Specimen Classes and Attributes

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Listed in CDEs Sequenced by UML Class

Tumor-specific entries are annotated with their associated tumor types.

Class	CDE Public Id	CRF Question Text	Data Element	Definition	Valid Values (hover for Value Meaning)
Specimen - 2177026	2008429v1	# of Aliquots	Aliquot Number	Number of aliquots associated with a sample/specimen.
Specimen - 2177026	3009159v1	Procedure	Biospecimen Collection Procedure Name	Name of of the test or procedure used for biospecimen acquisition,	Core Needle Biopsy \| FNA \| Other \| Cytology \| VATS Surgical Specimen \| Mediastinoscopy \| Surgical Biopsy \| Bronchoscopy Biopsy
Specimen - 2177026	3103514v1	Method of Tissue Procurement	Biospecimen Procurement Method Type	Text term that describes the method of which tumor/cancer tissue is removed from a patient.	Excisional Biopsy \| Surgical Resection \| Aspirate \| Incisional Biopsy \| Other \| Endoscopic Biopsy \| Other Method, specify \| Laparoscopic Partial Nephrectomy \| Open Partial Nephrectomy \| Hand Assisted Laparoscopic Radical Nephrectomy \| Laparoscopic Radical Nephrectomy \| Open Radical Nephrectomy \| Endo Rectal Tumor Resection \| Pan-Procto Colectomy \| Abdomino-perineal Resection of Rectum \| Anterior Resection of Rectum \| Total Colectomy \| Sigmoid Colectomy \| Transverse Colectomy \| Right Hemicolectomy \| Left Hemicolectomy \| Tumor Resection \| Open Craniotomy \| Fine Needle Aspiration \| Needle Biopsy \| Indeterminant \| Endoscopic Mucosal Resection (EMR)
Specimen - 2177026	3234083v1	Research Sample	Collection Research Biospecimen Name	Text identification of a biospecimen collected for an individual participating in a research setting.
Specimen - 2177026	2195135v1	Time of Freezing	Freezing Time	The freezing time of the participant's specimen or tissue.
Specimen - 2177026	2220525v1	Date Last Urine Void	Last Urine Void Date	The date of the last urine void sample.
Specimen - 2177026	2220529v1	Time Last Urine Void	Last Urine Void Time	The time of the last urine void sample.
Specimen - 2177026	3119691v1	What is the nature of the submitted specimen?	Pathologic Specimen Submitted Source	Source or pathologic origin of specimen tissue submitted.	Normal Tissue \| Regional Cutaneous or Subcutaneous Metastasis \| Regional Lymph Node Metastasis \| Distant Metastases, specify site \| Primary Tumor
Specimen - 2177026	3371409v1	(If yes) Were the therapeutic changes noted in:	Preoperative Therapeutic Effect Anatomic Site	Anatomic site showing therapeutic effects of preoperative therapy through tissue sampling.	Breast and nodes \| Nodes only \| Breast only
Specimen - 2177026	2414969v1	Research collection tubes/amounts	Research Specimen Collected Tube Type	Types of specimen tube(s) with specimen amounts collected for research purposes.	8 cc blood 2nd tube \| 8 to 10 cc ACD \| 10 cc EDTA \| 10 cc Wildcard tube \| 100 cc urine \| 8 cc blood
Specimen - 2177026	2187711v1	Result of Draw	Sample Collection Result	Final outcome of the activity of collecting a sample, in terms of success or not obtained.	Sample Obtained Successfully \| Sample Not Obtainable
Specimen - 2177026	2321283v1	Sample Weight (gm)	Sample Weight In Gram Number	Numeric value to represent the weight of a specimen or tissue sample in number of grams.
Specimen - 2177026	64674v4	Accession Number	Specimen Accession Number	the number assigned to the surgical pathology specimen to uniquely identify it.
Specimen - 2177026	2230047v4	Specimen Accession #	Specimen Accession Number	The alphanumeric identifier assigned to the specimen to uniquely identify it.
Specimen - 2177026	2189033v1	Number of aliquots	Specimen Aliquot Number	information about the number of aliquots.
Specimen - 2177026	2189021v1	Average aliquot volume	Specimen Aliquot Volume Average Value	information about the average aliquot volume.
Specimen - 2177026	3544444v1	Was specimen collected-Antiglycan antibodies	Specimen Alpha-Gal Glycosphingolipid Antibodies Collected Yes No Indicator	the yes/no indicator that asks whether a specimen was collected relating to antiglycan antibodies.	No \| Yes
Specimen - 2177026	3579604v1	Were specimens collected for anti-glycan antibodies correlative biology study	Specimen Alpha-Gal Glycosphingolipids Antibody Correlative Study Collected Yes No Unknown Not Applicable Indicator	the yes/no/unknown/not applicable indicator that asks whether a specimen was collected for a correlative study relating to antiglycan antibodies.	No \| Yes \| Unknown \| Not Applicable
Specimen - 2177026	2183030v1	Specimen Amount	Specimen Amount	The number that describes the amount of specimen included in the sample.
Specimen - 2177026	3369255v1	Was the anal specimen collected	Specimen Anus Collected Ind-2	the yes/no question related to the sample collected from the patient for analysis or examination from the lower opening of the digestive tract, lying in the cleft between the buttocks, through which fecal matter is extruded.	No \| Yes
Specimen - 2177026	3369271v1	Specify reason	Specimen Anus Negation Collected Specify	the free-text field related to not having the sample collected from the patient for analysis or examination from the lower opening of the digestive tract, lying in the cleft between the buttocks, through which fecal matter is extruded.
Specimen - 2177026	3226338v1	Specify	Specimen Biological Storage Other Specify Text	The free text field that describes under which condition the specimen was stored.
Specimen - 2177026	2190866v1.1	Storage type	Specimen Biological Storage Specimen Biological Storage Type	information related to biological storage of a specimen._the type of storage for a biologic specimen.	Refrigerator (4 degrees C) \| Standard non-cycling freezer (-20 degrees C) \| Ultra-cold Freezer (-80 degrees C) \| Liquid Nitrogen (<-150 degrees C) \| Other \| Room temperature
Specimen - 2177026	3226336v1	If the specimen WAS NOT shipped on the day of collection, under which conditions was the specimen stored?	Specimen Biological Storage Type	The name that describes the type of condition under which a specimen was stored.	Not Applicable \| Not stored per protocol, specify \| Stored per protocol
Specimen - 2177026	2587076v1	Site of biopsy	Specimen Biopsy Anatomic Site	the anatomic location of a biopsy of a pathologic specimen or tissue.	Bone Marrow \| Primary Neoplasm \| Other \| Lung \| Liver \| Skin \| GI
Specimen - 2177026	2201978v1	Biopsy Size	Specimen Biopsy Size Number	The size in millimeters of the biopsy specimen.
Specimen - 2177026	3235995v1	Specify biopsy site:	Specimen Biopsy Specify Text	information regarding a biopsy of a pathologic specimen or tissue._Be specific about something; define clearly._Text; the words of something written.
Specimen - 2177026	2482150v1	Was a biopsy specimen submitted?	Specimen Biopsy Submitted Indicator	The yes/no indicator that asks whether a biopsy specimen was submitted.	YES \| NO
Specimen - 2177026	2453354v2	Stored at temperature specified in SOP?	Specimen Biostorage Condition Category	Text term to represent the temperature conditions under which a biological specimen is stored.	-100 to -130 Degrees Celsius \| Vapor Phase Liquid Nitrogen \| 4 Degrees Celsius \| -20 Degrees Celsius \| -80 Degrees Celsius \| Room Temperature
Specimen - 2177026	2624022v1	Block #	Specimen Block Identifier	Unique identifier used to refer to a specific specimen block.
Specimen - 2177026	64679v4	Blocks	Specimen Block Number	the block number of a specimen.
Specimen - 2177026	2006887v1	total number of cells counted	Specimen Cell Count Total Value	the total number of cells counted.
Specimen - 2177026	2190548v1	Percent area tumor cells	Specimen Cell Percentage Value	Total area of a section represented by tumor cells, expressed as a percentage value.
Specimen - 2177026	64336v3	Other specify	Specimen Cell Source Specify	the free text field to describe the source of cells used for analysis for pathology.
Specimen - 2177026	3233185v1	Does the specimen consist of whole nuclei or sections of nuclei, eg. Sections of formalin-fixed, paraffin-embedded tissue?	Specimen Characteristics Nucleus Category	The response to a question that asks if the nuclei specimen is either whole or sections.	Sections of nuclei \| Whole nuclei
Specimen - 2177026	64511v3	% Coefficient of Variation	Specimen Coefficient of Variation Percentage Value	the percentage value for the coefficient of variation.
Specimen - 2177026	3203075v1	City of Sample Procurement	Specimen Collected Address City Name	Text to identify the name of a city in which the sample was procured.
Specimen - 2177026	3203072v1	State / Province / Country of Sample Procurement	Specimen Collected Address Geographic Area Name	Text to identify the name of the state, province, or country in which the sample was procured.
Specimen - 2177026	2227029v1	Amount Obtained	Specimen Collected Amount Number	Number that describes the amount of specimen included in the sample.
Specimen - 2177026	2261853v1	Number of samples collected (total)	Specimen Collected Count	Numeric count of the total number of tissue samples/specimens collected.
Specimen - 2177026	2202102v1	Date Collected	Specimen Collected Date	The date on which the specimen was collected.
Specimen - 2177026	64191v4	Date Obtained Date Obtained	Specimen Collected Date	the date on which a specimen was collected.
Specimen - 2177026	2716541v1	Name of Sample	Specimen Collected Gynecologic Name	Names to identify samples collected from a patient on a gynecologic study. [Manually-curated]	Pre Cycle 6 frozen plasma Off treat prior to starting cycle 6 \| Pre Cycle 6 frozen plasma Before starting cycle 6 \| Pre Cycle 3 frozen plasma Off treat prior to starting cycle 3 \| Pre Cycle 3 frozen plasma Before starting cycle 3 \| Pre Cycle 1 frozen plasma \| Pre Cycle 3 tumor biopsy Off treat prior to starting cycle 3 \| Pre Cycle 3 tumor biopsy Before starting cycle 3 \| Pre Cycle 1 tumor biopsy
Specimen - 2177026	2423688v1	give reason	Specimen Collected IBCSG Specify	the free text field to specify the status of a pathology specimen that was collected.
Specimen - 2177026	2423687v1	Is protocol-required pathology material available	Specimen Collected IBCSG Status	the status of a pathology specimen that was collected.	Available now \| Available within 3 months \| Not available
Specimen - 2177026	2185981v1	Must provide tissue and blood samples	Specimen Collected Ind-2	the yes/no indicator related to the sample collected from the patient for analysis or examination.	No \| Yes
Specimen - 2177026	3163341v1	Collected?	Specimen Collected Indicator	Text term to signify whether a biospecimen was collected from an individual.	Unknown \| Yes \| No
Specimen - 2177026	64340v3	Other specify	Specimen Collected Method Specify	the free text field to describe some other type of procedure or method used to collect the specimen.
Specimen - 2177026	64338v3	How was the specimen obtained	Specimen Collected Method Type	the type of procedure or method used to collect the specimen.	Fine needle aspiration \| Abdominal/ascites effusion \| Biopsy \| Bronchial alveolar lavage (BAL) \| Bronchial brushing/washing \| Mediastinoscopy \| Pericardial effusion \| Pleural effusion \| Pleural lavage \| Sputum, induced \| Sputum, spontaneous \| Other \| Thoracotomy \| Sternotomy \| Bronchoscopy
Specimen - 2177026	2261834v2	Number of patients from whom samples have been collected	Specimen Collected Patient Count	Numeric count of the number of patients for whom tissue samples are collected.
Specimen - 2177026	64332v5	Sample Period	Specimen Collected Period Type	the timeframe of specimen collection relative to treatment and diagnosis.	Complete response \| Cycle 1 - Day 8 \| Cycle 1 - Day 21 \| Cycle 4 - Day 8 \| Cycle 4 - Day 21 \| Cycle 8 - Day 1 \| Cycle 12 - Day 1 \| Pre-registration \| Post-treatment \| Pre-diagnosis \| Pre-treatment \| Unknown \| Baseline \| Death \| Progression/Relapse \| Diagnosis of second malignancy \| After study entry \| Diagnosis of primary \| Second-look surgery \| Other
Specimen - 2177026	2548335v1	Breast Specimen	Specimen Collected Submission Type	Text description of the type of tissue specimen submitted for review.	Single specimen \| Main specimen with separately submitted margins
Specimen - 2177026	2188550v1	Time of sampling	Specimen Collected Text	the sample collected from the patient for analysis or examination.
Specimen - 2177026	64192v4	Time Specimen Collected	Specimen Collected Time	the time at which a specimen was collected.
Specimen - 2177026	2008060v1	Specimen Collection Method	Specimen Collection Method Type	Type of method used for specimen acquisition, using an enumerated set of surgical and procedural approaches. .	Not Specified \| Core Needle Biopsy \| Surgical Biopsy \| FNA \| Axill Node Dissect \| Breast Bx \| Exc Bx/Lumpectomy \| Incisional Bx \| Lumpectomy w/LN Dissection \| Needle Bx \| Partial Mastectomy \| Punch Bx Skin \| Sentinel Node Bx \| Other \| MASTECTOMY \| Modified Radical Mastectomy
Specimen - 2177026	2004369v4	Sample No.	Specimen Collection Sampling Number	the specimen collection sample number.
Specimen - 2177026	2007033v1	Have or will specimens be shipped within ten days of registration	Specimen Confirmation Submitted Ind-2	the yes/no indicator whether there was confirmation that a specimen was submitted or shipped.	No \| Yes
Specimen - 2177026	2222481v1	Sample period	Specimen Course Collection Number	the completed course number during which a specimen was collected.
Specimen - 2177026	3357860v1	Were all specimens collected at this visit	Specimen Current Patient Visit Collected Ind-2	the yes/no question related to the sample collected at the present visit from the patient for analysis or examination.	No \| Yes
Specimen - 2177026	2673869v1		Specimen First Weight java.lang.Float	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Preceding all others in time or space or degree.:The vertical force exerted by a mass as a result of gravity._Generic value domain for a primitive java datatype that is Single-precision floating point number (32-bit IEEE 754).
Specimen - 2177026	3005037v1	Date of tissue fixation	Specimen Fixative Date	the date tissues or cells were prepared for microscopic study.
Specimen - 2177026	3005035v1	Duration of fixation	Specimen Fixative Duration	the duration of fixation relating to tissues or cells prepared for microscopic study.
Specimen - 2177026	65080v3	Other, specify	Specimen Fixative Specify	the free text field to identify other fixatives or chemicals used to preserve a tissue specimen.
Specimen - 2177026	65078v3	Fixative	Specimen Fixative Type	the field to identify the type of fixative used to preserve a tissue specimen.	RNAlater \| Glutaraldehyde \| Saline \| OCT media \| Formalin \| Other \| Unknown
Specimen - 2177026	2194303v1	# Specimens Frozen	Specimen Frozen Number	The number of specimens frozen.
Specimen - 2177026	3123687v1	Is there frozen tissue available?	Specimen Frozen Tissue Availability Indicator	Text indicator to signify whether frozen tissue is available.	Unknown \| No \| Yes
Specimen - 2177026	64342v3	Specimen ID Number	Specimen Identifier Number	a unique identification number for the laboratory specimen submitted for analysis or bank storage.
Specimen - 2177026	2181544v1	Date of Immunofixation	Specimen Immunofixation Lab Date	the date on which a patient laboratory specimen is processed using an immunofixation technique.
Specimen - 2177026	2626411v1	Specimen source	Specimen Location Anatomic Site Name	name of the organ site (single) within the body related to the location of a specimen.	Mammary Gland \| Ear, Pinna (External) \| Adipose \| Amniotic Fluid \| Testicle \| Vena Cava, Inferior/Superior \| Neck/Chest \| Vein \| Adenoid \| Leptomeninges \| Other \| Epidural space \| Lymph node(s) Para aortic \| Lymph node(s) Scalene \| Lymph nodes(s) Mediastinal \| Lymph node(s) Regional \| Lymph node(s) Distant \| Retro-orbital Area \| Paraspinal Ganglion \| Nerve(s) Cranial \| Lymph Node(s) Subclavicular \| Rectosigmoid Junction \| Splenic Flexure \| Transverse Colon \| Ascending Colon Hepatic Flexure \| Floor of Mouth \| Alveolar Ridge \| Pineal Gland \| Clitoris \| Gastroesophageal Junction \| Trunk, Superficial \| Urethra \| Peritoneum \| Upper extremity \| Placenta \| Antrum \| Cardia \| Capillary \| Cartilage \| Lacrimal Gland \| Ligament \| Tendon \| Umbilical Cord \| Vas Deferens \| Colon, mucosa only \| Carotid body \| Ampulla of Vater \| Ganglia \| Foreskin \| Fluid \| Esophagus, Mucosa only \| Effusion \| Parathyroid \| Oral Cavity, Mucosa only \| Nails \| Mesothelium \| Trachea/Major Bronchi \| Tonsil, Pharyngeal \| Synovium \| Small Bowel, Mucosa only \| Stomach, Mucosa only \| Skeletal Muscle \| Peri-orbital Soft Tissue \| Nasal Soft Tissue \| Mediastinal Soft Tissue \| Lymph Node(s) Submandibular \| Lymph Node(s) Splenic \| Lymph Node(s) Retroperitoneal \| Lymph Node(s) Popliteal \| Lymph Node(s) Parotid \| Lymph Node(s) Occipital \| Lymph Node(s) Mesenteric \| Lymph Node(s) Iliac-external \| Lymph Node(s) Iliac-common \| Lymph Node(s) Femoral \| Lymph Node(s) Epitrochlear \| Skeletal Bone \| Extremities \| Tibia \| Soft Tissue \| Not Applicable \| Oropharynx \| Nasal Cavity \| Aortic Body \| Spinal Cord \| Esophagus \| Appendix \| Ascending colon \| Bone \| Bone marrow \| Brain \| Carina \| Cecum \| Cerebrospinal fluid \| Chest wall \| Descending colon \| Diaphragm \| Fallopian tube \| Lymph nodes \| Mediastinum \| Neck \| Pericardium \| Pleura \| Prostate \| Rectum \| Trunk \| Axilla \| Breast \| Heart \| Kidney \| Hip \| Wrist \| Chest \| Abdomen \| Vulva \| Vertebra \| Frontal lobe \| Cerebellum \| Central nervous system \| Spine \| Tonsil \| Spleen \| Buccal mucosa \| Hard palate \| Parotid gland \| Thymus \| Ovary \| Stomach \| Mouth \| Thorax \| Genitourinary \| Ischium \| Retroperitoneum \| Skull \| Mandible \| Maxilla \| Sternum \| Ribs \| Scapula \| Clavicle \| Humerus \| Femur \| Fibula \| Ilium \| Lung \| Liver \| Skin \| Lymph node \| Anus \| Large bowel \| Jejunum \| Ileum \| Pelvis \| Vagina \| Pancreas \| Cervix \| Colon \| Uterus \| Adrenal gland \| Anal sphincter \| Blood \| Aorta \| Artery \| Back \| Buttock \| Bronchus \| Conjunctiva \| Salivary gland \| Scalp \| Lip \| Testicle \| Duodenum \| Eye \| Gallbladder \| Intestine \| Larynx \| Penis \| Tongue \| Muscle \| Retina \| Trachea \| Peritoneal cavity \| Pharynx \| Scrotum \| Arm \| Leg \| Ankle \| Palate \| Acetabulum \| Anal canal \| Anorectum \| Bile duct \| Blood vessel \| Brain stem \| Bronchiole \| Brow \| Buccal cavity \| Carotid artery \| Cerebral cortex \| Colon and rectum \| Connective tissue \| Ear \| Endocrine gland \| Finger \| Foot \| Forearm \| Gastrointestinal tract \| Groin \| Gum \| Hand \| Hypopharynx \| Lymphoma \| Nasopharynx \| Oral cavity \| Patella \| Pituitary gland \| Pylorus \| Sacrum \| Shoulder \| Sigmoid colon \| Thigh \| Uvula \| Vertebral column \| Ureter \| Cerebrum \| Throat \| Bladder \| Omentum \| Mesentery \| Calf \| Chin \| Elbow \| Epididymis \| Forehead \| Jaw \| Knee \| Laryngopharynx \| Liver and intrahepatic duct \| Liver/Spleen \| Lumbar spine \| Lymph Node(s) Int Mammary \| Lymph Node(s) Mammary \| Lymph Node(s) Axilla \| Lymph Node(s) Cervical \| Lymph Node(s) Hilar \| Lymph Node(s) Inguinal \| Lymph Node(s) Supraclav \| Lymph Node(s) Pelvic \| Mini Mantle \| Neck/Chest/Abdomen/Pelvis \| Nerve \| Ocular Orbits \| PA/Lat \| Perianus \| Popliteal fossa \| Round ligament \| Sinus(es) \| Sinus(es), Maxillary \| Small intestine \| Spine/Femur \| Spine/Femur/Radius \| Subcutaneous tissue \| Thoracic spine \| Thoracic/Lumbar spine \| Thyroid gland \| Urinary tract \| Whole body \| Abdomen/Pelvis \| Abdominal wall \| Antecubital fossa \| Aqueous Fluid \| Auditory canal \| Autonomic nervous system \| Bowel \| Broad ligament \| Bronchus and Lung \| Central Line Catheter \| Cervical spine \| Cervical/Thoracic/Lumbar spine \| Chest/Abdomen/Pelvis \| Chest/Pelvis \| Common duct \| Ear canal \| Esophagogastric junction \| Fundus of stomach \| Head - face or neck, NOS \| Head/Neck \| Head/Neck/Chest/Adb/Pelvis \| Hepatic duct \| Joints \| Tongue, Base of tongue
Specimen - 2177026	3579605v1	Were specimens collected for NKp30 isoforms correlative biology study	Specimen Natural Killer Cell-Mediated Cytotoxicity Pathway Isoform Correlative Study Collected Yes No Unknown Not Applicable Indicator	the yes/no/unknown/not applicable indicator that asks whether a specimen was collected for a correlative study relating to NKp30 isoforms.	No \| Yes \| Unknown \| Not Applicable
Specimen - 2177026	3544445v1	Was specimen collected-NKp30 Isoforms	Specimen Natural Killer Cell-Mediated Cytotoxicity Pathway Isoforms Collected Yes No Indicator	the yes/no indicator that asks whether a specimen was collected relating to NKp30 isoforms.	No \| Yes
Specimen - 2177026	3334808v1	Uncharged Slides Count	Specimen Negation Charge Slide Submission Count	A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._An operation in which a term denies or inverts the meaning of another term or construction._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._the quantity of the specified item.
Specimen - 2177026	3334809v1	Uncharged Slides Thickness	Specimen Negation Charge Slide Submission Thickness Measurement	A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._An operation in which a term denies or inverts the meaning of another term or construction._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._The dimension between two surfaces of an object, usually the smallest dimension as opposed to the width or the length: also, viscous consistency._Measurement; the size or magnitude of something.
Specimen - 2177026	2178120v1	Stored in buffer	Specimen Nipaspirate Buffer Stored Code	TBD	1 \| 0 \| 9 \| 3
Specimen - 2177026	2178269v1	From which breast was the specimen taken?	Specimen Nipaspirate Source Code	TBD	9 \| 1 \| 2 \| 3
Specimen - 2177026	2182684v1	Specify reason	Specimen Not Submitted Reason	the reason the patient's or participant's specimen was not submitted.	Intercurrent illness \| Sample not required \| Insufficient/scant sample \| Patient unable to submit sample \| Patient did not keep appointment \| Patient request \| Statutory holiday \| Unsuccessful blood draw \| Facility will not release block \| Block depleted/insufficient tissue \| Other \| Institution error \| Patient refusal \| Not available \| Institution won't release \| Sample lost or destroyed
Specimen - 2177026	2190544v1	Not submitted specify	Specimen Not Submitted Specify	the specified reason a specimen was not submitted with the specimen form.
Specimen - 2177026	2007005v3	Reason research tissue specimen was not submitted	Specimen Not Submitted Text	the free-text field to specify the reason a research specimen was not submitted.
Specimen - 2177026	3369252v1	Was the oral specimen collected	Specimen Oral Cavity Collected Ind-2	the yes/no question related to sample collected from the patient for analysis or examination from the cavity located at the upper end of the alimentary canal, behind the teeth and gums that is bounded on the outside by the lips, above by the hard and soft palates and below by the tongue.	No \| Yes
Specimen - 2177026	3369269v1	Specify reason	Specimen Oral Cavity Negation Collected Specify	the free-text field related to not having sample collected from the patient for analysis or examination from the cavity located at the upper end of the alimentary canal, behind the teeth and gums that is bounded on the outside by the lips, above by the hard and soft palates and below by the tongue.
Specimen - 2177026	2548401v1	Other:	Specimen Other Therapeutic Effect Text	Text description of a therapeutic response other than those identified.
Specimen - 2177026	3369254v1	Was the penile/scrotal specimens collected	Specimen Penis Scrotum Collected Ind-2	the yes/no question related to the sample collected from the patient for analysis or examination from the male organ of urination and copulation or from the musculocutaneous pouch that encloses the testicles.	No \| Yes
Specimen - 2177026	3369270v1	Specify reason	Specimen Penis Scrotum Negation Collected Specify	the free-text field related to not having sample collected from the patient for analysis or examination from the male organ of urination and copulation or from the musculocutaneous pouch that encloses the testicles.
Specimen - 2177026	3369256v1	Was the perianal specimen collected	Specimen Perianal Region Collected Ind-2	the yes/no question related to the sample collected from the patient for analysis or examination from the skin area around the anus.	No \| Yes
Specimen - 2177026	2189050v1	Time period specimen collected	Specimen Period Collected Time	information about the time period during which a specimen was collected.	Approximately 52 weeks post randomization \| Approximately 5 years post randomization \| Approximately 12 weeks post randomization \| Approximately 3 years post randomization \| Progression \| Surgery \| Pre-treatment \| During Initial Treatment \| During Follow-Up, No. Therapy \| At Relapse/Progression \| Baseline \| Recurrence \| Original diagnosis \| 2 weeks after final bevacizumab dose \| Bevacizumab dose #5 \| Bevacizumab dose #3 \| 2 weeks after final vaccine dose \| Vaccine dose #7 \| Vaccine dose #5 \| 24 hours after ibrutinib dose \| 7 hours after ibrutinib dose \| 4 hours after ibrutinib dose \| 2 hours after ibrutinib dose \| 1 hour after ibrutinib dose \| 0-30 mins prior to ibrutinib dose \| At end of crossover treatment \| After cycle 1 of crossover \| At end of initial treatment \| After cycle 1 of initial treatment \| Cycle 7 week 28 \| Cycle 5 week 20 \| Cycle 3 week 12 \| During chemotherapy \| At disease progression \| 6 months \| 12 months
Specimen - 2177026	2186564v1	Storage Method	Specimen Preservation Method Type	Cryopreservation means of storing cells, tissues, or organs.	-80 Deg C \| LN2
Specimen - 2177026	2178278v1	Temperature of specimen during processing:	Specimen Process Temperature During Code	TBD	9 \| 3 \| 1 \| 2
Specimen - 2177026	2178292v1	Temperature of original sample prior to processing:	Specimen Process Temperature Prior Code	TBD	9 \| 2 \| 3 \| 8 \| 1
Specimen - 2177026	2178293v1	Approximately how long was the original sample maintained at the above temperature prior to processing (value):	Specimen Process Time Prior Value	TBD
Specimen - 2177026	2178264v1	Approximate time elapsed between specimen collection and final storage: (unit)	Specimen Process Time Unit Code	TBD	9 \| 1 \| 2 \| 3
Specimen - 2177026	2178294v1	Approximately how long was the original sample maintained at the above temperature prior to processing (unit):	Specimen Process Time Unit Prior Code	TBD	9 \| 1 \| 2 \| 3
Specimen - 2177026	2178263v1	Approximate time elapsed between specimen collection and final storage: (value)	Specimen Process Time Value	TBD
Specimen - 2177026	3005015v1	Volume Received	Specimen Quantity Amount Milliliter Number	Numeric value for the amount or quantity of a specimen received, measured in milliliters (mL).
Specimen - 2177026	2004951v4.1	Units	Specimen Quantity UOM	the unit of measure associated with the specimen.	dL \| dm \| g \| L \| m \| mcg \| mcL \| mEq \| mL \| ng \| pg \| Eq \| IU \| MMM \| Osmol \| cc \| cm \| gravity \| kg \| mOsmol \| mU \| mcm \| mg \| milliunit \| mm \| mmol \| mol \| nm \| unit \| N/A \| % \| mm3 \| VP \| mm^3
Specimen - 2177026	2241682v1	Number of specimens received	Specimen Received Count	the number of specimens received.
Specimen - 2177026	64196v3	Time of Receipt of Specimens	Specimen Received Time	a time of day when a sample of tissue, blood or urine collected for analysis or research is received by a facilty.
Specimen - 2177026	2191144v1	Total volume/weight	Specimen Received Total Measurement	the total volume or weight of a specimen received.
Specimen - 2177026	64920v3	Patient's initial consent for sharing specimen(s) with outside researchers.	Specimen Research Consent Shared Ind-3	the yes/no indicator that asks whether the patient has given initial consent to share his/her specimen with outside researchers.	No \| Yes \| Unknown
Specimen - 2177026	2007102v1	Site from which specimen was taken	Specimen Site ICD-O Code	an ICD-O topography code associated with an anatomic site from which a tissue or tumor specimen was taken.	C00 \| C00-C14 \| C00.0 \| C00.1 \| C00.2 \| C00.3 \| C00.4 \| C00.5 \| C00.6 \| C00.8 \| C00.9 \| C01 \| C01.9 \| C02 \| C02.0 \| C02.1 \| C02.2 \| C02.3 \| C02.4 \| C02.8 \| C02.9 \| C03 \| C03.0 \| C03.1 \| C03.9 \| C04 \| C04.0 \| C04.1 \| C04.8 \| C04.9 \| C05 \| C05.0 \| C05.1 \| C05.2 \| C05.8 \| C05.9 \| C06 \| C06.0 \| C06.1 \| C06.2 \| C06.8 \| C06.9 \| C07 \| C07.9 \| C08 \| C08.0 \| C08.1 \| C08.8 \| C08.9 \| C09 \| C09.0 \| C09.1 \| C09.8 \| C09.9 \| C10 \| C10.0 \| C10.1 \| C10.2 \| C10.3 \| C10.4 \| C10.8 \| C10.9 \| C11 \| C11.0 \| C11.1 \| C11.2 \| C11.3 \| C11.8 \| C11.9 \| C12 \| C12.9 \| C13 \| C13.0 \| C13.1 \| C13.2 \| C13.8 \| C13.9 \| C14 \| C14.0 \| C14.2 \| C14.8 \| C15 \| C15-C26 \| C15.0 \| C15.1 \| C15.2 \| C15.3 \| C15.4 \| C15.5 \| C15.8 \| C15.9 \| C16 \| C16.0 \| C16.1 \| C16.2 \| C16.3 \| C16.4 \| C16.5 \| C16.6 \| C16.8 \| C16.9 \| C17 \| C17.0 \| C17.1 \| C17.2 \| C17.3 \| C17.8 \| C17.9 \| C18 \| C18.0 \| C18.1 \| C18.2 \| C18.3 \| C18.4 \| C18.5 \| C18.6 \| C18.7 \| C18.8 \| C18.9 \| C19 \| C19.9 \| C20 \| C20.9 \| C21 \| C21.0 \| C21.1 \| C21.2 \| C21.8 \| C22 \| C22.0 \| C22.1 \| C23 \| C23.9 \| C24 \| C24.0 \| C24.1 \| C24.8 \| C24.9 \| C25 \| C25.0 \| C25.1 \| C25.2 \| C25.3 \| C25.4 \| C25.7 \| C25.8 \| C25.9 \| C26 \| C26.0 \| C26.8 \| C26.9 \| C30 \| C30-C39 \| C30.0 \| C30.1 \| C31 \| C31.0 \| C31.1 \| C31.2 \| C31.3 \| C31.8 \| C31.9 \| C32 \| C32.0 \| C32.1 \| C32.2 \| C32.3 \| C32.8 \| C32.9 \| C33 \| C33.9 \| C34 \| C34.0 \| C34.1 \| C34.2 \| C34.3 \| C34.8 \| C34.9 \| C37 \| C37.9 \| C38 \| C38.0 \| C38.1 \| C38.2 \| C38.3 \| C38.4 \| C38.8 \| C39 \| C39.0 \| C39.8 \| C39.9 \| C40 \| C40-C41 \| C40.0 \| C40.1 \| C40.2 \| C40.3 \| C40.8 \| C40.9 \| C41 \| C41.0 \| C41.1 \| C41.2 \| C41.3 \| C41.4 \| C41.8 \| C41.9 \| C42 \| C42.0 \| C42.1 \| C42.2 \| C42.3 \| C42.4 \| C44 \| C44.0 \| C44.1 \| C44.2 \| C44.3 \| C44.4 \| C44.5 \| C44.6 \| C44.7 \| C44.8 \| C44.9 \| C47 \| C47.0 \| C47.1 \| C47.2 \| C47.3 \| C47.4 \| C47.5 \| C47.6 \| C47.8 \| C47.9 \| C48 \| C48.0 \| C48.1 \| C48.2 \| C48.8 \| C49 \| C49.0 \| C49.1 \| C49.2 \| C49.3 \| C49.4 \| C49.5 \| C49.6 \| C49.8 \| C49.9 \| C50 \| C50.0 \| C50.1 \| C50.2 \| C50.3 \| C50.4 \| C50.5 \| C50.6 \| C50.8 \| C50.9 \| C51 \| C51-C58 \| C51.0 \| C51.1 \| C51.2 \| C51.8 \| C51.9 \| C52 \| C52.9 \| C53 \| C53.0 \| C53.1 \| C53.8 \| C53.9 \| C54 \| C54.0 \| C54.1 \| C54.2 \| C54.3 \| C54.8 \| C54.9 \| C55 \| C55.9 \| C56 \| C56.9 \| C57 \| C57.0 \| C57.1 \| C57.2 \| C57.3 \| C57.4 \| C57.7 \| C57.8 \| C57.9 \| C58 \| C58.9 \| C60 \| C60-C63 \| C60.0 \| C60.1 \| C60.2 \| C60.8 \| C60.9 \| C61 \| C61.9 \| C62 \| C62.0 \| C62.1 \| C62.9 \| C63 \| C63.0 \| C63.1 \| C63.2 \| C63.7 \| C63.8 \| C63.9 \| C64 \| C64-C68 \| C64.9 \| C65 \| C65.9 \| C66 \| C66.9 \| C67 \| C67.0 \| C67.1 \| C67.2 \| C67.3 \| C67.4 \| C67.5 \| C67.6 \| C67.7 \| C67.8 \| C67.9 \| C68 \| C68.0 \| C68.1 \| C68.8 \| C68.9 \| C69 \| C69-C72 \| C69.0 \| C69.1 \| C69.2 \| C69.3 \| C69.4 \| C69.5 \| C69.6 \| C69.8 \| C69.9 \| C70 \| C70.0 \| C70.1 \| C70.9 \| C71 \| C71.0 \| C71.1 \| C71.2 \| C71.3 \| C71.4 \| C71.5 \| C71.6 \| C71.7 \| C71.8 \| C71.9 \| C72 \| C72.0 \| C72.1 \| C72.2 \| C72.3 \| C72.4 \| C72.5 \| C72.8 \| C72.9 \| C73 \| C73-C75 \| C73.9 \| C74 \| C74.0 \| C74.1 \| C74.9 \| C75 \| C75.0 \| C75.1 \| C75.2 \| C75.3 \| C75.4 \| C75.5 \| C75.8 \| C75.9 \| C76 \| C76.0 \| C76.1 \| C76.2 \| C76.3 \| C76.4 \| C76.5 \| C76.7 \| C76.8 \| C77 \| C77.0 \| C77.1 \| C77.2 \| C77.3 \| C77.4 \| C77.5 \| C77.8 \| C77.9 \| C80 \| C80.9
Specimen - 2177026	2220552v1	Storage Temperature (Centigrade)	Specimen Storage Temperature Number	The temperature at which the specimen was stored expressed in degrees Celsius.
Specimen - 2177026	2547385v1	Storage Temperature Type	Specimen Storage Temperature Type	The environment in which the specimen is stored.	Refrigerated \| Ambient \| Frozen \| Other \| N/A
Specimen - 2177026	2195145v1	Notes	Specimen Submission Comments Text	A free text field relating to a specimen submission.
Specimen - 2177026	2190535v1	Submission status	Specimen Submission Status	the status of specimen submission with the specimen form.	Submitted \| Not submitted
Specimen - 2177026	2990438v1	Type of tissue submitted	Specimen Submission Type	Text term to describe the form in which biospecimen material was submitted for review or evaluation.	Paraffin block(s) \| Slide(s)
Specimen - 2177026	2003954v4	Number of specimens submitted	Specimen Submitted Count	the number of specimens submitted.
Specimen - 2177026	2183870v1	Was a specimen shipped	Specimen Submitted Ind-2	the yes/no indicator that asks whether a specimen was shipped or submitted.	No \| Yes
Specimen - 2177026	2004257v3	Reasons for specimen submission	Specimen Submitted Reason	the reason a specimen was submitted.	Prestudy submission \| Complete remission/response specimen \| Relapse/recurrence specimen \| Other specimen, specify
Specimen - 2177026	2007103v1	Paperwork sent	Specimen Submitted Report Type	a report or form which is included with a specimen shipment for analysis.	Specimen Shipping Form \| Copy of Pathology Report \| Copy of Pathology Checklist \| Copy of Operative Report
Specimen - 2177026	2658018v1	Adequacy	Specimen Submitted Sufficient Text Type	The values used to describe whether bits of tissue, blood or urine that is taken or used for research purposes meets the condition or quantitative measure necessary for evaluation.	Adequate for evaluation \| Inadequate for evaluation
Specimen - 2177026	2006911v1	Specimen Type	Specimen Submitted Type	the type of specimen submitted.	Periph Bld Heparin CPT \| Periph Bld Red Grey SST \| Frozen Primary Tumor \| RPMI Tumor Fresh \| PBS Tumor Fresh \| Peripheral Blood, PAXgene DNA \| Plasma/Serum heparin \| Peripheral Blood, citrate CPT \| Periph Bld Red Top \| Periph Bld Heparin Green Top \| Peripheral Blood, EDTA purple top tube \| Peripheral Blood, DNA PAXgene tube \| Peripheral Blood, RNA PAXgene tube \| Plasma, EDTA purple top tube \| Serum, Red top tube \| Tumor tissue, snap frozen \| Periph Bld Red Grey SST \| Plasma/Serum Citrate CPT \| Periph Bld Immunicon \| Serum, SST \| Plasma, EDTA \| Peripheral blood, ACD \| Unstained slides from breast tumor area \| Unstained slides from residual breast tumor \| Representative block of residual tumor \| Core biopsy tissue in RNAlater \| Formalin-fixed tumor tissue \| OCT-embedded tumor/tissue \| PBMC \| EDTA Lavender Top Tube \| Serum Red Top \| RBC pellet \| 7.5 cc Cell Saver \| 5 cc Green \| 10 ml SST/Tiger \| Pharmacogenomics EDTA (Purple Top) \| 10 ml CPT \| Blue Top CPT Tube \| Purple Top EDTA Tube \| SST Red/Gray Top Tube \| Tumor, fresh in PBS \| Frozen section \| Peripheral blood stem cell harvest \| Karyotype \| Bone marrow core biopsy \| Red blood cells \| Leukocytes \| 5 cc Green Top \| 5 ml EDTA Purple Top \| H&E slide \| Cores from normal prostate tissue \| Cores from prostate tumor tissue \| Normal block \| Peritoneal surface tumor \| Primary colon tumor \| Paraffin embedded surgical block \| Sections on superfrost plus slides \| Other \| Platelet-poor plasma \| Whole Blood (EDTA) (2 x 5ml) \| Whole blood (EDTA) (1 x 7ml) \| Frozen serum \| Frozen Plasma \| Bone marrow \| Other \| Peripheral blood \| Serum \| Urine \| Tissue Microarray \| SNAP frozen non-malignant tissue \| SNAP frozen tumor tissue \| Slides of tumor tissue \| Bone marrow aspirate \| Bone marrow biopsy \| Bone marrow (aspirate smear) \| Bone marrow (biopsy section) \| Peripheral blood smear slide \| Paraffin blocks \| Stained slides \| Unstained slides \| Cytology slides (stained) \| Cytology slides (unstained) \| Snap frozen tumor/tissue \| Blood \| JT-Other \| JR-Buccal Scrapings \| JL-Saliva \| JC-CSF \| JH-Punch \| JF-Fresh Tissue \| JB-Paraffin Block \| JN-Unstained Slides \| JU-Urine \| JW-Whole Blood \| JX-Buffy \| JP-Plasma \| JS-Serum \| Fresh Frozen Tumor Tissue \| Peripheral blood-Frozen \| Peripheral blood-Fresh \| Plasma \| Nipple Aspirate Fluid \| Breast Adipose Tissue \| DNA \| Frozen metastatic tissue \| None \| Cells \| Whole blood (7-10 mL green top tube) \| Plasma (from blood collected in 10 mL lavender top tube) \| Bone marrow smear \| Formalin fixed paraffin embedded tissue block \| Punch biopsies from FFPE block \| Unstained superfrost plus slides \| Whole blood \| Buffy coat \| Fixed tissue \| Frozen tissue \| Tumor block \| Whole venous blood \| Citrated plasma \| EDTA plasma \| Tissue
Specimen - 2177026	2722734v3	Other, specify	Specimen Therapeutic Effect	the free-text field to specify the pathologic change in the specimen tissues that show evidence of treatment with cancer therapy prior to collection of the specimen.
Specimen - 2177026	64781v3	Does analysis of tissue show evidence of therapeutic effects?	Specimen Therapeutic Effect Ind-3	the yes/no indicator that asks whether a pathologic specimen tissues show evidence of treatment with cancer therapy prior to collection of the specimen.	No \| Yes \| Unknown
Specimen - 2177026	2548397v1	Evidence of therapeutic effects?	Specimen Therapeutic Effect Type	Terms to identify evidence of therapeutic effects on a specimen's histologic findings.	No \| Apocrine/eosinophilic \| Hystiocytoid \| Cytoplasmic vacuolation \| Lobular appearance \| Other
Specimen - 2177026	65085v3	Percent of Tissue Examined	Specimen Tissue Examined Percentage Amount	the measurement by percentage of the amount of tumor tissue examined and analyzed for cancer cells.
Specimen - 2177026	2178123v1	Is specimen a microdissected tissue specimen?	Specimen Tissue Microdissected Code	TBD	1 \| 0 \| 9 \| 3
Specimen - 2177026	2178261v1	Associated pre-invasive neoplastic changes:	Specimen Tissue Pre-invasive Neoplastic Change Code	TBD	999 \| 97 \| 4 \| 12 \| 11 \| 1 \| 2 \| 3 \| 5 \| 6 \| 7 \| 8 \| 9 \| 10
Specimen - 2177026	2178262v1	Associated pre-invasive neoplastic changes: (Other, specify)	Specimen Tissue Pre-invasive Neoplastic Change Other Text	TBD
Specimen - 2177026	2178266v1	Method of preservation	Specimen Urine Preservation Code	TBD	9 \| 8 \| 1 \| 2
Specimen - 2177026	2178197v1	Time period of original urine collection, specify	Specimen Urine Time Period Other Text	TBD
Specimen - 2177026	2190876v1	Other, specify	Speciment Biological Storage Specify	the specified type of biological storage of a specimen.
Specimen - 2177026	2192810v1	Reason for Submission	Submission Reason Description Text	The description indicating the reason for the specimen submittal.	1st Submission While On Study \| Subsequent Submission While On Study
Specimen - 2177026	2502965v1	Specimen	Tissue Specimen Submitted Type	The type of tissue specimen submitted.	Fresh Frozen Surgical Specimen \| 2 H&E Stained Representative Slides \| 1 paraffin embedded tissue block
Specimen - 2177198	2003907v3	Description of Sample	Sample Description Text	Text description of a sample or specimen.
Specimen - 2177198	2222728v1	Sample Type	Sample Source Text Name	Text name of cell source from which a sample was secured.	Buccal Smear \| Serum \| Sputum \| N/A \| Bronchial Washing \| Buccal Brushing \| NPBL \| Pleural \| Saliva \| Tissue \| NAF \| Ductal Epithelial Cells
Specimen - 2177198	3364862v1	Was a specimen (whole blood or plasma and PBMC) collected APOBEC3G and/or KSHV Viral Load	Specimen APOBEC3G Gene Human Herpesvirus 8 Collection Ind-2	the yes/no question related to collection of specimen for a gene which may play a role in cell growth and the cell cycle or a gammaherpesvirus that contributes to the development of Kaposi sarcoma.	No \| Yes
Specimen - 2177198	3364868v1	Please specify the reason	Specimen APOBEC3G Gene Human Herpesvirus 8 Negation Collection Reason	an explanation related to not collecting specimen for a gene which may play a role in cell growth and the cell cycle or a gammaherpesvirus that contributes to the development of Kaposi sarcoma.	Not required per protocol \| Other \| Participant refused \| Specimen lost on site \| Specimen ruined shortly after collection \| Scheduling error
Specimen - 2177198	3364869v1	Other, specify	Specimen APOBEC3G Gene Human Herpesvirus 8 Negation Collection Specify	the free-text field related to not collecting specimen for a gene which may play a role in cell growth and the cell cycle or a gammaherpesvirus that contributes to the development of Kaposi sarcoma.
Specimen - 2177198	2178272v1	Age at specimen collection	Specimen Age Collected Value	Participant's age in years at the time of specimen collection.
Specimen - 2177198	2178287v1	Number of aliquots/slides stored	Specimen Aliquots Slides Stored Value	TBD
Specimen - 2177198	2178200v1	Approximate total amount remaining unit	Specimen Amount Remaining Unit Code	Unit of quantity of specimen currently available at site.	3 \| 8 \| 4 \| 5 \| 6 \| 7 \| 2 \| 1
Specimen - 2177198	2178271v1	Approximate total amount remaining	Specimen Amount Remaining Value	Quantitative value of specimen currently available at site.
Specimen - 2177198	2178215v1.1	Approximate total amount stored (Unit)	Specimen Amount Stored Unit Code	Unit of the quantity of specimen originally stored.	3 \| 8 \| 4 \| 5 \| 6 \| 7 \| 2 \| 1
Specimen - 2177198	2178286v1	Approximate total amount stored	Specimen Amount Stored Value	Quantitative value of specimen originally stored.
Specimen - 2177198	2178121v1	Specimen available	Specimen Available Code	Flag to determine if there is some specimen available/remaining at the site.	1 \| 0 \| 9 \| 3
Specimen - 2177198	2178277v1	Cell Count	Specimen Bone Marrow Cell Count Value	The number of cells (in millions) in a stored cell specimen taken from bone marrow.
Specimen - 2177198	2178276v1	Percentage of Blast cells	Specimen Bone Marrow Plasma Value	Percentage of plasma cells of the total cells stored from a bone marrow specimen collection. A plasma cell is a type of white blood cell that produces antibodies.
Specimen - 2177198	3321254v1	Will/has the LBC specimen be(en) drawn in the timeframe of 4 days before through 7 days after entry?	Specimen Cervical Occurrence Collection Ind-2	A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._Relating to a neck, or cervix, in any sense._Occurrence; an instance of something happening._The act of gathering things together; having been brought together in one place._the yes/no question related to specimen characteristics.	No \| Yes
Specimen - 2177198	3334801v1	Charged Slides Count	Specimen Charge Slide Submission Count	A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._the quantity of the specified item.
Specimen - 2177198	3334804v1	Charged Slides Thickness	Specimen Charge Slide Submission Thickness Measurement	A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._The dimension between two surfaces of an object, usually the smallest dimension as opposed to the width or the length: also, viscous consistency._Measurement; the size or magnitude of something.
Specimen - 2177198	2178284v1	Specimen collected	Specimen Collected Code	Type of specimen that was collected from participant.	16 \| 3 \| 4 \| 6 \| 11 \| 14 \| 17 \| 18 \| 19 \| 20 \| 1 \| 2 \| 5 \| 7 \| 8 \| 9 \| 10 \| 12 \| 13 \| 15
Specimen - 2177198	2178199v1	Date of specimen collection	Specimen Collection Text	Date on which the specimen was collected.
Specimen - 2177198	2178279v1	Concentration in ?g/ml	Specimen Concentration Value	Concentration of specimen stored
Specimen - 2177198	2178274v1	Number of days from specimen collected date since cancer diagnosis date	Specimen Day Cancer Diagnosis Value	Number of days between the date the cancer was diagnosed pathologically, and the date on which the tissue specimen was collected.
Specimen - 2177198	2178273v1	Number of days since 1st specimen collected	Specimen Day Collected Value	Calculated value at site in number of days. ([Specimen Collected Date]-[Date of 1st specimen collected])
Specimen - 2177198	2178288v1	Final storage	Specimen Final Store Code	Temperature specimen was ultimately stored at.	97 \| 1 \| 3 \| 4 \| 5 \| 6
Specimen - 2177198	2178194v1	Final storage (Other, specify)	Specimen Final Store Other Text	Temperature specimen was ultimately stored at that does not appear on the pick-list.
Specimen - 2177198	3357963v1	Was a specimen (PBMC or whole blood) collected for HIV DNA quantification	Specimen Human Immunodeficiency Virus DNA Collection Ind-2	the yes/no question related to collection of specimen of the long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell for the virus isolated and recognized as the etiologic agent of AIDS.	No \| Yes
Specimen - 2177198	3357969v1	Please specify the reason	Specimen Human Immunodeficiency Virus DNA Negation Collection Reason	an explanation related to not collecting specimen of the long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell for the virus isolated and recognized as the etiologic agent of AIDS.	Not required per protocol \| Other \| Participant refused \| Specimen lost on site \| Specimen ruined shortly after collection \| Scheduling error
Specimen - 2177198	3357970v1	Other, specify	Specimen Human Immunodeficiency Virus DNA Negation Collection Specify	the free-text field related to not collecting specimen of the long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell for the virus isolated and recognized as the etiologic agent of AIDS.
Specimen - 2177198	3357897v1	Was a specimen (plasma or whole blood) collected for HIV-1 RNA levels	Specimen Human Immunodeficiency Virus Ribonucleic Acid Collection Ind-2	the yes/no question related to collection of specimen of the single-stranded long chain of nucleotides containing ribose for the virus isolated and recognized as the etiologic agent of AIDS.	No \| Yes
Specimen - 2177198	3357898v1	Please specify the reason	Specimen Human Immunodeficiency Virus Ribonucleic Acid Negation Collection Reason	An explanation related to not collecting specimen of the single-stranded long chain of nucleotides containing ribose for the virus isolated and recognized as the etiologic agent of AIDS.	Not required per protocol \| Other \| Participant refused \| Specimen lost on site \| Specimen ruined shortly after collection \| Scheduling error
Specimen - 2177198	3357959v1	Other, specify	Specimen Human Immunodeficiency Virus Ribonucleic Acid Negation Collection Specify	the free-text field related to not collecting specimen of the single-stranded long chain of nucleotides containing ribose for the virus isolated and recognized as the etiologic agent of AIDS.
Specimen - 2177198	3365921v1	Was a specimen (plasma) collected for Single Copy HIV Viral Load	Specimen Human Immunodeficiency Virus Single Copy Viral Load Collection Ind-2	the yes/no question related to collecting a specimen for a single copy of number of viral particles in a sample of blood plasma of the cytopathic retrovirus.	No \| Yes
Specimen - 2177198	3365922v1	Please specify the reason	Specimen Human Immunodeficiency Virus Single Copy Viral Load Negation Collection Reason	an explanation related to not collecting a specimen for a single copy of number of viral particles in a sample of blood plasma of the cytopathic retrovirus.	Not required per protocol \| Other \| Participant refused \| Specimen lost on site \| Specimen ruined shortly after collection \| Scheduling error
Specimen - 2177198	3365923v1	Other, specify	Specimen Human Immunodeficiency Virus Single Copy Viral Load Negation Collection Specify	the free-text field specifying information related to not collecting a specimen for a single copy of number of viral particles in a sample of blood plasma of the cytopathic retrovirus.
Specimen - 2177198	2183027v2	Biopsy Specimen Numbers Biopsy Specimen Numbers	Specimen Identifier Number	The number indicating the sample.
Specimen - 2177198	3364876v1	Was a specimen (tissue punch biopsy) collected for Immunohistochemistry	Specimen Immunohistochemical Test Collection Ind-2	the yes/no question related to collection of specimen for a diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope.	No \| Yes
Specimen - 2177198	3364877v1	Please specify the reason	Specimen Immunohistochemical Test Negation Collection Reason	an explanation related to not collecting a specimen for a diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope.	Not required per protocol \| Other \| Participant refused \| Specimen lost on site \| Specimen ruined shortly after collection \| Scheduling error
Specimen - 2177198	3364878v1	Other, specify	Specimen Immunohistochemical Test Negation Collection Specify	the free-text field to specify as related to not collecting a specimen for a diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope.
Specimen - 2177198	2178291v1	Embedding material used?	Specimen Preparation Embed Code	Indication of embedding material used in processing cells or tissue prior to storage.	7 \| 1 \| 2
Specimen - 2177198	2178196v1	Embedding material used (Other, specify)?	Specimen Preparation Embed Other Text	TBD
Specimen - 2177198	2178290v1	If fixed, Fixative used?	Specimen Preparation Fixative Code	Indication of the fixative used in fixing the tissue specimen or cells collected.	7 \| 1 \| 2 \| 3
Specimen - 2177198	2178195v1	If fixed, Fixative used (Other, specify)?	Specimen Preparation Fixative Other Text	TBD
Specimen - 2177198	2178289v1	Method of preparation	Specimen Preparation Method Code	TBD	97 \| 3 \| 1 \| 2
Specimen - 2177198	2178213v1	Method of preparation (Other, specify)	Specimen Preparation Method Other Text	Indication of how the cells or tissue were prepared prior to storing, other than the methods listed in the pick-list.
Specimen - 2177198	3073066v2	Was submitted sample prior to ANY radiation or drug therapy?	Specimen Prior Intervention Submitted Indicator	Records if sample was obtained prior to ANY radiation or drug treatment.	Data Not Available \| Unknown \| Yes \| No
Specimen - 2177198	3364890v1	Was a specimen (tissue punch biopsy) collected for RNA Isolation	Specimen Ribonucleic Acid Collection Ind-2	the yes/no question related to collecting a specimen for a single-stranded long chain of nucleotides containing ribose.	No \| Yes
Specimen - 2177198	3364888v1	Please specify the reason	Specimen Ribonucleic Acid Negation Collection Reason	an explanation related to not collecting a specimen for a single-stranded long chain of nucleotides containing ribose._	Not required per protocol \| Other \| Participant refused \| Specimen lost on site \| Specimen ruined shortly after collection \| Scheduling error
Specimen - 2177198	3364889v1	Other, specify	Specimen Ribonucleic Acid Negation Collection Specify	the free-text field related to not collecting a specimen for a single-stranded long chain of nucleotides containing ribose.
Specimen - 2177198	2912070v1	Sample Type	Specimen Sampled Source Type	Text name of cell source from which a sample was secured.	Non-lung specimen \| Washing/Lavage \| Lung resection/FNA \| Brushing \| Sputum \| Biopsy from bronch
Specimen - 2177198	3228020v1	Sample Type	Specimen Sampled Type	Text descriptor of body fluid or tissue being sampled.	Pleural Effusion \| Serum \| Whole Blood \| Urine \| Saliva \| Hair \| CD33 Myeloid Cells \| CD3 Lymphoid Cells \| Bone Marrow \| Apheresis Cells \| Abdominal Effusion \| Peripheral Blood Mononuclear Cells (PBMC) \| Circulating Tumor Cells \| Tumor Tissue \| Pericardial Effusion \| Normal Tissue \| Pax Gene RNA \| Lymph Node \| Leukocytes (White Blood Cells) \| Cerebrospinal Fluid (CSF) \| Cell Block \| CD14/CD15 Myeloid Cells \| Macrophages \| Lymphocytes \| Natural Killer Cells (NK Cells) \| CD4 Cells \| Stool \| Fresh Tissue \| Archival Tissue \| Plasma
Specimen - 2177198	2004162v4	Specimen Sampled	Specimen Sampling Type	Type of specimen/body tissue being sampled, using an enumerated set of values.	N \| R \| F \| E \| W \| H \| G \| J \| Z \| B \| S \| P \| C \| U \| M \| A \| O \| Y \| L \| D \| T \| V
Specimen - 2177198	2178119v1	Was blood present in stool sample	Specimen Stool Blood Present Code	TBD	1 \| 0 \| 9 \| 3
Specimen - 2177198	2178117v1	Was sample collected using a bowel prep	Specimen Stool Bowel Prep Code	TBD	1 \| 0 \| 9 \| 3
Specimen - 2177198	2178267v1	If yes, number of days since bowel prep	Specimen Stool Days Bowel Prep Value	TBD
Specimen - 2177198	2178268v1	Morphology of sample	Specimen Stool Morphology Code	TBD	1 \| 2 \| 3 \| 5 \| 4
Specimen - 2177198	2178118v1	Was sample tested for presence of occult blood?	Specimen Stool Occult Blood Code	TBD	1 \| 0 \| 9 \| 3
Specimen - 2177198	2178285v1	Specimen stored (type)	Specimen Stored Code	Type of specimen ultimately stored after processing the specimen that was collected.	18 \| 1 \| 2 \| 3 \| 4 \| 5 \| 6 \| 7 \| 8 \| 9 \| 10 \| 11 \| 12 \| 13 \| 14 \| 15 \| 16 \| 17 \| 19 \| 20 \| 21 \| 22 \| 23 \| 24 \| 25 \| 26 \| 27
Specimen - 2177198	2220480v1	Method	Specimen Testing Method Text Name	Text name for testing method used on samples and specimens.	Biochemical \| Immunohistochemical \| Immunohistochemical and FISH
Specimen - 2177198	2178281v1	Method of acquisition	Specimen Tissue Acquisition Method Code	TBD	97 \| 1 \| 2 \| 3 \| 4
Specimen - 2177198	2178205v1	Method of acquisition (Other,specify)	Specimen Tissue Acquisition Other Text	TBD
Specimen - 2177198	2178206v1	Anatomical site	Specimen Tissue Anatomical Site Code	TBD	999 \| 97 \| 13 \| 1 \| 5 \| 14 \| 22 \| 25 \| 15 \| 16 \| 17 \| 18 \| 19 \| 20 \| 21 \| 2 \| 3 \| 4 \| 6 \| 7 \| 8 \| 9 \| 10 \| 11 \| 12
Specimen - 2177198	2178122v1	Angiogenic changes present?	Specimen Tissue Angiogenic Change Code	TBD	1 \| 0 \| 9 \| 3
Specimen - 2177198	2178275v1.1	Degree of invasiveness	Specimen Tissue Degree Invasive Code	Degree to which neoplasm has the ability to infiltrate and actively destroy surrounding tissue.	3 \| 4 \| 5 \| 6 \| 7 \| 1
Specimen - 2177198	2178202v1	If Pre-invasive neoplasia, specify:	Specimen Tissue Degree Invasive Neoplasia Code	TBD	1 \| 2 \| 3
Specimen - 2177198	2178280v1.1	If invasive tumor, specify	Specimen Tissue Degree Invasive Tumor Code	Type of invasive tumor.	9 \| 1 \| 2
Specimen - 2177198	2178203v1	Histologic classification (WHO)	Specimen Tissue Histologic Classification Code	TBD	14 \| 15 \| 16 \| 17 \| 18 \| 19 \| 20 \| 21 \| 22 \| 23 \| 24 \| 25 \| 26 \| 27 \| 28 \| 29 \| 30 \| 31 \| 32 \| 33 \| 34 \| 999 \| 13 \| 97 \| 1 \| 2 \| 3 \| 4 \| 5 \| 6 \| 7 \| 8 \| 9 \| 10 \| 11 \| 12
Specimen - 2177198	2178204v1	Histologic classification (WHO) (Other, specify)	Specimen Tissue Histologic Classification Other Text	TBD
Specimen - 2177198	2178209v1	Histologic classification (WHO), (Mixed epithelial carcinoma, specify components)	Specimen Tissue Histologic Combined/Mixed Text	TBD
Specimen - 2177198	2178260v1	Histologic grade (WHO):	Specimen Tissue Histologic Grade Code	TBD	9 \| 999 \| 1 \| 2 \| 3 \| 4 \| 5 \| 6
Specimen - 2177198	2178212v1	Histologic classification (WHO), (Mixed malignant germ cell tumor, specify components)	Specimen Tissue Histologic Mixed Malignant Text	TBD
Specimen - 2177198	2178210v1	Histologic classification (WHO), (Mixed epithelial carcinoma, specify components)	Specimen Tissue Histologic Mixed/Epithelial Text	TBD
Specimen - 2177198	2178211v1	Histologic classification (WHO), Teratoma immature, specify components)	Specimen Tissue Histologic-Teratoma Text	TBD
Specimen - 2177198	2178207v1	If lymph node, specify	Specimen Tissue Lymph-Node Code	TBD	999 \| 97 \| 1 \| 2 \| 3 \| 4 \| 8 \| 5 \| 6 \| 7
Specimen - 2177198	2178208v1	If lymph node, specify (Other, specify)	Specimen Tissue Lymph-Node Text	TBD
Specimen - 2177198	2178214v1.2	Organ site	Specimen Tissue Organ Site Code	Body organ/site the specimen was taken from.	97 \| 1 \| 5 \| 14 \| 25 \| 2 \| 3 \| 4 \| 6 \| 7 \| 8 \| 9 \| 10 \| 12 \| 15 \| 16 \| 17 \| 19 \| 20 \| 21 \| 24 \| 23 \| 26
Specimen - 2177198	2178201v1	Organ site, specify	Specimen Tissue Organ Site Other Text	Body organ/site the specimen was taken from that does not appear on the pick-list.
Specimen - 2177198	3326456v1	Indicate the level/status that was determined centrally and reported to you.	Specimen Tumor Marker Central Pathology Review Status	the status of the outcome of the process by which specimens are sent to a central lab for confirmatory analysis for tumor markers using standardized methods and result criteria in order to minimize inter-reviewer differences thereby improving the accuracy of pathology data.	3 - Undeterminable \| 2 - One or both intact \| 1- lp and 19q deleted
Specimen - 2185468	2200800v1	Deep Margins	Specimen Deep Margin Status Type	Text represenation to describe the status of the deep margins of a specimen.	Negative \| Positive Cancer \| Positive Dysplasia
Specimen - 2185468	2200794v1	Enface Margins	Specimen Enface Margin Status Type	Text represenation to describe the status of the enface (facing) margins of a specimen.	Negative \| Positive Cancer \| Positive Dysplasia
Specimen - 2185468	2200797v1	Radial Margins	Specimen Radial Margin Status Type	Text represenation to describe the status of the radial (along the central axis of the body) margins of a specimen.	Negative \| Positive Cancer \| Positive Dysplasia
Specimen - 2192308	2183043v1	Date Specimen Analyzed	Specimen Analyzed Date	The date the specimen was analyzed.
Specimen - 2192920	2192919v1	Required Materials	Blood Specimen Submission Materials Required Type	The materials required for a blood specimen submission.	1 Tube Frozen
Specimen - 2192920	2192955v1	Required materials	Pathology Slide Submission Materials Required Type	Identifiying the types of materials required for a pathology slide submission.	Copy of Pathology Report \| Copy of Operative Report \| 3 Permanent Tissue Sectioned Slides \| Anatomic Location of Tissue Collection
Specimen - 2192920	2261856v1	Number of samples analyzed (total)	Specimen Analysis Count	Numeric count of the total number of tissue samples/specimens analyzed.
Specimen - 2192920	2261844v1	Number of patients from whom samples have been analyzed	Specimen Analysis Patient Count	Numeric count of the number of patients from whom tissue samples have been analyzed.
Specimen - 2192920	2192951v1	Are blocks available for future studies?	Specimen Blocks Future Indicator	A yes/no/unknown response to a question that asks whether blocks are available for future studies.	Unknown \| Yes \| No
Specimen - 2192920	3308922v1	Date block sent	Specimen Blocks Submission Date	Calendar date on which a specimen block was sent to another organization (or its laboratory).
Specimen - 2192920	2192947v1	Are blocks included in this submission?	Specimen Blocks Submission Indicator	A yes/no/unknown response to a question that asks whether blocks are included in the submission.	Unknown \| Yes \| No
Specimen - 2192920	2192926v1	Required materials	Specimen Materials Required Indicator	A yes/no response to a question that asks whether or not a specific specimen material is required.	No \| Yes
Specimen - 2192920	2192929v1	Required materials	Tissue Frozen Specimen Submission Materials Required Type	Materials required in a frozen tissue submission.	1 - 10 Vials Frozen Tissue \| Copy of Pathology Report \| Copy of Operative Report \| Anatomic Location of Tissue Form
Specimen - 2241613	3664650v1	Specimen Label	Blood Specimen Label Type	The type of blood specimen label.	8ml CPT tube \| 2.5ml RNA Paxgene \| 3ml greentop
Specimen - 2241613	3220470v1	Type of Blood Sample	Blood Specimen Source	The source of the blood sample.	Blood Draw \| Scavenge
Specimen - 2241613	3219459v1	Specimen Type	Blood Specimen Type	The type of the blood specimen.	P \| HS \| V \| A \| Unknown
Specimen - 2241613	2506815v1	Specimen Type	Blood Specimen Type	The name of the blood specimen.	Estrone \| Estradiol \| Testosterone \| PSA (total, free) \| PSA (total) \| PSA (free) \| Dihydrotestosterone
Specimen - 2241613	3219439v1	Blood Volume	Blood Specimen Volume	The volume of the blood sample.
Specimen - 2241613	2555521v1		Specimen Accession Number java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A control number unique to an object, used to identify it among the other objects in a collection._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2513680v1		Specimen Activity Status Activity Status Text Type	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The state of being active; any specific activity.:A condition or state at a particular time._An action taken in pursuit of an objective; the state of being active._A condition or state at a particular time._Text; the words of something written._Type; a subdivision of a particular kind of thing.	Disable \| Active \| Close
Specimen - 2241613	2553320v1		Specimen Activity Status java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The state of being active; any specific activity.:A condition or state at a particular time._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2241622v1	Were specimen(s) submitted to the ACOSOG Central Specimen Bank	Specimen American College of Surgeons Oncology Group Submitted Ind-2	the yes/no indicator that asks whether specimen(s) were submitted to the ACOSOG Central Specimen Bank.	No \| Yes
Specimen - 2241613	2453234v1	Time Specimen Analyzed	Specimen Analyzed Time	The time the specimen was analyzed.
Specimen - 2241613	2008276v2	Anterior-deep specimen dimension (cm)	Specimen Anterior Posterior Centimeter Measurement	Numeric value to represent the anterior-posterior dimension of a specimen.
Specimen - 2241613	2547692v1	Time of Specimen Arrival in Pathology	Specimen Arrival In Pathology Time	The time the specimen arrived in pathology.
Specimen - 2241613	2830254v1		Specimen Available Quantity java.lang.Double	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Available; obtainable or accessible and ready for use or service.:Quantity; how much there is of something that you can measure._Generic value domain for a primitive java datatype that is a Double-precision floating point number (64-bit IEEE 7540).
Specimen - 2241613	2513676v1		Specimen Available java.lang.Boolean	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Available; obtainable or accessible and ready for use or service._Generic value domain for a primitive java datatype that is a Boolean value (true or false).
Specimen - 2241613	2513679v1		Specimen Barcode java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A machine-readable representation of information in a visual format on a surface. Originally barcodes stored data in the widths and spacings of printed parallel lines, but today they also come in patterns of dots, concentric circles, and hidden in images (Wikipedia)._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2470366v1	Date Baseline Surgical Gleason Score Obtained	Specimen Baseline Gleason Score Date	the date when prostate gland tissue is collected at the start of a clinical trial to identify existing microscopic patterns of cancerous glands and morphology with the Gleason grading system.
Specimen - 2241613	3153685v1	Specimen Type	Specimen Biospecimen Type	The name that describes material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions.	Serum Ca 15-3 \| Serum CRP \| Research blood
Specimen - 2241613	2715529v1		Specimen Biospecimen Type HL7.ConceptDescriptor	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The type of a material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes. This includes particular types of cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory substances._Generic value domain for HL7 concept descriptors that represent any kind of concept usually by giving a code defined in a code system.
Specimen - 2241613	2859489v1	Accession Number including a block number	Specimen Block Accession Number	the control number and unique section identifier for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination, with or without an enhancement such as staining.
Specimen - 2241613	2859529v1	Is the accession number (including block number) of the block used to determine the IHC HER2 result available	Specimen Block Accession Number Immunohistochemistry Staining Method HER2/neu Block Accession Number Present Ind-2	the yes/no indicator whether the control number and unique section identifier are present for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination, with or without an enhancement, using immunohistochemical staining techniques (allow for the visualization of antigens via the sequential application of a specific antibody to the antigen (primary antibody), a secondary antibody to the primary antibody and an enzyme complex with a chromogenic substrate) to determine HER2 (the ERBB2 Gene at 17q21.1 encodes ERRB2 Receptor Protein Tyrosine Kinase, a 185 kD type I membrane glycoprotein that controls cell growth with features similar to EGFR. Ligand binding increases phosphorylation of tyrosine residues) status.	No \| Yes
Specimen - 2241613	3025051v1	Number of Blocks	Specimen Block Received Count	Numeric value to represent the number of specimen blocks received by an institution or organization.
Specimen - 2241613	3308921v1	Date block obtained	Specimen Block Received Date	Calendar date on which a specimen block was received from the laboratory of an organization.
Specimen - 2241613	1744v2.31	Specimen Block Count	Specimen Block Submission Count	the number of specimen blocks submitted.
Specimen - 2241613	2913992v1	Number Blocks/Slides	Specimen Blocks Slide Submission Count	the quantity of a preserved bit of tissue or blood or urine submitted for research purposes on block or slide.
Specimen - 2241613	2990413v1	Were slides/paraffin blocks able to be sent?	Specimen Blocks Slide Submission Indicator	Text term to indicate that biospecimen tissue blocks or slides were prepared and submitted for review and evaluation.	Yes \| No
Specimen - 2241613	2178254v1	Additive used in blood collection?	Specimen Blood Additive Code	TBD	97 \| 99 \| 1 \| 2 \| 3 \| 4
Specimen - 2241613	2178255v1	Additive used in blood collection (other, specify)	Specimen Blood Additive Other Text	TBD
Specimen - 2241613	2178258v1	Original blood sample was collected as:	Specimen Blood Collected as Code	TBD	9 \| 1 \| 2
Specimen - 2241613	2178265v1	Time period of original urine collection	Specimen Blood Fast Code	TBD	9 \| 1 \| 2
Specimen - 2241613	2178256v1	If Heparin, specify:	Specimen Blood Heparin Code	TBD	97 \| 99 \| 1 \| 2 \| 3
Specimen - 2241613	2178257v1	If Heparin, specify (other, specify):	Specimen Blood Heparin Other Text	TBD
Specimen - 2241613	2719843v1	ER status by central pathology review	Specimen Breast Carcinoma Estrogen Receptor Status Cental Pathology Review Status	th status or objective appraisal by a centralized laboratory of the estrogen receptor level measured in a primary tumor or in metastases tissue specimen taken from a carcinoma arising from the breast according to standardized procedures and results.	Negative \| Positive \| Unknown \| NOT DONE
Specimen - 2241613	2719848v1	PgR status by central pathology review	Specimen Breast Carcinoma Progesterone Receptor Status Cental Pathology Review Status	th status or objective appraisal by a centralized laboratory of the progesterone receptor level measured in a primary tumor or in metastases tissue specimen taken from a carcinoma arising from the breast according to standardized procedures and results.	Negative \| Positive \| Unknown \| NOT DONE
Specimen - 2241613	2719842v1	Was marker status changed by central pathology review	Specimen Breast Carcinoma Tumor Marker Change Cental Pathology Review Ind-2	the yes/no indicator whether there was a change in the presence or status of a tumor maker found in a primary tumor or in metastases tissue specimen taken from a carcinoma arising from the breast through the systematic, objective appraisal by a centralized laboratory according to standardized procedures and results.	No \| Yes
Specimen - 2241613	64335v3	Bronchus specify	Specimen Bronchus Cell Source Specify	a text field to describe a source or location from which a tissue or fluid sample is taken to examine cellular composition of the large air passages that lead from the trachea to the lungs.
Specimen - 2241613	2727273v1		Specimen CaBIG Identifier java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A globally unique identifier deployed by systems that are compatible with the caGrid._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2897734v1	Cellularity	Specimen Cellularity Category	Category to represent the percent of the tissue in a sample that is occupied by the solid tissue normal.	low \| medium \| high \| unknown
Specimen - 2241613	2940273v1	Date results received from Central Lab	Specimen Central Laboratory Result Received Date	the date results were received from a Central Lab.
Specimen - 2241613	2003948v3	Date material(s) sent to central laboratory	Specimen Central Laboratory Submission Date	the date a specimen or related material was sent to the Central Lab.
Specimen - 2241613	3379234v1	CSF collection time point:	Specimen Cerebrospinal Fluid Collection Timepoint Type	A specific point in the time continuum, including those established relative to an event where a portion of the fluid flowing around the brain and spinal cord obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.	Not collected \| After intraventricular irrigation \| Before intraventricular irrigation \| After tumor biopsy \| Before tumor biopsy
Specimen - 2241613	3321248v1	Will/has a liquid-based cytology (LBC) specimen be(en) collected 7 days or more after the diagnosis of AGC?	Specimen Cervical Collection Ind-2	A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._Relating to a neck, or cervix, in any sense._The act of gathering things together; having been brought together in one place._the yes/no question related to specimen characteristics.	No \| Yes
Specimen - 2241613	2773214v1		Specimen Change Date java.util.Date	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of alteration or modification; changed or altered in form or character.:The particular day, month and year an event has happened or will happen._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision.
Specimen - 2241613	2919624v1		Specimen Class Specimen Class Text Type	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Class; a collection of things sharing a common attribute._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Class; a collection of things sharing a common attribute._Text; the words of something written._Type; a subdivision of a particular kind of thing.	Fluid \| Cell \| Molecular \| Tissue
Specimen - 2241613	2897125v1	Planned Time of Collection	Specimen Collected Expected Time	the planned or expected collection time of a specimen or sample.
Specimen - 2241613	2913986v1	Visit date	Specimen Collected Last Occurrence Date	the date during which a specimen was last collected.
Specimen - 2241613	2529078v1		Specimen Collection Method java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of gathering something together.:The mode or manner or orderly sequence of events of a process or procedure. (from STED98)_Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2683524v1	Specify Time Point(s)	Specimen Collection Period Frequency	The time period in which a bit of tissue, blood or urine that is taken or used for research purposes was gathered.	24.0 hours \| 20.0 hours \| 16.0 hours \| 12.0 hours \| 8.0 hours \| 6.0 hours \| 4.0 hours \| 3.0 hours \| 2.5 hours \| 2.0 hours \| 1.5 hours \| 1.0 hours \| 0.75 hours \| 0.5 hours \| 0.25 hours \| 4-8 hours \| 0-2 hours \| Prior to agent administration \| 8-24 hours \| 2-4 hours
Specimen - 2241613	2004542v3	Specimen type	Specimen Collection Period Interval	a protocol-specific period or interval when a specimen is collected for banking or analysis.	Baseline Specimen \| 6-month Specimen
Specimen - 2241613	64333v4	Other specify	Specimen Collection Period Specify	the free-text field to describe some other timeframe of specimen collection.
Specimen - 2241613	2003953v3	Timing of material collection	Specimen Collection Period Type	the time/treatment period in which a specimen was collected.	Cycle 1, Day 28 \| Post-Treatment \| Week 24 \| Week 25 \| Day 30 \| Day 15 +/- 2 \| Cycle 3, Day 1 \| Post-Surgery \| Prior to initiation of protocol therapy \| Prior to radical prostatectomy \| Baseline/pretreatment \| Discontinuation of protocol treatment \| Stem cell harvest \| Pre-Study \| Pre-Transplant remission prior to consolidation \| Pre-Transplant, post-consolidation chemotherapy \| Day 2 \| After 1st chemo regimen \| After 2nd chemo regimen \| Day 50/57 \| Day 85 \| Day 176 \| Day 260 \| Day 29 \| Prior to Nephrectomy \| Nephrectomy \| Cycle 1, Day 1 \| Day 169 \| Day 253 \| Time of disease progression/end of study \| Cycle 2, day 1 \| Cycle 4, day 1 \| First relapse \| First complete remission \| Hour 6 \| Hour 8 \| Hour 1 \| Hour 2 \| Hour 3 \| Hour 4 \| Hour 5 \| An additional time point \| A regularly scheduled time point \| In systemic therapy arm follow-up OFF systemic therapy \| In systemic therapy arm follow-up on systemic therapy \| During post-operative follow-up OFF systemic therapy \| During post-operative follow-up on systemic therapy \| Six weeks after completion of operation \| Immediately after completion of operation \| Hour 7 \| Day 42 \| Day 38 \| Day 35 \| Day 32 \| Hour 24 \| Pre-Baseline \| Other \| Surgery \| Week 8 \| 72-96 hour specimen \| 48-72 hour specimen \| 24-48 hour specimen \| Baseline \| Week 13 \| Progression \| 1 mo. Post-transplant \| 6 mos. Post-transplant \| 12 mos. Post-transplant \| Week 12 \| Relapse \| Recurrence \| 3-6 hours \| 1-3 hours \| 0.5-1 hours \| Day 1 treatment cycle 2 \| Day 1 treatment cycle 1 \| Core 3 \| Core 7 \| Core 6 \| Core 5 \| Core 4 \| Visit 1 \| Visit 2 \| Visit 3 \| Core 2 \| Biopsy \| Upon development of MDS \| End of treatment \| Initial diagnosis \| Day 8 \| Day 15 \| Day 22 \| Prostatectomy \| Week 4 \| At restaging \| At time of cetuximab-infusion reactions \| End of protocol therapy \| Month 3 \| Month 6 \| Day 8 +/- 2 \| Pre-Surgery \| Pre-Treatment \| Month 15
Specimen - 2241613	2783931v1		Specimen Collection Status SpecimenCollectionStatus	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of gathering things together; having been brought together in one place.:A condition or state at a particular time._Status of collection of specimen	pending \| notCollected \| overdue \| collected
Specimen - 2241613	2423037v1		Specimen Comment java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A written explanation or criticism or illustration that is added to a book or other textual material._Value Domain for java language String datatype.
Specimen - 2241613	2191156v1	Unsatisfactory, specify	Specimen Condition Received Specify	the free-text field to specify the condition in which a specimen was received.
Specimen - 2241613	2555522v1		Specimen Condition java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A state of being, such as a state of health or physical being._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2185894v1	Biopsy proven?	Specimen Confirmation Biopsy Ind-2	the yes/no indicator whether a confirmed biopsy specimen was taken.	No \| Yes
Specimen - 2241613	2940265v1	Will patient rebiopsy at the 4 week visit	Specimen Confirmation Biopsy Indicator	the indicator relating to whether the patient will have a repeat biopsy.	Unknown \| N/A \| Yes \| No \| Continuing \| Not Applicable
Specimen - 2241613	2423041v1		Specimen Created By java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Indicates the person or authoritative body who brought the item into existence._Value Domain for java language String datatype.
Specimen - 2241613	2612992v1		Specimen Created Date java.util.Date	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Brought into existence.:The particular day, month and year an event will happen or has happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision.
Specimen - 2241613	3623740v1	Date Specimen was Decanted and Centrifuged	Specimen Decanted And Centifuged Date	The date on which the specimen was decanted and centrifuged.
Specimen - 2241613	2423036v1		Specimen Description java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A statement or an account describing something._Value Domain for java language String datatype.
Specimen - 2241613	2773215v1		Specimen Display Name java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Exhibit, present, or demonstrate for viewing.:The words or language units by which a thing is known._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	3005039v1	Elapsed time from surgical clamp of blood supply to fixation	Specimen Elapsed Time Surgical Procedure Clamping Fixative Duration	the elapsed time from the surgical clamp of blood supply to fixation of tissues or cells for microscopic study.
Specimen - 2241613	3005041v1	Was the fixation performed within 20 minutes of the surgical clamp of blood supply	Specimen Elapsed Time Surgical Procedure Clamping Fixative Ind-3	the yes/no/unknown indicator that asks whether the fixation was performed within a specified amount of time after the surgical clamp of blood supply.	No \| Yes \| Unknown
Specimen - 2241613	2897700v1	% Eosinophils	Specimen Eosinophilia Percentage Value	Numeric value to represent the percentage of infiltration by eosinophils in a tumor sample or specimen.
Specimen - 2241613	2859527v1	Is the accession number (including block number) of the block used to determine the ER/PgR result available	Specimen Estrogen Receptor Progesterone Receptor Block Accession Number Present Ind-2	the yes/no indicator whether the control number and unique section identifier were present for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination and used to determine estrogen receptor (widely expressed human Estrogen Receptors (NR3 Family) are cytoplasmic hormone-activated receptors that act as nuclear transcription factors composed of an N-terminal transcription activation/modulation domain, a DNA-binding domain, and a C-terminal steroid-binding domain) and progesterone receptor (specific proteins found in or on cells of progesterone target tissues that specifically combine with progesterone. The cytosol progesterone-receptor complex then associates with the nucleic acids to initiate protein synthesis) status.	No \| Yes
Specimen - 2241613	2711768v1		Specimen Experiment Identifier java.lang.Long	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._In the scientific method, an experiment is a set of actions and observations, performed to verify or falsify a hypothesis or research a causal relationship between phenomena. The experiment is a cornerstone of the empirical approach to knowledge. (from Wikipedia):One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement).
Specimen - 2241613	2519442v1		Specimen Expiration Date and Time java.util.Date	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._To come to a close or end of useable period; termination.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision.
Specimen - 2241613	2727168v1		Specimen External Identifier java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Happening or arising or located outside or beyond some limits, or especially, some surface.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2513677v1		Specimen First Dimension Position java.lang.Integer	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Preceding all others in time or space or degree.:The magnitude of something in a particular direction, especially length or width or height.:The particular portion of space occupied by a physical object._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement).
Specimen - 2241613	3101109v1		Specimen Flag Availability java.lang.Boolean	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An indicator that can be set or unset in order to signal whether a particular condition is true.:The quality of being obtainable or accessible and ready for use or service._Generic value domain for a primitive java datatype that is a Boolean value (true or false).
Specimen - 2241613	2859515v1	Is the accession number (including block number) of the block used to determine the FISH HER2 result available	Specimen Fluorescence in situ Hybridization HER2/neu Block Accession Number Present Ind-2	the yes/no indicator whether the control number and unique section identifier are present for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination and used for fluorescence in situ hybridization (a physical mapping approach that uses fluorescent tags to detect hybridization of probes within metaphase chromosomes or less condensed somatic interphase chromatin) and HER2 (the ERBB2 Gene at 17q21.1 encodes ERRB2 Receptor Protein Tyrosine Kinase, a 185 kD type I membrane glycoprotein that controls cell growth with features similar to EGFR. Ligand binding increases phosphorylation of tyrosine residues) testing.	No \| Yes
Specimen - 2241613	2001485v5	Specify reason	Specimen Form Not Submitted Reason	the free-text field to specify the reason a bit of tissue or blood or urine that is taken or used for research purposes was not submitted with a printed or electronic document with spaces to be filled out.
Specimen - 2241613	2001484v4	Does specimen accompany this form?	Specimen Form Submitted Ind-2	the yes/no indicator whether a bit of tissue or blood or urine that is taken or used for research purposes being submitted with a printed or electronic document with spaces to be filled out.	No \| Yes
Specimen - 2241613	3110935v1	Test	Specimen GI or Urology Test Type	Text classification for a type of gastrointestinal (GI) or urologic laboratory procedure performed on a biospecimen.	Tissue Pharmacogenetics \| Blood Pharmacogenetics \| Blood Panitumumab antibody \| Blood AMG 479 antibody \| Blood biomarker \| Urine biomarker \| Pharmacodynamics (Acetylation) \| Insoluble Biomarker \| Soluble Biomarker
Specimen - 2241613	2399445v1	Sample type	Specimen Genome Analysis Type	the type of specimen to be used in a genomic analysis.	Whole blood \| Buccal cells
Specimen - 2241613	2469365v1	Date Surgical Gleason Score Obtained	Specimen Gleason Score Date	the date on which a sample of prostate gland tissue was collected to identify any cells very different from normal cells (pattern 4 or 5) according to the standard Gleason grading system.
Specimen - 2241613	2469423v1	Any tertiary elements of Gleason 4 or 5 pattern?	Specimen Gleason Score Indicator	a yes/no indicator to ask if cells very different from normal cells (pattern 4 or 5) were identified in a sample of prostate gland tissue examined using the standard Gleason grading system.	No \| Unknown \| Yes \| Not available
Specimen - 2241613	2474079v1	Percent (%)	Specimen Gleason Score Percentage Value	a value by percentage estimating the portion of cells in a sample which are different from normal cells as identified in prostate gland tissue examined using the standard Gleason grading system.
Specimen - 2241613	65040v3	Millimeters of Gleason Pattern 4-5	Specimen Gleason Score Positive Measurement	for prostate cancer, a measurement in millimeters of the amount of biopsy tissue containing cancer cells with Gleason Pattern 4 to 5.
Specimen - 2241613	2897705v1	% Granulocytes	Specimen Granulocyte Infiltration Percentage Value	Numeric value to represent the percentage of infiltration by granulocytes in a tumor sample or specimen.
Specimen - 2241613	65062v3	Prostate intraepithelial neoplasia (PIN), High Grade	Specimen High Grade Prostatic Intraepithelial Neoplasia Ind-3	a yes/no indicator to ask if pathologic exam of the prostate gland showed changes in epithelium regarded as precursors of cancer, including moderate dysplasia and proliferation of secretory cells.	No \| Yes \| Unknown
Specimen - 2241613	2547718v1	HGPIN	Specimen High Grade Prostatic Intraepithelial Neoplasia Indicator	A present/absent indicator to ask if pathologic exam of the biopsy showed changes in epithelium regarded as precursors of cancer.	Present \| Absent
Specimen - 2241613	2532010v1	HGPIN %	Specimen High Grade Prostatic Intraepithelial Neoplasia Percentage Number	The percentage with high grade prostatic intraepithelial neoplasia (HGPIN).
Specimen - 2241613	2555520v1		Specimen Identifier java.lang.Integer	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement).
Specimen - 2241613	2423034v1	Specimen ID (Identifier)	Specimen Identifier java.lang.Long	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Value Domain for java language Long datatype.
Specimen - 2241613	2423035v1		Specimen Identifier java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Value Domain for java language String datatype.
Specimen - 2241613	2969453v1	Inflammatory Change	Specimen Inflammation Change Category	Classification of tissue based on the amount of inflammatory changes present in a specimen.	Moderate \| Absent \| Mild \| Severe
Specimen - 2241613	2897695v1	% Inflammation	Specimen Inflammation Change Percentage Value	Numeric value to represent local response to cellular injury, marked by capillary dilatation, edema and leukocyte infiltration; clinically, inflammation is manifest by reddness, heat, pain, swelling and loss of function, with the need to heal damaged tissue.
Specimen - 2241613	64315v3	Inflammatory Change	Specimen Inflammation Change Type	a qualitative estimate by percent indicating changes in a tissue specimen due to inflammation.	10-75% inflammatory cells \| <10% inflammatory cells \| >75% inflammatory cells
Specimen - 2241613	2555524v1		Specimen Investigator Comment java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An individual who conducts scientific research. In a clinical setting this individual actually conducts or/and supervises the clinical investigation and study-related procedures; monitors the safety of the trial subjects and investigational staff (i.e., under whose immediate direction an agent is administered or dispensed to a subject), collects and analyses data and study documents, and provides reports in compliance with applicable requirements.:A written explanation or criticism or illustration that is added to a book or other textual material._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2711767v1		Specimen Investigator java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An individual who conducts scientific research. In a clinical setting this individual actually conducts or/and supervises the clinical investigation and study-related procedures; monitors the safety of the trial subjects and investigational staff (i.e., under whose immediate direction an agent is administered or dispensed to a subject), collects and analyses data and study documents, and provides reports in compliance with applicable requirements._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2008251v1	Date Sent	Specimen Lab Submission Date	Date the specimen is submitted to the lab.
Specimen - 2241613	834v3	Date specimen submitted	Specimen Lab Submitted Date	the date the specimen is submitted to the lab.
Specimen - 2241613	2483596v1	Specimen Label	Specimen Label Text	A free text field to capture the specimen label information.
Specimen - 2241613	2423042v1		Specimen Label java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A brief description given for purposes of identification; an identifying or descriptive marker that is attached to an object._Value Domain for java language String datatype.
Specimen - 2241613	3192531v1	Time Specimen Received by Laboratory	Specimen Laboratory Arrival Time	Clock time for the arrival of a biospecimen in a laboratory for processing/testing.
Specimen - 2241613	2555523v1		Specimen Laboratory Comment java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A workplace for the conduct of scientific research.:A written explanation or criticism or illustration that is added to a book or other textual material._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	62647v3	Date of Collection of Sample for Analysis	Specimen Laboratory Procedure Collection Date	the date a biological sample (i.e., blood, urine, marrow, tumor, CSF) was collected from the patient for laboratory analysis.
Specimen - 2241613	2664762v1	Sample test date	Specimen Laboratory Procedure Date	the date of the medical procedure that involves testing a sample of blood, urine, or other substance from the body.
Specimen - 2241613	2405396v1	Time specimen shipped	Specimen Laboratory Procedure Submission Time	the time the specimen is submitted to the lab.
Specimen - 2241613	64195v3	Date of Receipt of Specimens	Specimen Laboratory Received Date	the date specimens were received by a laboratory or banking institution.
Specimen - 2241613	2003949v3	Shipped to	Specimen Laboratory Received Location Name	the name of the lab that was sent/received the specimen.	ECOG Pathology Coordinating Office \| Atkins Lab \| Wood Lab \| Mayo Central Laboratory for Clinical Trials \| Immunologic Monitoring and Cellular Products Lab \| Fox Chase Cancer Center \| H. Lee Moffitt Cancer Center \| Leukemia Immunophenotyping Reference Library \| ECOG Cytogenetics Laboratory \| Other Central Laboratory \| George Sledge \| Myeloma Tumor Biology Laboratory \| ECOG Leukemia Translational Studies Laboratory
Specimen - 2241613	3376368v1	Ship to	Specimen Laboratory Received Location Text	information related to the lab that received the bit of tissue or blood or urine._The textual identifier of an organization that is conducting a trial, a central laboratory delivering the data or a laboratory performing a lab test.
Specimen - 2241613	2008255v1	Name of lab specimen sent to	Specimen Laboratory Received Name	the name of the laboratory or banking institution that received the patient's specimen.
Specimen - 2241613	2898846v1		Specimen Life Sciences Identifier Entity Identifier java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:An independently existing thing (living or nonliving).:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2898845v1		Specimen Life Sciences Identifier Namespace java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:In general, a namespace is an abstract container, which is or could be filled by names, or technical terms, or words, and these represent or stand for real-world things. A description logic terminology namespace is a collection of Kind, Role, Property and Concept definitions. As in computer programming, context namespaces are intended to allow multiple knowledge bases to reside in the same physical database. (from Apelon)_Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2898844v1		Specimen Life Sciences Identifier Organizational Unit java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:Organizational unit like a laboratory, institute or consortium._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2553321v1		Specimen Lineage Text Type	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Descent in a line from a common progenitor or source._Text; the words of something written._Type; a subdivision of a particular kind of thing.	Derived \| Aliquot \| New
Specimen - 2241613	2897710v1	% Lymphocytes	Specimen Lymphocyte Infiltration Percentage Value	Numeric value to represent the percentage of infiltration by lymphocytes in a solid tissue normal sample or specimen.
Specimen - 2241613	2897716v1	% Macrophages	Specimen Macrophage Infiltration Percentage Value	Numeric value to represent the percentage of infiltration by monocytes in a solid tissue normal sample or specimen.
Specimen - 2241613	2883940v1	Block/Slides Type	Specimen Malignant Neoplasm Submission Gastrointestinal Type	the type of gastrointestinal tumor specimen submitted.	20-30 unstained slides \| 2mm core biopsy \| One representative block
Specimen - 2241613	2764923v1	Was research tumor submitted	Specimen Malignant Neoplasm Submission Ind-2	the yes/no indicator whether the malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues, was submitted for research purposes.	No \| Yes
Specimen - 2241613	2529079v1		Specimen Material Type java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The tangible substance that goes into the makeup of a physical object.:Something distinguishable as an identifiable class based on common qualities._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2008274v2	Medial-lateral specimen dimension (cm)	Specimen Measurement X Medial Lateral Centimeter Measurement	Numeric value to represent the medial-lateral size of a specimen.
Specimen - 2241613	2773217v1		Specimen Modified By java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Indicates the person or authoritative body who changed an item._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2475627v1		Specimen NCI Metathesaurus Code Set java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A concept unique identifier within the NCI Enterprise Vocabulary Service's NCI Metathesaurus.:A group of things of the same kind that belong together and are so used._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2519439v1	Specimen name	Specimen Name java.lang.String	The name or label that is assigned to the specimen to identify it; for example, Part A or Block 31c.
Specimen - 2241613	2679827v1	NSABP Specimen ID for Central Testing	Specimen National Surgical Adjuvant Breast and Bowel Project Central Laboratory Identifier Number	the unique identifier for a specimen, a bit of tissue or blood or urine that is taken or used for research purposes, assigned by the National Surgical Adjuvant Breast and Bowel Project (NSABP), a clinical trials cooperative group supported by the NCI, central laboratory, a laboratory delivering the data for a particular study.
Specimen - 2241613	2897730v1	% Neutrophils	Specimen Neutrophil Infiltration Percentage Value	Numeric value to represent the percentage of infiltration by neutrophils in a solid tissue normal sample or specimen.
Specimen - 2241613	2739418v1	If not collected, specify reason	Specimen Not Collected Reason	the reason a tissue specimen taken for research or analysis was not collected.	Institutional error \| Patient refusal \| Administrative error \| Selection error \| Other
Specimen - 2241613	2547633v1	Reason Specimens Not Collected	Specimen Not Collected Reason Text	A free text field used to describe the reason a specimen was not collected.
Specimen - 2241613	2739424v1	Other, specify	Specimen Not Collected Specify	the free-text field to specify the reason a tissue specimen taken for research or analysis was not collected.
Specimen - 2241613	2416947v1	No specimen received	Specimen Not Received Text	the check box to indicator if a specimen was not received.
Specimen - 2241613	3022256v1	Was sample obtained	Specimen Obtain Ind-2	the yes/no indicator related to a part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis being obtained.	No \| Yes
Specimen - 2241613	2241638v1	Specimen obtained at	Specimen Obtained Period Type	the period that a specimen was obtained or collected.	Definitive surgery \| Baseline \| Other \| Interim/Surgery
Specimen - 2241613	2830295v1		Specimen Original Quantity java.lang.Double	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Preceding all others in time or being as first made or performed.:How much there is of something that you can measure; the total amount or number._Generic value domain for a primitive java datatype that is a Double-precision floating point number (64-bit IEEE 7540).
Specimen - 2241613	2856606v1	Specify number	Specimen Other Submission Count	the quantity as related to other specimen being submitted.
Specimen - 2241613	2856608v1	Other, specify	Specimen Other Submission Specify	the free-text field to specify the type of other specimen being submitted.
Specimen - 2241613	2475624v1		Specimen Parent Identifier java.lang.Long	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A mother or a father; an immediate progenitor.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement).
Specimen - 2241613	2771361v1		Specimen Part Life Sciences Identifier Entity Identifier java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:An independently existing thing (living or nonliving).:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2771360v1		Specimen Part Life Sciences Identifier Namespace java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:In general, a namespace is an abstract container, which is or could be filled by names, or technical terms, or words, and these represent or stand for real-world things. A description logic terminology namespace is a collection of Kind, Role, Property and Concept definitions. As in computer programming, context namespaces are intended to allow multiple knowledge bases to reside in the same physical database. (from Apelon)_Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2771359v1		Specimen Part Life Sciences Identifier Organizational Unit java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:Organizational unit like a laboratory, institute or consortium._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2475626v1		Specimen Part Sequence Number java.lang.Integer	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A serial arrangement in which things follow in logical order or a recurrent pattern.:A numeral or string of numerals expressing value, quantity, or identification._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement).
Specimen - 2241613	2553322v1		Specimen Pathology Finding Status Specimen Histopathological Text Type	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The medical science, and specialty practice, concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes. Informally used to mean the result of such an examination.:The result of an examination or inquiry.:A condition or state at a particular time._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A branch of pathology concerned with the tissue changes characteristic of disease._Text; the words of something written._Type; a subdivision of a particular kind of thing.	Not Specified \| Non-Malignant \| Malignant, Invasive \| Malignant, Pre-Invasive \| Non-Malignant, Diseased \| Pre-Malignant \| Malignant \| Metastatic
Specimen - 2241613	2475625v1		Specimen Pathology Report Identifier java.lang.Long	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A report that provides a description of the gross and microscopic examination of the specimen and is used to make a diagnosis and to determine treatment. It defines which structures and organs of the body are involved by the tumor, verifies the primary site of the cancer and describes the extent to which it has spread.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement).
Specimen - 2241613	2897683v1	% Tumor Edge	Specimen Perimeter Tumor Percentage Value	Numeric value to represent the percentage of the perimeter of a specimen/sample that is tumor.
Specimen - 2241613	2711766v1		Specimen Pharmacologic Substance Name java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An active natural, synthetic or semi-synthetic ingredient including endogenous body substance that is intended to furnish pharmacological activity or other direct effect in the diagnosis, cure, mitigation, treatment, or prevention of disease or to affect the structure or any function of the human body, but does not include intermediates used in the synthesis of such ingredient (21 CFR 314.3(b)).:The words or language units by which a thing is known._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2915879v1	Date PK Performed	Specimen Plasma Pharmacokinetic Study Collected Date	the date a pharmacokinetic analysis was performed.
Specimen - 2241613	2389515v1	Pharmacokinetics plasma sample	Specimen Plasma Pharmacokinetic Study Collected Type	the type or amount of plasma, the noncellular portion of the circulating blood, collected for examination or diagnosis using the process by which a drug is absorbed, distributed, metabolized, and eliminated.	10 cc sample for estradiol \| 15 cc sample
Specimen - 2241613	64768v3	Specimen State at Time of Measurement	Specimen Preparation Method Text	a text field to describe the process to make a sample of tissue or blood ready for (transport or) use for research (esp. relevant for tissue changes due to freezing and fixatives).
Specimen - 2241613	2842569v1	Representative primary tumor from lymph node	Specimen Primary Malignant Neoplasm Lymph Node Submission Type	the type of submission of a tissue specimen taken from the lymph node, a rounded mass of lymphatic tissue that is surrounded by a capsule of connective tissue, containing a sample of the primary malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues.	Paraffin block \| Unstained slide
Specimen - 2241613	2842562v1	Representative primary tumor from prostate	Specimen Primary Malignant Neoplasm Prostate Gland Submission Type	the type of submission of a tissue specimen taken from the prostate, walnut shaped accessory sex gland of the male reproductive system that secretes a fluid which is part of the semen, containing a sample of the primary malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues.	Paraffin block \| Unstained slide
Specimen - 2241613	2842566v1	Representative primary tumor from seminal vesicle	Specimen Primary Malignant Neoplasm Seminal Vesicle Submission Type	the type of submission of a tissue specimen taken from the seminal vesicle, one of the two paired glands in the male genitourinary system, posterior to the bladder and superior to the prostate gland, that produces fructose-rich seminal fluid which is a component of semen, containing a sample of the primary malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues.	Paraffin block \| Unstained slide
Specimen - 2241613	2773218v1		Specimen Received Date and Time java.util.Date	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._To have taken, accepted, or gotten something offered.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision.
Specimen - 2241613	2501670v1	Date Specimen Received From Pathology	Specimen Received From Pathology Date	The date on which a bit of tissue or blood or urine that is taken or used for research purposes and acquired from pathology which concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes.
Specimen - 2241613	2519440v1		Specimen Registration Date and Time java.util.Date	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of enrolling; an entry in a register.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision.
Specimen - 2241613	2670924v1	Did patient consent to DNA specimen use in future research studies?	Specimen Related Genetic Future Research Consent Ind-2	the yes/no indicator that asks whether the patient"s initial consent was given for use of a specimen use for future genetic research.	No \| Yes
Specimen - 2241613	2647130v1	Date of consent [for] pharmacogenetic research	Specimen Related Genetic Research Consent Date	the date relating to consent and related genetic research using a specimen.
Specimen - 2241613	2556199v1	Patient's initial consent given for specimen use for genetic research relating to the study treatment	Specimen Related Genetic Research Consent Ind-2	the yes/no indicator relating to consent and the related genetic research using a specimen.	No \| Yes
Specimen - 2241613	2003973v3	Is extra material stored?	Specimen Remaining Storage Ind-3	the yes/no/unknown indicator whether there was storage of the remaining preparation of tissue or bodily fluid taken for examination or diagnosis.	No \| Yes \| Unknown
Specimen - 2241613	2003974v3	Extra material type	Specimen Remaining Storage Name	the name of the additional or extra material (specimen) collected or stored.
Specimen - 2241613	2519441v1		Specimen Removed Date and Time java.util.Date	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Taken out of, separated from, or eliminated.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision.
Specimen - 2241613	2501665v1	Date Specimen Requested From Pathology	Specimen Requested From Pathology Date	The date on which a bit of tissue or blood or urine that is taken or used for research purposes and requested from pathology which concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes.
Specimen - 2241613	3562987v1	Mandatory or optional	Specimen Requirement Collection Status	the status related to whether a specimen collection is considered mandatory or optional per protocol.	Optional \| Mandatory
Specimen - 2241613	65086v3	Grams Resected	Specimen Resection Weight Measurement	a numeric measure in grams for the weight of a sample of tissue or body fluid collected during an operative procedure.
Specimen - 2241613	2513678v1		Specimen Second Dimension Position java.lang.Integer	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Coming next after the first in position in space or time or degree or magnitude.:The magnitude of something in a particular direction, especially length or width or height.:The particular portion of space occupied by a physical object._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement).
Specimen - 2241613	2503758v1	Date Specimen Shipped To CCMO	Specimen Shipped To Constortia Contract Management Office Date	The date on which the specimen was shipped to the consortia contract management office (CCMO).
Specimen - 2241613	2006898v1.1	Courier Tracking Number	Specimen Shipping Company Identifier Number	the identifier number for the specimen used by the courier.
Specimen - 2241613	2190839v1	Quantity of items shipped	Specimen Shipping Number	the number of specimens shipped.
Specimen - 2241613	3334700v1	Quantity Items Received	Specimen Shipping Receive Number	A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._The act or business of transporting goods._To take, accept, or got something offered._Number
Specimen - 2241613	2190555v1	Other, specify	Specimen Shipping Specify	the specified specimen shipping type.
Specimen - 2241613	2190553v1.1	Items shipped	Specimen Shipping Specimen Shipping Type	information related to The act or business of transporting a tissue specimen._the type of shipment method for a specimen.	Scrolls \| Cores \| OCT \| Slides \| Snap Frozen \| Block \| Other
Specimen - 2241613	2548346v1	Total number of specimen slices	Specimen Slice Count	Value to identify the number of 1 cm slices made from a specimen.
Specimen - 2241613	2548354v1	Specimen slice	Specimen Slice Dimensionality Name	Text term to represent the dimensionality by which a specimen slice can be identified.	Medial most specimen slice \| Lateral most specimen slice \| Inferior most specimen slice \| Superior most specimen slice \| Anterior most specimen slice \| Posterior most specimen slice
Specimen - 2241613	2548350v1	How was specimen sliced?	Specimen Slice Dimensionality Type	Types of specimens based on slice dimensionality.	med/lat \| sup/inf \| ant/post
Specimen - 2241613	2548356v1	Slice #	Specimen Slice Identifier	Unique identifier for a specimen slice referenced by the dimensional cutting pattern.
Specimen - 2241613	2711769v1		Specimen Specimen Date java.util.Date	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.:The particular day, month and year an event has happened or will happen._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision.
Specimen - 2241613	2608232v1		Specimen Specimen Identifier java.lang.Long	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement).
Specimen - 2241613	2529080v1		Specimen Specimen Identifier java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2608233v1		Specimen Specimen Type Code java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.:Something distinguishable as an identifiable class based on common qualities.:A system, often of numbered categories, for representation of data._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2178270v1	Preservative used	Specimen Sputum Preservative Code	Type of preservative used for sputum specimens.	9 \| 7 \| 1 \| 2 \| 3
Specimen - 2241613	2178198v1	Preservative used, specify	Specimen Sputum Preservative Other Text	Type of preservative used for sputum specimens that does not appear in the pick-list.
Specimen - 2241613	2773219v1		Specimen Status java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A condition or state at a particular time._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	3664659v1	Specimen Type	Specimen Sun Exposure Type	The value that describes the skin specimen type.	Non-sun-exposed skin \| Sun-protected skin \| Sun-exposed skin
Specimen - 2241613	2008275v2	Superio-inferior specimen dimension (cm)	Specimen Superior Inferior Centimeter Measurement	Numeric value to represent the superior-inferior measurement of a specimen, a bit of tissue or blood or urine that is taken or used for research purposes.
Specimen - 2241613	2188954v1	Method of extraction	Specimen Surgical Procedure Technique	information about the method of extraction of a tissue specimen.	Mastectomy \| Axillary dissection \| Re-excision \| General surgery, NOS \| Sentinel node dissection \| Lumpectomy \| Biopsy
Specimen - 2241613	2178259v1	Tissue laterality:	Specimen Tissue Laterality Code	Side of the body tissue specimen was taken from.	9 \| 1 \| 2 \| 8
Specimen - 2241613	2842654v1	Are TMA samples being submitted at prostatectomy	Specimen Tissue Microarray Prostatectomy Submission Ind-2	the yes/no indicator whether there was submission of tissue microarrays, a device for use in high-throughput molecular analysis/screening of clinical tissue specimens that spatially arrange 500-1000 tumor biopsies or other tissue onto a microarray block, which is then sliced into sections for probing DNA, RNA or protein targets to provide coincident analysis of all specimens in the array, following prostatectomy, an operation to remove part or all of the prostate.	No \| Yes
Specimen - 2241613	2842658v1	Sample type	Specimen Tissue Microarray Prostatectomy Submission Type	the type of specimen submitted for use on tissue microarrays, a device for use in high-throughput molecular analysis/screening of clinical tissue specimens that spatially arrange 500-1000 tumor biopsies or other tissue onto a microarray block, which is then sliced into sections for probing DNA, RNA or protein targets to provide coincident analysis of all specimens in the array, following prostatectomy, an operation to remove part or all of the prostate.	Cores \| Parraffin block
Specimen - 2241613	3005019v1	Total Volume	Specimen Total Volume Amount Milliliter Number	Numeric value for the total amount of sample or specimen, measured in milliliters (mL).
Specimen - 2241613	2519443v1		Specimen Tracer java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A substance that is identifiable by virtue of its radioactive signature, color, or other distinguishing physical property, such as a dye, radioactive isotope, or inert chemical, that is introduced into a biological or mechanical system and can be followed_Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	3623470v1	Date Specimen Transferred	Specimen Transfer Date	The date the specimen was moved from one location to another.
Specimen - 2241613	3649977v1	Was the specimen transferred?	Specimen Transfer Yes No Indicator	The response to a question that asks if a specimen was transferred.	No \| Yes
Specimen - 2241613	2248183v1	Shipment type	Specimen Transport Description Type	the type of shipment method used in the transport of specimens.	Dry ice \| Wetpack \| Cold pack
Specimen - 2241613	2648061v1	Was a research Snap Frozen specimen obtained	Specimen Transport Frozen Laboratory Ind-2	a yes/no question relating to frozen specimen transport to a lab.	No \| Yes
Specimen - 2241613	2405485v1	Specify reason	Specimen Transport Frozen Laboratory Reason	the reason a sample was shipped using dry ice.	Sample shipped with other samples \| Sample shipped after being stored \| Buccal sample \| Other
Specimen - 2241613	2405488v1	Other, specify	Specimen Transport Frozen Laboratory Specify	the free text field to specify the other reason a sample was shipped using dry ice.
Specimen - 2241613	2897693v1	% Central Core	Specimen Tumor Core Percentage Value	Numeric value to represent the percentage of epicenter of the tumor in a specimen.
Specimen - 2241613	2791170v1	Specimen Type	Specimen Type	The type of specimen taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.	Normal mucosa \| ACF \| Colon Tissue \| Whole Blood
Specimen - 2241613	3111302v1	Sample Type	Specimen Type Collection Biospecimen Type	Text term to describe the source of a biospecimen used for a laboratory test.	Feces \| Skin \| Ascites \| Other \| Bone Marrow \| CSF \| Serum \| Tumor \| Buccal Mucosa \| Urine \| Pleural Fluid \| Normal Tissue \| Cell \| Blood \| Saliva \| Plasma \| PBMCs \| None \| Unspecified \| Tissue
Specimen - 2241613	2513675v1		Specimen Type Collection Text Type	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A subdivision of a particular kind of thing._Text; the words of something written._Type; a subdivision of a particular kind of thing.	DNA \| RNA \| RNA, poly-A enriched \| cDNA \| Protein \| Not Specified \| Whole Blood \| Whole Bone Marrow \| Bone Marrow Plasma \| Cerebrospinal Fluid \| Lavage \| Pericardial Fluid \| Synovial Fluid \| Amniotic Fluid \| Sweat \| Milk \| Gastric Fluid \| Bile \| Feces \| Fresh Tissue \| Frozen Tissue Slide \| Fixed Tissue \| Fixed Tissue Slide \| Cryopreserved Cells \| Body Cavity Fluid \| Vitreous Fluid \| RNA, cytoplasmic \| RNA, nuclear \| Fixed Tissue Block \| Frozen Tissue \| Frozen Tissue Block \| Fixed Cell Block \| Frozen Cell Block \| Frozen Cell Pellet \| Microsessected \| Serum \| Sputum \| Urine \| Plasma \| Slide \| Saliva
Specimen - 2241613	2715527v1		Specimen Unique Identifier HL7.InstanceIdentifier	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A set of characters used as a code that is unique in the context or the system for which it is created. It serves as a means of identification and reference (often instead of a name) for an entity, person, thing, function, procedure, activity, variable, or a body of data._Generic value domain for HL7 instance identifiers that uniquely identify a thing or object.
Specimen - 2241613	2731351v1		Specimen Unique Identifier java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A set of characters used as a code that is unique in the context or the system for which it is created. It serves as a means of identification and reference (often instead of a name) for an entity, person, thing, function, procedure, activity, variable, or a body of data._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2608235v1		Specimen Unit of Volume java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An indication of the type of unit of measure being used to express a volume._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2475623v1		Specimen Universally Unique Identifier java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A 128 bit identifier. Depending on the mechanism used to generate it, it is either guaranteed to be different from all other UUIDs/GUIDs generated until 3400 AD or extremely likely to be different. Its relatively small size lends itself well to sorting, ordering, and hashing of all sorts, storing in databases, simple allocation, and ease of programming in general._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	3101110v1		Specimen Use java.lang.String	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Use; put into service; make work or employ (something) for a particular purpose or for its inherent or natural purpose._Generic value domain for a java datatype that is a class that represents character strings.
Specimen - 2241613	2475622v1		Specimen Version java.lang.Long	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A form or variant of a type or original._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement).
Specimen - 2241613	2222486v1	Approximate volume of sample	Specimen Vial Tissue Collection Received Average Volume Measurement	the volume, in milliliters, a vial or collection tube containing a bit of tissue or blood or urine being received and placed into a repository or tissue bank.
Specimen - 2241613	2006071v3	Average Volume Per Tube	Specimen Vial Tissue Collection Submission Average Volume Measurement	the average volume, in milliliters, of a vial or collection tube containing a bit of tissue or blood or urine being submitted to a repository or tissue bank.
Specimen - 2241613	2006070v3	Number of Tubes Banked	Specimen Vial Tissue Collection Submission Count	the numeric count of vials or collection tubes containing a bit of tissue or blood or urine being submitted or placed into a repository or tissue bank.
Specimen - 2241613	2423043v1		Specimen Visible Flag java.lang.Boolean	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Perceptible especially by the eye; open to easy view.:An indicator that can be set or unset in order to signal whether a particular condition is true._Value Domain for java language Boolean datatype
Specimen - 2241613	2608234v1		Specimen Volume java.lang.Long	Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The amount of three dimensional space occupied by an object or the capacity of a space or container._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement).

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Specimen Classes and Attributes

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CDEs associated with "Specimen" Classes

Specimen Classes and Attributes