl:AllDifferent

association.reverseName= "AllDifferent"

No comments

owl:inverseOf

association

No comments

owl:inverseOf

association.id = "inverseOf"

No comments

owl:inverseOf

association.forwardName = "inverseOf"

No comments

owl:inverseOf

association.isFunctional = "false"

No comments

owl:inverseOf

association.isNavigable = "true"

No comments

owl:inverseOf

association.isReflexive="true"

No comments

owl:inverseOf

association.isSymmetric="true"

No comments

owl:inverseOf

association.isTransitive="true"

No comments

owl:inverseOf

association.reverseName="inverseOf"

No comments

owl:TransitiveProperty

association.isTransitive

association property 'isTransitive'

owl:SymmetricProperty

association.isSymmetric

association property 'isSymmetric'

owl:InverseFunctionalProperty

association.isReverseFunctional

association property 'isReverseFunctional'

owl:FunctionalProperty

association.isFunctional

association property 'isFunctional'

owl:Restriction

concept

Create an anonymous concept for the restriction

owl:Restriction

concept.id

System generated

owl:Restriction

concept.isActive = true

No comments

owl:Restriction

concept.isAnonymous = true

Hard coded "True"

owl:onProperty

association.id

No comments

owl: allValuesFrom

concept.entityDescription

String of allValuesFrom values

owl: allValuesFrom

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl: allValuesFrom

concept.presentation.propertyName

Hard coded "textualPresentation"

owl: allValuesFrom

concept.presentation.isPreferred = true

Hard coded "true"

owl: allValuesFrom

concept.presentation.text

String of allValuesFrom values

owl: allValuesFrom

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl: allValuesFrom

concept.conceptProperty.propertyName = type

Hard coded "type"

owl: allValuesFrom

concept.conceptProperty.text = "owl:unionOf"

No comments

owl: someValuesFrom

concept.entityDescription

String of someValuesFrom values

owl: someValuesFrom

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl: someValuesFrom

concept.presentation.propertyName

Hard coded "textualPresentation"

owl: someValuesFrom

concept.presentation.isPreferred = true

Hard coded "true"

owl: someValuesFrom

concept.presentation.text

String of someValuesFrom values

owl: someValuesFrom

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl: someValuesFrom

concept.conceptProperty.propertyName = type

Hard coded "type"

owl: someValuesFrom

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:intersectionOf

concept.entityDescription

String of intersectionOf values (ie. Pizza and not VegetarianPizza)

owl:intersectionOf

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:intersectionOf

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:intersectionOf

concept.presentation.isPreferred = true

Hard coded "true"

owl:intersectionOf

concept.presentation.text

String of intersectionOf values (ie. Pizza and not VegetarianPizza)

owl:intersectionOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:intersectionOf

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:intersectionOf

concept.conceptProperty.text = "owl:intersectionOf"

No comments

UnionOf

concept.conceptProperty.text = "owl:unionOf"

No comments

owl:complementOf

association

association.id = "subClassOf"

owl:oneOf

concept.entityDescription

String of oneOf values

owl:oneOf

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:oneOf

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:oneOf

concept.presentation.isPreferred = true

Hard coded "true"

owl:oneOf

concept.presentation.text

String of oneOf values

owl:oneOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:oneOf

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:oneOf

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:hasValue

associationQualification.nameAndValueList.content

No comments

owl:minCardinality

concept.entityDescription

String of minCardinality Values (ie. (hasTopping min 3) and Pizza)

owl:minCardinality

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:minCardinality

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:minCardinality

concept.presentation.isPreferred = true

Hard coded "true"

owl:minCardinality

concept.presentation.text

String of minCardinality Value (ie. (hasTopping min 3) and Pizza)

owl:minCardinality

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:minCardinality

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:minCardinality

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:maxCardinality

concept.entityDescription

String of maxCardinality Values (ie. (hasTopping max 2) and Pizza)

owl:maxCardinality

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:maxCardinality

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:maxCardinality

concept.presentation.isPreferred = true

Hard coded "true"

owl:maxCardinality

concept.presentation.text

String of maxCardinality Values (ie. (hasTopping max 2) and Pizza)

owl:maxCardinality

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:maxCardinality

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:maxCardinality

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:cardinality

concept.entityDescription

String of cardinality Values

owl:cardinality

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:cardinality

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:cardinality

concept.presentation.isPreferred = true

Hard coded "true"

owl:cardinality

concept.presentation.text

String of cardinality Values

owl:cardinality

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:cardinality

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:cardinality

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:disjointWith

association

association.id = "disjointWith"

rdfs:label

Presentation

No comments

rdfs:label

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

rdfs:label

concept.presentation.propertyName = "textualPresentation"

Hard coded "textualPresentation"

rdfs:label

concept.presentation.isPreferred = true

Hard coded "true"

rdfs:label

concept.presentation.text

Value of rdfs:label

rdfs:comment

Comment

No comments

rdfs:comment

concept.comment.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

rdfs:comment

concept.comment.propertyName = "comment"

Hard coded "comment"

rdfs:comment

concept.presentation.text

Value of rdfs:comment

rdfs:seeAlso

conceptProperty

No comments

rdfs:isDefinedBy

conceptProperty

No comments

owl:versionInfo

codingScheme.representsVersion

No comments

priorVersion

Not mapped

No comments

backwardCompatibleWith

Not mapped

No comments

owl:incompatibleWith

association

No comments

owl:incompatibleWith

association.id = "incompatibleWith"

No comments

owl:incompatibleWith

association.forwardName = "incompatibleWith"

No comments

owl:incompatibleWith

association.isFunctional = "false"

No comments

owl:incompatibleWith

association.isNavigable = "true"

No comments

owl:incompatibleWith

association.isReflexive="true"

No comments

owl:incompatibleWith

association.isSymmetric="true"

No comments

owl:incompatibleWith

association.isTransitive="true"

No comments

owl:incompatibleWith

association.reverseName="incompatibleWith"

No comments

DeprecatedClass

Concept attribute setIsActive = false

Not mapped

DeprecatedProperty

—

Not mapped

owl:ontology

codingScheme

No comments

xml:lang

codingScheme.defaultLanguage

Default is 'en'

dc:title

codingScheme.formalName

No comments

rdfs:label

codingScheme.localName

No comments

URI

codingScheme.registeredName

No comments

owl:versionInfo

codingScheme.representsVersion

Default is 'UNASSIGNED'

dc:rights

codingScheme.copyright

No comments

owl:Class (Thing, Nothing)

concept

No comments

rdf:ID

concept.conceptCode

No comments

rdf:ID

concept.isActive

Hard coded as "Active"

rdf:ID

concept.isAnonymous

No comments

rdf:ID

concept.isDefined

No comments

rsfs:label

concept.entityDescription

No comments

rdf:comment

concept.comment

No comments

rdfs:subClassOf

association

No comments

rdfs:subClassOf

association.id = "subClassOf"

No comments

rdfs:subClassOf

association.forwardName = "subClassOf"

No comments

rdfs:subClassOf

association.isFunctional = "false"

No comments

rdfs:subClassOf

association.isNavigable = "true"

No comments

rdfs:subClassOf

association.isReflexive="true"

No comments

rdfs:subClassOf

association.isSymmetric="false"

No comments

rdfs:subClassOf

association.isTransitive="true"

No comments

rdf:Property (ObjectProperty)

association

An association between two classes (domain, range)

rdf:Property (DatatypeProperty)

association
concept.conceptProperty

An association between one class (domain) and one asscoication (domain and hasDataProperty). The conceptProperty defines the range.

rdfs:subPropertyOf

association

No comments

rdfs:subPropertyOf

association.id = "subPropertyOf"

No comments

rdfs:subPropertyOf

association.forwardName = "subPropertyOf"

No comments

rdfs:subPropertyOf

association.isFunctional = "false"

No comments

rdfs:subPropertyOf

association.isNavigable = "true"

No comments

rdfs:subPropertyOf

association.isReflexive="true"

No comments

rdfs:subPropertyOf

association.isSymmetric="false"

No comments

rdfs:subPropertyOf

association.isTransitive="true"

No comments

rdfs:domain

association

No comments

rdfs:domain

association.id = "domain"

No comments

rdfs:domain

association.forwardName = "domain"

No comments

rdfs:domain

association.isNavigable = "true"

No comments

rdfs:domain

association.isReflexive="false"

No comments

rdfs:domain

association.isSymmetric="false"

No comments

rdfs:domain

association.isTransitive="true"

No comments

rdfs:range

association

No comments

rdfs:domain

association.id = "range"

No comments

rdfs:domain

association.forwardName = "range"

No comments

rdfs:domain

association.isNavigable = "true"

No comments

rdfs:domain

association.isReflexive="false"

No comments

rdfs:domain

association.isSymmetric="false"

No comments

rdfs:domain

association.isTransitive="false"

No comments

Individual

association

An 'instance' association is created. (ie. sourceId = Country, targetId = America)

Individual

association.id = "instance"

No comments

owl:equivalentClass

association

No comments

owl:equivalentClass

association.id = "equivalentClass"

No comments

owl:equivalentClass

association.forwardName = "equivalentClass"

No comments

owl:equivalentClass

association.isFunctional = "false"

No comments

owl:equivalentClass

association.isNavigable = "true"

No comments

owl:equivalentClass

association.isReflexive="true"

No comments

owl:equivalentClass

association.isSymmetric="true"

No comments

owl:equivalentClass

association.isTransitive="true"

No comments

owl:equivalentClass

association.reverseName="equivalentClass"

No comments

owl:equivalentProperty

association

No comments

owl:equivalentProperty

association.id = "equivalentProperty"

No comments

owl:equivalentProperty

association.forwardName = "equivalentProperty"

No comments

owl:equivalentProperty

association.isFunctional = "false"

No comments

owl:equivalentProperty

association.isNavigable = "true"

No comments

owl:equivalentProperty

association.isReflexive="true"

No comments

owl:equivalentProperty

association.isSymmetric="true"

No comments

owl:equivalentProperty

association.isTransitive="true"

No comments

owl:equivalentProperty

association.reverseName="equivalentProperty"

No comments

owl:sameAs

association

No comments

owl:sameAs

association.id = "sameAs"

No comments

owl:sameAs

association.forwardName = "sameAs"

No comments

owl:sameAs

association.isFunctional = "false"

No comments

owl:sameAs

association.isNavigable = "true"

No comments

owl:sameAs

association.isReflexive="true"

No comments

owl:sameAs

association.isSymmetric="true"

No comments

owl:sameAs

association.isTransitive="true"

No comments

owl:sameAs

association.reverseName="sameAs"

No comments

differentFrom

association

No comments

differentFrom

association.id = "differentFrom"

No comments

differentFrom

association.forwardName = "differentFrom"

No comments

differentFrom

association.isFunctional = "false"

No comments

differentFrom

association.isNavigable = "true"

No comments

differentFrom

association.isReflexive="true"

No comments

differentFrom

association.isSymmetric="true"

No comments

differentFrom

association.isTransitive="true"

No comments

differentFrom

association.reverseName= "differentFrom"

No comments

owl:AllDifferent

association

No comments

owl:AllDifferent

association.id = "AllDifferent"

No comments

owl:AllDifferent

association.forwardName = "AllDifferent"

No comments

owl:AllDifferent

association.isFunctional = "false"

No comments

owl:AllDifferent

association.isNavigable = "true"

No comments

owl:AllDifferent

association.isReflexive="true"

No comments

owl:AllDifferent

association.isSymmetric="true"

No comments

owl:AllDifferent

association.isTransitive="true"

No comments

owl:AllDifferent

association.reverseName= "AllDifferent"

No comments

owl:inverseOf

association

No comments

owl:inverseOf

association.id = "inverseOf"

No comments

owl:inverseOf

association.forwardName = "inverseOf"

No comments

owl:inverseOf

association.isFunctional = "false"

No comments

owl:inverseOf

association.isNavigable = "true"

No comments

owl:inverseOf

association.isReflexive="true"

No comments

owl:inverseOf

association.isSymmetric="true"

No comments

owl:inverseOf

association.isTransitive="true"

No comments

owl:inverseOf

association.reverseName="inverseOf"

No comments

owl:TransitiveProperty

association.isTransitive

association property 'isTransitive'

owl:SymmetricProperty

association.isSymmetric

association property 'isSymmetric'

owl:InverseFunctionalProperty

association.isReverseFunctional

association property 'isReverseFunctional'

owl:FunctionalProperty

association.isFunctional

association property 'isFunctional'

owl:Restriction

concept

Create an anonymous concept for the restriction

owl:Restriction

concept.id

System generated

owl:Restriction

concept.isActive = true

No comments

owl:Restriction

concept.isAnonymous = true

Hard coded "True"

owl:onProperty

association.id

No comments

owl: allValuesFrom

concept.entityDescription

String of allValuesFrom values

owl: allValuesFrom

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl: allValuesFrom

concept.presentation.propertyName

Hard coded "textualPresentation"

owl: allValuesFrom

concept.presentation.isPreferred = true

Hard coded "true"

owl: allValuesFrom

concept.presentation.text

String of allValuesFrom values

owl: allValuesFrom

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl: allValuesFrom

concept.conceptProperty.propertyName = type

Hard coded "type"

owl: allValuesFrom

concept.conceptProperty.text = "owl:unionOf"

No comments

owl: someValuesFrom

concept.entityDescription

String of someValuesFrom values

owl: someValuesFrom

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl: someValuesFrom

concept.presentation.propertyName

Hard coded "textualPresentation"

owl: someValuesFrom

concept.presentation.isPreferred = true

Hard coded "true"

owl: someValuesFrom

concept.presentation.text

String of someValuesFrom values

owl: someValuesFrom

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl: someValuesFrom

concept.conceptProperty.propertyName = type

Hard coded "type"

owl: someValuesFrom

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:intersectionOf

concept.entityDescription

String of intersectionOf values (ie. Pizza and not VegetarianPizza)

owl:intersectionOf

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:intersectionOf

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:intersectionOf

concept.presentation.isPreferred = true

Hard coded "true"

owl:intersectionOf

concept.presentation.text

String of intersectionOf values (ie. Pizza and not VegetarianPizza)

owl:intersectionOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:intersectionOf

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:intersectionOf

concept.conceptProperty.text = "owl:intersectionOf"

No comments

UnionOf

concept.conceptProperty.text = "owl:unionOf"

No comments

owl:complementOf

association

association.id = "subClassOf"

owl:oneOf

concept.entityDescription

String of oneOf values

owl:oneOf

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:oneOf

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:oneOf

concept.presentation.isPreferred = true

Hard coded "true"

owl:oneOf

concept.presentation.text

String of oneOf values

owl:oneOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:oneOf

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:oneOf

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:hasValue

associationQualification.nameAndValueList.content

No comments

owl:minCardinality

concept.entityDescription

String of minCardinality Values (ie. (hasTopping min 3) and Pizza)

owl:minCardinality

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:minCardinality

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:minCardinality

concept.presentation.isPreferred = true

Hard coded "true"

owl:minCardinality

concept.presentation.text

String of minCardinality Value (ie. (hasTopping min 3) and Pizza)

owl:minCardinality

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:minCardinality

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:minCardinality

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:maxCardinality

concept.entityDescription

String of maxCardinality Values (ie. (hasTopping max 2) and Pizza)

owl:maxCardinality

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:maxCardinality

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:maxCardinality

concept.presentation.isPreferred = true

Hard coded "true"

owl:maxCardinality

concept.presentation.text

String of maxCardinality Values (ie. (hasTopping max 2) and Pizza)

owl:maxCardinality

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:maxCardinality

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:maxCardinality

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:cardinality

concept.entityDescription

String of cardinality Values

owl:cardinality

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:cardinality

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:cardinality

concept.presentation.isPreferred = true

Hard coded "true"

owl:cardinality

concept.presentation.text

String of cardinality Values

owl:cardinality

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:cardinality

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:cardinality

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:disjointWith

association

association.id = "disjointWith"

rdfs:label

Presentation

No comments

rdfs:label

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

rdfs:label

concept.presentation.propertyName = "textualPresentation"

Hard coded "textualPresentation"

rdfs:label

concept.presentation.isPreferred = true

Hard coded "true"

rdfs:label

concept.presentation.text

Value of rdfs:label

rdfs:comment

Comment

No comments

rdfs:comment

concept.comment.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

rdfs:comment

concept.comment.propertyName = "comment"

Hard coded "comment"

rdfs:comment

concept.presentation.text

Value of rdfs:comment

rdfs:seeAlso

conceptProperty

No comments

rdfs:isDefinedBy

conceptProperty

No comments

owl:versionInfo

codingScheme.representsVersion

No comments

priorVersion

Not mapped

No comments

backwardCompatibleWith

Not mapped

No comments

owl:incompatibleWith

association

No comments

owl:incompatibleWith

association.id = "incompatibleWith"

No comments

owl:incompatibleWith

association.forwardName = "incompatibleWith"

No comments

owl:incompatibleWith

association.isFunctional = "false"

No comments

owl:incompatibleWith

association.isNavigable = "true"

No comments

owl:incompatibleWith

association.isReflexive="true"

No comments

owl:incompatibleWith

association.isSymmetric="true"

No comments

owl:incompatibleWith

association.isTransitive="true"

No comments

owl:incompatibleWith

association.reverseName="incompatibleWith"

No comments

DeprecatedClass

Concept attribute setIsActive = false

Not mapped

DeprecatedProperty

—

Not mapped

owl:ontology

codingScheme

Hard coded "NCI_Thesaurus"

xml:lang

codingScheme.defaultLanguage

Hard coded "en"

dc:title

codingScheme.formalName

Hard coded "NCI Thesaurus"

rdfs:label

codingScheme.localName

Hard coded "NCI_Thesaurus"

rdfs:label

Hard coded "40010"

No comments

rdfs:label

Hard coded "urn:oid:2.16.840.1.113883.3.26.1.1"

No comments

URI

codingScheme.registeredName

Hard coded "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#"

owl:versionInfo

codingScheme.representsVersion

No comments

dc:rights

codingScheme.copyright

Read from hard coded "Terms.txt" file .

rdfs:comment

codingScheme.entityDescription

No comments

rdfs:comment

codingScheme.isNative

Hard coded "true"

owl:Class (Thing, Nothing)

concept

No comments

code

concept.id

No comments

code

concept.isActive

Hard coded as "true" unless class "owl:DeprecatedClass", then 'false'

code

concept.isAnonymous

No comments

rsfs:label

concept.entityDescription

No comments

rdf:comment

concept.comment

No comments

rdf:comment

conceptProperty

Indicate whether the concept is primative (has no equavalent classes)

rdf:comment

concept.conceptProperty.propertyName

Hard coded as "primitive"

rdf:comment

concept.conceptProperty.text

"true"

rdf:comment

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

rdf:comment

presentation

Provide default presentation to match concept entity description if not provided as property

rdf:comment

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

rdf:comment

concept.presentation.propertyName

Hard coded "NCI_Preferred_Term"

rdfs:label

concept.presentation.text

concept.entityDescription

rdfs:label

conceptProperty

Property with designated concept name label (per NCI requirements and used in codeToName/nameToCode lookup).

rdfs:label

concept.conceptProperty.propertyName

Hard coded as "CONCEPT_NAME"

rdfs:label

concept.conceptProperty.text

concept.entityDescription

rdfs:label

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

rdfs:label

relation

Top-level container for associations (non-inheritable, non-defining relationships between concepts.

rdfs:label

relations.dc

Hard coded as "associations"

rdfs:label

relations.isNative

Hard coded as "true"

rdfs:label

relations.entityDescription

Hard coded as "Non-inheritable non-defining relations."

rdfs:label

relation

Top-level container for roles (inheritable relationships)

rdfs:label

relations.dc

Hard coded as "roles"

rdfs:label

relations.isNative

Hard coded as "true"

rdfs:label

relations.entityDescription

Hard coded as "Inheritable/defining relations."

rdfs:subClassOf

association

Association for subtype hierarchy.

rdfs:subClassOf

association.id = "hasSubtype"

No comments

rdfs:subClassOf

association.forwardName = "hasSubtype"

No comments

rdfs:subClassOf

association.reverseName = "isA"

No comments

rdfs:subClassOf

association.isNavigable = "true"

Hard coded as "true"

rdfs:subClassOf

Hard coded as "true"

No comments

rdfs:subClassOf

Hard coded as "false"

No comments

rdfs:subClassOf

Hard coded as "true"

No comments

hasElement

association

Association used to register component classes as elements of anonymous node representations.

hasElement

association.id = "hasElement"

No comments

hasElement

association.forwardName = "hasElement"

No comments

hasElement

association.isNavigable = "true"

Hard coded as "true"

hasElement

Hard coded as "false"

No comments

hasElement

Hard coded as "true"

No comments

rdfs:domain

association

Association for role_has_domain relations

rdfs:domain

association.id = "Role_Has_Domain"

No comments

rdfs:domain

association.forwardName = "roleHasDomain"

No comments

rdfs:domain

association.reverseName = "kindIsDomainOf"

No comments

rdfs:domain

association.isNavigable = "true"

Hard coded as "true"

rdfs:domain

Hard coded as "false"

No comments

rdfs:domain

Hard coded as "false"

No comments

rdfs:domain

Hard coded as "true"

No comments

rdfs:range

association

Association for range relations

rdfs:range

association.id = "Role_Has_Range"

No comments

rdfs:range

association.forwardName = "roleHasRange"

No comments

rdfs:range

association.reverseName = "kindIsRangeOf"

No comments

rdfs:range

association.isNavigable = "true"

Hard coded as "true"

rdfs:range

association.isReflexive="false"

Hard coded as "false"

rdfs:range

association.isSymmetric="false"

Hard coded as "false"

rdfs:range

association.isTransitive="false"

Hard coded as "false"

rdf:Property (ObjectProperty)

association

An association between two classes (hasDomain, hasRange)

rdfs:subPropertyOf

—

Not mapped

owl:equivalentClass

association

Association for equivalent class.

owl:equivalentClass

association.id = "equivalentClass"

No comments

owl:equivalentClass

association.forwardName = "equivalentClass"

No comments

owl:equivalentClass

association.reverseName = "equivalentClass"

No comments

owl:equivalentClass

association.isNavigable = "true"

Hard coded as "true"

owl:equivalentClass

association.isReflexive="true"

Hard coded as "true"

owl:equivalentClass

association.isSymmetric="true"

Hard coded as "true"

owl:equivalentClass

association.isTransitive="true"

Hard coded as "true"

owl:inverseOf

association

No comments

owl:inverseOf

association.id = "inverseOf"

No comments

owl:inverseOf

association.forwardName = "inverseOf"

No comments

owl:inverseOf

association.isFunctional = "false"

No comments

owl:inverseOf

association.isNavigable = "true"

No comments

owl:inverseOf

association.isReflexive="true"

No comments

owl:inverseOf

association.isSymmetric="true"

No comments

owl:inverseOf

association.isTransitive="true"

No comments

owl:inverseOf

association.reverseName="inverseOf"

No comments

owl:TransitiveProperty

association.isTransitive

association property 'isTransitive'

owl:SymmetricProperty

association.isSymmetric

association property 'isSymmetric'

owl:InverseFunctionalProperty

association.isReverseFunctional

association property 'isReverseFunctional'

owl:FunctionalProperty

association.isFunctional

association property 'isFunctional'

owl:Restriction

concept

Anonymous concept created.

owl:Restriction

concept.entityDescription = "RestrictionOn: " + association name

Concatination of "Restriction On: " and assocation name

owl:Restriction

concept.isAnonymous = true

No comments

owl: allValuesFrom

associationQualification.association.Qualifier = "AllValuesFrom"

No comments

owl: someValuesFrom

associationQualification.association.Qualifier = "someValuesFrom"

No comments

owl:intersectionOf

concept.entityDescription

Concatination of "Restriction On: " and assocation name

owl:intersectionOf

concept.isAnonymous = true

No comments

owl:intersectionOf

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:intersectionOf

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:intersectionOf

concept.presentation.isPreferred = true

Hard coded "true"

owl:intersectionOf

concept.presentation.text

Set to concept.entityDescription

owl:intersectionOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:intersectionOf

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:intersectionOf

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:unionOf

concept.entityDescription

Concatination of "Restriction On: " and assocation name

owl:unionOf

concept.isAnonymous = true

No comments

owl:unionOf

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:unionOf

concept.presentation.propertyName

Hard coded "textualPresentation"

owl:unionOf

concept.presentation.isPreferred = true

Hard coded "true"

owl:unionOf

concept.presentation.text

Set to concept.entityDescription

owl:unionOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:unionOf

concept.conceptProperty.propertyName = type

Hard coded "type"

owl:unionOf

concept.conceptProperty.text = "owl:unionOf"

No comments

owl:oneOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:oneOf

concept.conceptProperty.propertyName = "owl:oneOf"

Hard coded "owl:oneOf"

owl:oneOf

concept.conceptProperty.text

String of oneOf values

rdfs:comment

Comment

No comments

rdfs:comment

concept.comment.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

rdfs:comment

concept.comment.propertyName = "comment"

Hard coded "comment"

rdfs:comment

concept.presentation.text

Value of rdfs:comment

rdfs:seeAlso

conceptProperty

No comments

rdfs:isDefinedBy

conceptProperty

No comments

owl:versionInfo

codingScheme.representsVersion

No comments

priorVersion

–

Not mapped

backwardCompatibleWith

–

Not mapped

DeprecatedClass

–

Not mapped

DeprecatedProperty

–

Not mapped

go-term

x

NA

NA

NA

None

propertyValue

None

go-id

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

go-source

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

source-date

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

term-name

x

NA

NA

NA

None

propertyValue

None

term-group

NA

NA

x

NA

None

representationalForm

property attribute

term-source

NA

x

NA

NA

None

attributeValue

source

def-source

NA

x

NA

NA

None

attributeValue

source

def-definition

x

NA

NA

NA

propertyValue

definition

None

Definition_Review_Date

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

Definition_Reviewer_Name

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

None

None

None

NA

codingScheme.representsVersion

No comments

None

None

None

NA

codingScheme.codingScheme

Hard coded in java file as "UMLS_SemNet"

None

None

None

NA

codingScheme.formalName

Hard coded in java file as "UMLS Semantic Network"

None

None

None

NA

codingScheme.defaultLanguage

Hard coded in java file as "en"

None

None

None

NA

codingScheme.approxNumConcepts

Hard coded in java file as

None

None

None

NA

codingScheme.entityDescription

hard coded in java file as "The UMLS Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project. The network provides a consistent Hategorization of all concepts represented in the UMLS Metathesaurus."

license.txt

None

None

NA

codingScheme.copyright

Read from license.txt file or hard coded reference in java file

license.txt

None

None

NA

codingScheme.registeredName

Hard coded in java file as "urn:lsid:nlm.nih.gov:semnet"

license.txt

None

None

NA

codingScheme.concepts.dc

Hard coded in java file as "concepts"

license.txt

None

None

NA

codingScheme.relations.dc

Hard coded in java file as "relations"

license.txt

None

None

NA

codingScheme.mappings.dc

Hard coded in java file as "mappings"

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

Hard coded in java file as "UMLS_SemNet"

license.txt

None

None

NA

codingScheme.localNameList

No comments 

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

codingScheme.source

No comments

license.txt

None

None

NA

codingScheme.source.content

No comments

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

mappings.supportedFormat

No comments

license.txt

None

None

NA

mappings.supportedFormat.localId

Hard coded in java file as "text/plain"

license.txt

None

None

NA

mappings.supportedFormat.urn

Hard coded in java file as "urn:oid:2.16.840.1.113883.6.10:text_plain"

license.txt

None

None

NA

mappings.supportedAssociation

No comments

SRDEF

RL

None

NA

mappings.supportedAssociation.localId

No comments

SRDEF

RL

None

NA

mappings.supportedContext

No comments

SRDEF

RL

None

NA

mappings.supportedSource

No comments

SRDEF

RL

None

NA

mappings.supportedSource.localId

Hard coded in java file as "NLM"

SRDEF

RL

None

NA

mappings.supportedSource.urn

Hard coded in java file as "urn:lsid:nlm.nih.gov"

SRDEF

RL

None

NA

mappings.supportedHierarchy

No comments

SRDEF

RL

None

NA

mappings.supportedHierarchy.localId

Hard coded in java file as "is_a"

SRDEF

RL

None

NA

mappings.supportedHierarchy.isForwardNavigable

Hard coded as "true"

SRDEF

RL

None

NA

mappings.supportedHierarchy.rootCode

Hard coded as "@"

SRDEF

RL

None

NA

mappings.supportedHierarchy.associationList

Hard coded in java file as "hasSubtype"

SRDEF

RL

None

NA

mappings.supportedAssociationQualifier

No comments

SRFLD

COL

None

NA

mappings.supportedProperty

No comments

SRFLD

COL

None

NA

mappings.supportedProperty.localId

If SRDEF appears in the FIL column then this is treated a potential supported property and is entered in supported properties as such.

SRFLD

COL

None

NA

mappings.supportedProperty.urn

Hard coded in java file as ""

SRFLD

COL

None

NA

mappings.supportedLanguage

No comments

SRFLD

COL

None

NA

mappings.supportedLanguage.localId

Hard coded in java file as "en"

SRFLD

COL

None

NA

mappings.supportedLanguage.urn

Hard coded in java file as "urn:oid:2.16.840.1.113883.6.84:en"

SRFLD

COL

None

NA

mappings.supportedCodingScheme

No comments

SRFLD

COL

None

NA

mappings.supportedCodingScheme.localId

Hard coded in java file as "UMLS_SemNet"

SRFLD

COL

None

NA

mappings.supportedCodingScheme.urn

Hard coded in java file as "urn:lsid:nlm.nih.gov:semnet"

SRFLD

COL

None

NA

mappings.supportedRepresentationalForm

No comments

SRFLD

COL

None

NA

mappings.supportedConceptStatus

No comments

SRFLD

COL

None

NA

mappings.supportedPropertyLink

No comments

SRFLD

COL

None

NA

mappings.supportedPropertyQualifier

No comments

SRFLD

COL

None

NA

mappings.supportedDataType

No comments

SRDEF

UI

None

NA

concept.id(inherited from Entity)

No comments 

SRDEF

STY/RL

None

NA

concept.enitityDescription(inheritance path Entity->versionableAndDescribable)

No comments

SRDEF

STY/RL

None

NA

concept.conceptProperty

No comments

SRDEF

NH

None

NA

concept.conceptProperty.text.content

No comments

SRDEF

NH 

None

NA

concept.conceptProperty.format

Hard coded in java file as "text/plain"

SRDEF

NH

None

NA

concept.conceptProperty.propertyName

Hard coded in java file as "NH"

SRDEF

NH

None

NA

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRDEF

NH

None

NA

concept.presentation

No comments

SRDEF

NH

None

NA

concept.presentation.propertyName (inherited from Property)

Hard coded in java file as "STY/RL" or "ABR"

SRDEF

NH

None

NA

concept.presentation.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRDEF

STY/RL, ABR

None

NA

concept.presentation.text.content

No comments

SRDEF

STY/RL, ABR

None

NA

concept.presentation.format

Hard coded in java file as "text/plain"

SRDEF

STY/RL, ABR

None

NA

concept.presentation.isPreferred

Hard coded in java file as true.

SRDEF

STY/RL, ABR

None

NA

concept.definition.propertyName (inherited from Property)

Hard coded in java file as "DEF"

SRDEF

STY/RL, ABR

None

NA

concept.definition.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRDEF

DEF

None

NA

concept.definition.text.content

No comments

SRDEF

DEF

None

NA

concept.definition.format

Hard coded in java file as "text/plain"

SRDEF

DEF

None

NA

concept.definition.isPreferred

Hard coded in java file as true.

SRDEF

DEF

None

NA

concept.comment

No comments

SRDEF

EX

None

NA

concept.comment.propertyName (inherited from Property)

Hard coded in java file as "EX"

SRDEF

EX

None

NA

concept.comment.text.content

No comments

SRDEF

EX

None

NA

concept.comment.format

Hard coded in java file as "text/plain"

SRDEF

EX

None

NA

concept.comment.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRDEF

EX

None

NA

concept.instruction

No comments

SRDEF

EX

None

NA

concept.instruction.propertyName (inherited from Property)

Hard coded in java file as "UN"

SRDEF

UN

None

NA

concept.instruction.text.content

No comments

SRDEF

UN 

None

NA

concept.instruction.format

Hard coded in java file as "text/plain"

SRDEF

UN

None

NA

concept.instruction.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRSTR

RL

None

NA

association.id (inherited from Entity)

In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed

SRSTR

RL

None

NA

association.isTransitive

Hard coded to true if the value of RL is "isa"

SRSTR

RL

None

NA

association.forwardName

Reversed when value of RL is "isa"

SRSTR

STY/RL

None

NA

associationInstance.sourceId

Reversed when value of RL is "isa"

SRSTR

STY/RL

None

NA

associationTarget.targetId

No comments

SRDEF

RIN

None

NA

association.reverseName

No comments

SRDEF

DEF

None

NA

association.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable)

When SRDEF value RT is "RL"

SRSTRE1

UI/STY(first argument)

None

NA

associationInstance.sourceId

Reversed when value of RL is "isa"

SRSTRE1

UI/STY(2nd argument)

None

NA

associationTarget.targetId

Reversed when value of RL is "isa"

MRSAB.RRF

SVER

Release date or version number of a source

NA

codingScheme.representsVersion

No comments

MRSAB.RRF

SSN

Source short name

NA

codingScheme.codingScheme

No comments

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.formalName

No comments

MRSAB.RRF

LAT

Language of Term(s)

NA

codingScheme.defaultLanguage

No comments

MRSAB.RRF

TRF

Term frequency for a source

NA

codingScheme.approxNumConcepts

No comments

MRSAB.RRF

SCIT

Source citation

NA

codingScheme.entityDescription

Inherits entityDescription from versionableAndDescribable

MRSAB.RRF

SCC

Content contact info for a source

NA

codingScheme.copyright

No comments

MRSAB.RRF

SCC

Content contact info for a source

NA

codingScheme.registeredName

Pulled from iso mapping configuration file using method getISOString(RSAB from MRSAB.RRF)

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.representsVersion

Where Dockey = "RELEASE" and value = "umls.release.name"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.codingScheme

Hard coded in java file as "NCI MetaThesaurus"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.formalName

Hard coded in java file as "NCI MetaThesaurus"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.defaultLanguage

Hard coded in java file as "ENG"

MRCONSO.RRF

None

None

x

codingScheme.approxNumConcepts

Count of CODE value in MRCONSO.RRF

MRCONSO.RRF

None

None

x

codingScheme.entityDescription

Hard coded in java file as "NCI MetaThesaurus loaded from RRF files."

MRCONSO.RRF

None

None

x

codingScheme.copyright

Hard coded in java file as "Some material in the NCI Metathesaurus is from copyrighted sources of the respective copyright claimants. All sources appearing in the NCI Metathesaurus are licensed or authorized for NCI use. Users of the NCI Metathesaurus are responsible for compliance with the terms of these licenses and with any copyright restrictions and are referred to NCI Center of Bioinformatics for license terms and to the copyright notices appearing in the original sources, all of which are obtainable online by reference at http://ncimeta.nci.nih.gov/."

MRCONSO.RRF

None

None

NA

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.localNameList.

No comments

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.localNameList.

Pulled from iso mapping configuration file using method getISOString(RSAB from MRSAB.RRF)

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.source

Hard coded as constant in java file as "source"

MRDOC.RRF

EXPL

Detailed explanation

NA

codingScheme.source.content

String concatenation of "UMLS-" and value of EXPL

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "NCI Thesaurus"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "NCI_Thesaurus"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "10001"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "source"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "RRF Files"

MRDOC.RRF

EXPL

Detailed explanation

NA

mappings.supportedFormat

Hard coded as constant in java file as "Format"

MRDOC.RRF

EXPL

Detailed explanation

NA

mappings.supportedFormat.localId

Hard coded as one of several constants in a java file

MRDOC.RRF

EXPL

Detailed explanation

NA

mappings.supportedAssociation

Hard coded as constant in java file as "Association"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedAssociation.localId

No comments

MRREL.RRF 

REL, RELA 

Relationship, Relationship attribute 

NA

mappings.supportedContext

Hard coded as constant in java file as "Context" May not be used in individual RRF load

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedSource

Hard coded as constant in java file as "Source" May not be used in individual RRF load

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedHierarchy

Hard coded as constant in java file as "Hierarchy"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedAssociationQualifier

Hard coded as constant in java file as "AssociationQualifier"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedProperty

Hard coded as constant in java file as "Property"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedLanguage

Hard coded as constant in java file as "Language"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedCodingScheme

Hard coded as constant in java file as "CodingScheme"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedRepresentationalForm

Hard coded as constant in java file as "RepresentationalForm"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedConceptStatus

Hard coded as constant in java file as "ConceptStatus"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedPropertyLink

Hard coded as constant in java file as "PropertyLink"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedPropertyQualifier

Hard coded as constant in java file as "PropertyQualifier"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedDataType

Hard coded as constant in java file as "DataType"

MRCONSO.RRF

CODE

Unique Identifier or code for string in source

NA

concept.conceptCode

No comments

MRCONSO.RRF

CUI

Unique identifier for concept

x

concept.conceptCode

No comments

MRCONSO.RRF

CUI

Unique identifier for concept 

NA

concept.isActive

Hard coded in parameter as true.

MRCONSO.RRF

CUI

Unique identifier for concept

NA

concept.conceptStatus

Hard coded as constant in java file as "Active"

MRCONSO.RRF

CUI

Unique identifier for concept

NA

concept.isAnonymous

Hard coded in parameter as false.

MRCONSO.RRF

STR

String

NA

concept.entityDescription

Non comments

MRCONSO.RRF

STR 

String 

NA

concept.conceptProperty.Format

Hard coded as constant in java file as "text/plain" or null

MRCONSO.RRF

STR

String

NA

concept.conceptProperty.propertyName

May be hard coded as constant in java file as one of several properties.

MRCONSO.RRF

STR

String

NA

concept.conceptProperty.usageContext

No comments

MRCONSO.RRF

STR

String

NA

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

MRCONSO.RRF

STR

String

NA

concept.presentation.propertyId

Generated value for property textual presentation using "T" concatenated with a steadily incremented numerical value.

MRCONSO.RRF

STR

String

NA

concept.comment.propertyId

Generated value for property comment using "C" concatenated with a steadily incremented numerical value.

MRCONSO.RRF

STR

String

NA

concept.definition.propertyId

Generated value for property definition using "D" concatenated with a steadily incremented numerical value.

MRCONSO.RRF

STR

String

NA

concept.instruction.propertyId

Generated value for property instruction using "I" concatenated with a steadily incremented numerical value.

MRCONSO.RRF

CUI

Unique identifier for concept

NA

concept.conceptProperty.text.content.

No comments

MRCONSO.RRF

CUI

Unique identifier for concept 

NA

concept.conceptProperty.propertyId

Generated value for property using "CUI" concatenated with a steadily incremented numerical value.

MRCONSO.RRF

CUI

Unique identifier for concept

NA

concept.conceptProperty.propertyName

Hard coded as constant in java file as "UMLS_CUI"

MRCONSO.RRF

CUI

Unique identifier for concept

NA

concept.conceptProperty.propertyType

Hard coded as constant in java file as "property"

MRCONSO.RRF

CUI

Unique identifier for concept

NA

concept.conceptProperty.format

Left as null

MRSTY.RRF

STY

Semantic type

NA

concept.conceptProperty.text.content

No comments

MRSTY.RRF

STY

Semantic type

NA

concept.conceptProperty.propertyId

Generated value for property using "SemType" concatenated with a steadily incremented numerical value.

MRSTY.RRF

STY

Semantic type

NA

concept.conceptProperty.propertyName

Hard coded as constant in java file as "Semantic_Type"

MRSTY.RRF

STY

Semantic type

NA

concept.conceptProperty.propertyType

Hard coded as constant in java file as "property"

MRSTY.RRF

STY

Semantic type

NA

concept.conceptProperty.format

Hard coded as constant in java file as "text/plain"

MRCONSO.RRF

LAT

Language of Term(s)

NA

concept.conceptProperty.language

Logic of code simply selects the first definition in the source as the preferred source

MRCONSO.RRF

TS

Term status

NA

concept.presentation.isPreferred

One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.

MRCONSO.RRF

STT

String type

NA

concept.presentation.isPreferred

One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.

MRCONSO.RRF

ISPREF

Indicates whether AUI is preferred

NA

concept.presentation.isPreferred

One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.

MRRANK.RRF

RANK

Termgroup ranking

NA

concept.presentation.isPreferred

One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.

MRRANK.RRF

RANK

Termgroup ranking

NA

concept.presentation.isPreferred

No comments

MRDEF.RRF

DEF

Definition

NA

concept.definition.text.content

No comments

NA

concept.definition.isPreferred

Logic of code simply selects the first definition in the source as the preferred source

MRSAT.RRF

ATN

Attribute name

NA

concept.conceptProperty.propertyType

Translated to a LexGrid property type. For values AN, CX, HN this property is typed as a "COMMENT" in LexGrid. For value EV this property is typed "PRESENTATION" This only occurs when the STYPE points to the CODE, SCUI or SDUI columns in MRREL.RRF or MRCONSO.RRF. If the STYPE points to SAUI then the values are loaded as property qualifiers.

MRSAT.RRF

ATV

Attribute value

NA

concept.conceptProperty.propertyValue

No comments

MRSAT.RRF

ATN

Attribute name

NA

concept.conceptProperty.propertyQualifier.propertyQualifierId

If the STYPE points to SAUI then the value is loaded as a property qualifier attribute

MRSAT.RRF

ATV

Attribute value

NA

concept.conceptProperty.propertyQualifier.content

If the STYPE points to SAUI then the value is loaded as a property qualifier attribute

MRCONSO.RRF

SAB

None

x

concept.conceptProperty.source.content

No comments

MRCONSO.RRF

SAB

None

x

concept.conceptProperty.propertyQualifier.propertyQualifierId

Hard coded as constant in java file as "source-code"

MRCONSO.RRF

CODE

None

x

concept.conceptProperty.propertyQualifier.content

No comments

MRCONSO.RRF

CODE

None

x

concept.conceptProperty.propertyQualifier.propertyQualifierId

Hard coded as constant in java file as "AUI"

MRCONSO.RRF

AUI

None

x

concept.conceptProperty.propertyQualifier.content

No comments

MRCONSO.RRF

AUI

None

NA

concept.presentation.representationalForm

When ATN value is EV this presentation will be given a representationalForm of "Abbrev."

MRCONSO.RRF

TTY

Term type in source

NA

concept.presentation.representationForm

When TTY value is FN then representationalForm is represented as "Full Form" Otherwise the representationalForm is the same as the TTY source (i.e. if TTY is PT then representationalForm is PT.) PT is one of the preferred presentations.

MRCONSO.RRF

TTY

Term type in source

NA

concept.conceptProperty.propertyQualifier.propertyQualifierId

Hard coded as "HCD"

MRHIER.RRF

HCD

Source asserted hierarchical number or code for this atom in this context

NA

concept.conceptProperty.propertyQualifier.content

This propertyQualifier is present when the HCD is populated in the the MRHIER file. The corresponding code and property for concept or code is qualified as a code or concept with a context derived heirarchy.

MRREL.RRF

CUI1

Unique identifier for first concept

NA

None

No comments

MRREL.RRF

AUI1

Unique identifier for first atom

NA

None

No comments

MRCONSO.RRF

CODE

Unique Identifier or code for string in source

NA

ConceptReference.conceptCode

(Model element is a ResolvedConceptReference with the value sourceOf attached to the appropriate AssociationList containing this particular REL or RELA association name.) Mapping to the CODE depends upon the CUI or a combination of CUI and AUI values. If the CODE value is "NOCODE" then LexBIG concatenates "NOCODE" with a "-" and the CUI value. Target or source code value requires use of the DIR flag which indicates the directionality of the relationship in REL or RELA. CUI1 can be used as a pointer to the source CODE value if DIR equals Y, else CUI1 is the targetCode. Similarly, if an AUI exists AUI1 can be an indicator for CODE value to be either or source or target depending on the DIR flag.

MRREL.RRF

CUI2

Unique identifier for second concept

NA

None

No comments

MRREL.RRF

AUI2

Unique identifier for second atom

NA

None

No comments

MRCONSO.RRF

CODE

Unique Identifier or code for string in source

NA

ConceptReference.conceptCode

(Model element is a ResolvedConceptReference with the value targetOf attached to the appropriate AssociationList containing this particular REL or RELA association name.) Mapping to the CODE depends upon the CUI or a combination of CUI and AUI values. If the CODE value is "NOCODE" then LexBIG concatenates "NOCODE" with a "-" and the CUI value. Target or source code value requires use of the DIR flag which indicates the directionality of the relationship in REL or RELA. CUI2 can be used as a pointer to the source CODE value if DIR equals Y, else CUI1 is the targetCode. Similarly, if an AUI exists AUI2 can be an indicator for CODE value to be either or source or target depending on the DIR flag.

MRREL.RRF

DIR

Source asserted directionality flag

NA

None

The UMLS directional flag. Y indicates that this is the direction of the RELA relationship in its source; N indicates that it is not; otherwise indicates that it is not important or has not yet been determined. (If blank RELA, we interpret as 'N', based on empirical review of meta files).

MRREL.RRF

RELA

Relationship attribute

NA

association.id (id inherited from Entity)

Source defined associations. If RELA value is "inverse_isa" then it is changed to "hasSubtype." All others mapped as defined in source.

MRREL.RRF

REL

Relationship

NA

association.id (id inherited from Entity)

UMLS defined associations

MRSAT.RRF

METAUI

Metathesaurus asserted unique identifier

NA

None

Presence of RUI in MRSAT.RRF METAUI column indicates the association defined in MRREL has an association qualifier. Currently only MedDRA uses these.

MRSAT.RRF

ATN

None

NA

AssociatedConcept.nameAndValueList.name

No comments

MRSAT.RRF

ATV

None

NA

AssociationQualification.nameAndValueList.content

No comments

MRSAT.RRF

ATV

None

NA

AssociatedConcept.nameAndValueList.name

qualifier name is hard coded to "HCD" This association qualifier is attached to an association when the HCD field in MRHIER.RRF is populated. Associations are identified by evaluating a structured series of AUI's that describe the path to root (PTR field in MRHIER) Once these associations are identified they have and association qualifier attached to them with the value of the HCD loaded as the qualifier.

MRHIER.RRF

HCD

None

NA

AssociationQualification.nameAndValueList.content

No comments

MRSAB.RRF

SSN

Source short name

NA

association.codingSchemeId (Inherited from Entity)

No comments

MRREL.RR

REL or RELA

Relationship or Relationship attribute

NA

association.forwardName

Unqualified REL or RELA value (inverse_isa remains the same)

MRDOC.RRF

EXPL

Detailed explanation

NA

association.reverseName

Where DOCKEY in MRDOC equals REL or RELA and value is the association name and TYPE is REL or RELA name prepended to "_inverse".

MRDOC.RRF

EXPL

Detailed explanation

NA

association.inverse

Hard coded as a blank string.

MRDOC.RRF

EXPL

Detailed explanation

NA

association.isAntiReflexive

Hard coded to null.

MRDOC.RRF

EXPL

Detailed explanation

NA

association.isAntiSymmetric

Hard coded to null.

MRDOC.RRF

EXPL

Detailed explanation

NA

association.isAntiTransitive

Hard coded to null.

MRDOC.RRF

EXPL

Detailed explanation

NA

association.isAntiTransitive

Hard coded to null.

MRDOC.RRF

EXPL

Detailed explanation

NA

association.isNavigable

Hard coded as Boolean with value true.

MRDOC.RRF

EXPL

Detailed explanation

NA

association.isReflexive

Hard coded to null.

MRDOC.RRF

EXPL

Detailed explanation

NA

association.isReverseFunctional

Hard coded to null.

MRDOC.RRF

EXPL

Detailed explanation

NA

association.isSymmetric

Hard coded to null.

MRREL.RRF

SAB, REL, RELA

Source abbreviation

NA

association.isTransitive

True when the name of the association can be mapped to a source defined in the SAB attribute of MRREL.RRF. Not the SAB value itself, but extrapolated from it using SAB to REL, RELA relationship.

MRREL.RRF

SAB, REL, RELA 

Source abbreviation

NA

association.isTranslationAssociation

Hard coded to null.

MRREL.RRF

SAB, REL, RELA

Source abbreviation

NA

association.targetCodingScheme

Hard coded to null.

MRREL.RRF

SAB, REL, RELA

Source abbreviation

NA

association.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable)

Hard coded to: "UMLS-defined relationships"

MRREL.RRF

SAB, REL, RELA

Source abbreviation

NA

relations.dc

If REL, this is hard coded as "UMLS-Relations" if RELA then it is hard coded to "Relations"

MRREL.RRF

REL, RELA

None

x

propertyLink.link

This is a link established when the MRREL.RRF file contains a relationship where the CUI is related to itself. Under these conditions the relationship is mapped as a property link with the MRREL defined relationship mapped as the link value.

MRREL.RRF

REL, RELA 

None

x

propertyLink.sourceProperty

Generated as a propertyId for concept, ex: "T-10" This is retrieved based on the AUI value in MRCONSO.RRF from the entityPropertyMultiAttrib table where the AUI equals the attributeValue column.

MRREL.RRF

REL, RELA

None

x

propertyLink.targetProperty

Generated as a propertyId for concept, ex: "T-10" This is retrieved based on the AUI value in MRCONSO.RRF from the entityPropertyMultiAttrib table where the AUI equals the attributeValue column.

RSAB.RRF

SVER

Release date or version number of a source

codingScheme.representsVersion

No comments

RSAB.RRF

SSN

Source short name

codingScheme.codingScheme?

No comments

RSAB.RRF

SON

Source Official Name

codingScheme.formalName

No comments

RSAB.RRF

SON

Hard coded to "en"

codingScheme.defaultLanguage

No comments

MRSAT.RRF

ATV

None

concept.presentation.language

Unique to snomed.

Document Header

format-version

—

Not mapped

Document Header

data-version

CodingScheme.representsVersion

Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED"

Document Header

version

CodingScheme.representsVersion

Deprecated - use data-version if present.

Document Header

date

—

Not mapped

Document Header

saved-by

—

Ignored but included if contained in the remark entity.

Document Header

auto-generated-by

—

Ignored but included if contained in the remark entity.

Document Header

subsetdef

—

Not mapped.

Document Header

import

—

Deprecated - Imports are used to assemble a larger document from smaller.

Document Header

typeref

—

Deprecated.

Document Header

synonymtypedef

—

Not mapped.

Document Header

idspace

—

Not mapped.The idspace is a triple - localName, URN and description.

Document Header

default-relationship-id-prefix

—

Not mapped.

Document Header

id-mapping

CodingScheme.supportedAssociation

This is more generalized than the LexGrid model, as it supports mapping between any id's. Note that its primary purpose, however, is to handle supportedAssociation.

Document Header

remark

CodingScheme.entityDescription

Will combine multiple remark entities into the entityDescription.

Document Header

default-namespace

codingScheme.codingScheme

Will use default-namespace if provided; otherwise will use filename without the extension.

Document Header

default-namespace

codingScheme.formalName

Will use default-namespace if provided; otherwise will use filename without the extension.

HeaderDocument

default-namespace

codingScheme.registeredName

Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension.

HeaderDocument

default-namespace

codingScheme.defaultLanguage

Hard coded "en"

HeaderDocument

default-namespace

codingScheme.isNative

Hard coded "true"

Stanza

id

CodedEntry.conceptCode

No notes

Stanza

name

CodedEntry.entityDescription

No notes

Stanza

name

CodedEntry.presentation['textualPresentation'].text

No notes

Stanza

name

CodedEntry.presentation['textualPresentation'].isPreferred = true

No notes

Stanza

alt_id

None

No notes

Stanza

alt_id

CodedEntry.property['alt_id'].propertyId

No notes

Stanza

alt_id

CodedEntry.property['alt_id'].text

No notes

Stanza

is_anonymous

CodedEntry.isAnonymous = true

No notes

Stanza

is_obsolete

CodedEntry.isActive = false

No notes

Stanza

def

CodedEntry.definition

No notes

Stanza

def

CodedEntry.definition.isPreferred = true

No notes

Stanza

def.dbxref

—

See dbxref

Stanza

comment

CodedEntry.comment.text

No notes

Stanza

subset

property[subset tag]

See subsetdef

Stanza

synonym

presentation['textualPresentation'].text

No notes

Stanza

synonym.scope

presentation['textualPresentation'].degreeOfFidelity

No notes

Stanza

synonym.type

presentation['textualPresentation'].representationalForm

No notes

Stanza

synonym.dbxref

—

See dbxref

Stanza

exact_synonym

—

See synonym

Stanza

narrow_synonym

—

See synonym

Stanza

broad_synonym

—

See synonym

Stanza

xref

associations.['mapsTo']

No notes

Stanza

xref_analog

—

See synonym

Stanza

xref_unk

None

No notes

Stanza

is_a

associations.['hasSubtype']

Reverse of the source and target.

Stanza

is_a.namespace

None

If present, the supplied namespace becomes the owning "codingScheme".

Stanza

is_a.derived

associations.hasSubtype.associationQualifier

If present, need to include derived in the supportedAssociationQualifiers section

Stanza

intersection_of

None

Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets.

Stanza

union_of

—

Same as OWL

Stanza

disjoint_from

—

Same as OWL

Stanza

relationship

associations.

No notes

Stanza

relationship.not_necessary

associations..associationQualifier

No notes

Stanza

relationship.inverse_necessary

associations..associationQualifier

No notes

Stanza

relationship.namespace

None

If present, the supplied namespace becomes the owning "codingScheme".

Stanza

relationship.derived

associations..associationQualifier

No notes

Stanza

relationship.cardinality

associations..associationQualifier