Specimen Classes and Attributes
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Listed in CDEs Sequenced by UML Class
Tumor-specific entries are annotated with their associated tumor types.
Class | CDE Public Id | CRF Question Text | Data Element | Definition | Valid Values (hover for Value Meaning) |
---|---|---|---|---|---|
Specimen - 2177026 | 2008429v1 | # of Aliquots | Aliquot Number | Number of aliquots associated with a sample/specimen. | |
Specimen - 2177026 | 3009159v1 | Procedure | Biospecimen Collection Procedure Name | Name of of the test or procedure used for biospecimen acquisition, | Core Needle Biopsy | FNA | Other | Cytology | VATS Surgical Specimen | Mediastinoscopy | Surgical Biopsy | Bronchoscopy Biopsy |
Specimen - 2177026 | 3103514v1 | Method of Tissue Procurement | Biospecimen Procurement Method Type | Text term that describes the method of which tumor/cancer tissue is removed from a patient. | Excisional Biopsy | Surgical Resection | Aspirate | Incisional Biopsy | Other | Endoscopic Biopsy | Other Method, specify | Laparoscopic Partial Nephrectomy | Open Partial Nephrectomy | Hand Assisted Laparoscopic Radical Nephrectomy | Laparoscopic Radical Nephrectomy | Open Radical Nephrectomy | Endo Rectal Tumor Resection | Pan-Procto Colectomy | Abdomino-perineal Resection of Rectum | Anterior Resection of Rectum | Total Colectomy | Sigmoid Colectomy | Transverse Colectomy | Right Hemicolectomy | Left Hemicolectomy | Tumor Resection | Open Craniotomy | Fine Needle Aspiration | Needle Biopsy | Indeterminant | Endoscopic Mucosal Resection (EMR) |
Specimen - 2177026 | 3234083v1 | Research Sample | Collection Research Biospecimen Name | Text identification of a biospecimen collected for an individual participating in a research setting. | |
Specimen - 2177026 | 2195135v1 | Time of Freezing | Freezing Time | The freezing time of the participant's specimen or tissue. | |
Specimen - 2177026 | 2220525v1 | Date Last Urine Void | Last Urine Void Date | The date of the last urine void sample. | |
Specimen - 2177026 | 2220529v1 | Time Last Urine Void | Last Urine Void Time | The time of the last urine void sample. | |
Specimen - 2177026 | 3119691v1 | What is the nature of the submitted specimen? | Pathologic Specimen Submitted Source | Source or pathologic origin of specimen tissue submitted. | Normal Tissue | Regional Cutaneous or Subcutaneous Metastasis | Regional Lymph Node Metastasis | Distant Metastases, specify site | Primary Tumor |
Specimen - 2177026 | 3371409v1 | (If yes) Were the therapeutic changes noted in: | Preoperative Therapeutic Effect Anatomic Site | Anatomic site showing therapeutic effects of preoperative therapy through tissue sampling. | Breast and nodes | Nodes only | Breast only |
Specimen - 2177026 | 2414969v1 | Research collection tubes/amounts | Research Specimen Collected Tube Type | Types of specimen tube(s) with specimen amounts collected for research purposes. | 8 cc blood 2nd tube | 8 to 10 cc ACD | 10 cc EDTA | 10 cc Wildcard tube | 100 cc urine | 8 cc blood |
Specimen - 2177026 | 2187711v1 | Result of Draw | Sample Collection Result | Final outcome of the activity of collecting a sample, in terms of success or not obtained. | Sample Obtained Successfully | Sample Not Obtainable |
Specimen - 2177026 | 2321283v1 | Sample Weight (gm) | Sample Weight In Gram Number | Numeric value to represent the weight of a specimen or tissue sample in number of grams. | |
Specimen - 2177026 | 64674v4 | Accession Number | Specimen Accession Number | the number assigned to the surgical pathology specimen to uniquely identify it. | |
Specimen - 2177026 | 2230047v4 | Specimen Accession # | Specimen Accession Number | The alphanumeric identifier assigned to the specimen to uniquely identify it. | |
Specimen - 2177026 | 2189033v1 | Number of aliquots | Specimen Aliquot Number | information about the number of aliquots. | |
Specimen - 2177026 | 2189021v1 | Average aliquot volume | Specimen Aliquot Volume Average Value | information about the average aliquot volume. | |
Specimen - 2177026 | 3544444v1 | Was specimen collected-Antiglycan antibodies | Specimen Alpha-Gal Glycosphingolipid Antibodies Collected Yes No Indicator | the yes/no indicator that asks whether a specimen was collected relating to antiglycan antibodies. | No | Yes |
Specimen - 2177026 | 3579604v1 | Were specimens collected for anti-glycan antibodies correlative biology study | Specimen Alpha-Gal Glycosphingolipids Antibody Correlative Study Collected Yes No Unknown Not Applicable Indicator | the yes/no/unknown/not applicable indicator that asks whether a specimen was collected for a correlative study relating to antiglycan antibodies. | No | Yes | Unknown | Not Applicable |
Specimen - 2177026 | 2183030v1 | Specimen Amount | Specimen Amount | The number that describes the amount of specimen included in the sample. | |
Specimen - 2177026 | 3369255v1 | Was the anal specimen collected | Specimen Anus Collected Ind-2 | the yes/no question related to the sample collected from the patient for analysis or examination from the lower opening of the digestive tract, lying in the cleft between the buttocks, through which fecal matter is extruded. | No | Yes |
Specimen - 2177026 | 3369271v1 | Specify reason | Specimen Anus Negation Collected Specify | the free-text field related to not having the sample collected from the patient for analysis or examination from the lower opening of the digestive tract, lying in the cleft between the buttocks, through which fecal matter is extruded. | |
Specimen - 2177026 | 3226338v1 | Specify | Specimen Biological Storage Other Specify Text | The free text field that describes under which condition the specimen was stored. | |
Specimen - 2177026 | 2190866v1.1 | Storage type | Specimen Biological Storage Specimen Biological Storage Type | information related to biological storage of a specimen._the type of storage for a biologic specimen. | Refrigerator (4 degrees C) | Standard non-cycling freezer (-20 degrees C) | Ultra-cold Freezer (-80 degrees C) | Liquid Nitrogen (<-150 degrees C) | Other | Room temperature |
Specimen - 2177026 | 3226336v1 | If the specimen WAS NOT shipped on the day of collection, under which conditions was the specimen stored? | Specimen Biological Storage Type | The name that describes the type of condition under which a specimen was stored. | Not Applicable | Not stored per protocol, specify | Stored per protocol |
Specimen - 2177026 | 2587076v1 | Site of biopsy | Specimen Biopsy Anatomic Site | the anatomic location of a biopsy of a pathologic specimen or tissue. | Bone Marrow | Primary Neoplasm | Other | Lung | Liver | Skin | GI |
Specimen - 2177026 | 2201978v1 | Biopsy Size | Specimen Biopsy Size Number | The size in millimeters of the biopsy specimen. | |
Specimen - 2177026 | 3235995v1 | Specify biopsy site: | Specimen Biopsy Specify Text | information regarding a biopsy of a pathologic specimen or tissue._Be specific about something; define clearly._Text; the words of something written. | |
Specimen - 2177026 | 2482150v1 | Was a biopsy specimen submitted? | Specimen Biopsy Submitted Indicator | The yes/no indicator that asks whether a biopsy specimen was submitted. | YES | NO |
Specimen - 2177026 | 2453354v2 | Stored at temperature specified in SOP? | Specimen Biostorage Condition Category | Text term to represent the temperature conditions under which a biological specimen is stored. | -100 to -130 Degrees Celsius | Vapor Phase Liquid Nitrogen | 4 Degrees Celsius | -20 Degrees Celsius | -80 Degrees Celsius | Room Temperature |
Specimen - 2177026 | 2624022v1 | Block # | Specimen Block Identifier | Unique identifier used to refer to a specific specimen block. | |
Specimen - 2177026 | 64679v4 | Blocks | Specimen Block Number | the block number of a specimen. | |
Specimen - 2177026 | 2006887v1 | total number of cells counted | Specimen Cell Count Total Value | the total number of cells counted. | |
Specimen - 2177026 | 2190548v1 | Percent area tumor cells | Specimen Cell Percentage Value | Total area of a section represented by tumor cells, expressed as a percentage value. | |
Specimen - 2177026 | 64336v3 | Other specify | Specimen Cell Source Specify | the free text field to describe the source of cells used for analysis for pathology. | |
Specimen - 2177026 | 3233185v1 | Does the specimen consist of whole nuclei or sections of nuclei, eg. Sections of formalin-fixed, paraffin-embedded tissue? | Specimen Characteristics Nucleus Category | The response to a question that asks if the nuclei specimen is either whole or sections. | Sections of nuclei | Whole nuclei |
Specimen - 2177026 | 64511v3 | % Coefficient of Variation | Specimen Coefficient of Variation Percentage Value | the percentage value for the coefficient of variation. | |
Specimen - 2177026 | 3203075v1 | City of Sample Procurement | Specimen Collected Address City Name | Text to identify the name of a city in which the sample was procured. | |
Specimen - 2177026 | 3203072v1 | State / Province / Country of Sample Procurement | Specimen Collected Address Geographic Area Name | Text to identify the name of the state, province, or country in which the sample was procured. | |
Specimen - 2177026 | 2227029v1 | Amount Obtained | Specimen Collected Amount Number | Number that describes the amount of specimen included in the sample. | |
Specimen - 2177026 | 2261853v1 | Number of samples collected (total) | Specimen Collected Count | Numeric count of the total number of tissue samples/specimens collected. | |
Specimen - 2177026 | 2202102v1 | Date Collected | Specimen Collected Date | The date on which the specimen was collected. | |
Specimen - 2177026 | 64191v4 | Date Obtained Date Obtained | Specimen Collected Date | the date on which a specimen was collected. | |
Specimen - 2177026 | 2716541v1 | Name of Sample | Specimen Collected Gynecologic Name | Names to identify samples collected from a patient on a gynecologic study. [Manually-curated] | Pre Cycle 6 frozen plasma Off treat prior to starting cycle 6 | Pre Cycle 6 frozen plasma Before starting cycle 6 | Pre Cycle 3 frozen plasma Off treat prior to starting cycle 3 | Pre Cycle 3 frozen plasma Before starting cycle 3 | Pre Cycle 1 frozen plasma | Pre Cycle 3 tumor biopsy Off treat prior to starting cycle 3 | Pre Cycle 3 tumor biopsy Before starting cycle 3 | Pre Cycle 1 tumor biopsy |
Specimen - 2177026 | 2423688v1 | give reason | Specimen Collected IBCSG Specify | the free text field to specify the status of a pathology specimen that was collected. | |
Specimen - 2177026 | 2423687v1 | Is protocol-required pathology material available | Specimen Collected IBCSG Status | the status of a pathology specimen that was collected. | Available now | Available within 3 months | Not available |
Specimen - 2177026 | 2185981v1 | Must provide tissue and blood samples | Specimen Collected Ind-2 | the yes/no indicator related to the sample collected from the patient for analysis or examination. | No | Yes |
Specimen - 2177026 | 3163341v1 | Collected? | Specimen Collected Indicator | Text term to signify whether a biospecimen was collected from an individual. | Unknown | Yes | No |
Specimen - 2177026 | 64340v3 | Other specify | Specimen Collected Method Specify | the free text field to describe some other type of procedure or method used to collect the specimen. | |
Specimen - 2177026 | 64338v3 | How was the specimen obtained | Specimen Collected Method Type | the type of procedure or method used to collect the specimen. | Fine needle aspiration | Abdominal/ascites effusion | Biopsy | Bronchial alveolar lavage (BAL) | Bronchial brushing/washing | Mediastinoscopy | Pericardial effusion | Pleural effusion | Pleural lavage | Sputum, induced | Sputum, spontaneous | Other | Thoracotomy | Sternotomy | Bronchoscopy |
Specimen - 2177026 | 2261834v2 | Number of patients from whom samples have been collected | Specimen Collected Patient Count | Numeric count of the number of patients for whom tissue samples are collected. | |
Specimen - 2177026 | 64332v5 | Sample Period | Specimen Collected Period Type | the timeframe of specimen collection relative to treatment and diagnosis. | Complete response | Cycle 1 - Day 8 | Cycle 1 - Day 21 | Cycle 4 - Day 8 | Cycle 4 - Day 21 | Cycle 8 - Day 1 | Cycle 12 - Day 1 | Pre-registration | Post-treatment | Pre-diagnosis | Pre-treatment | Unknown | Baseline | Death | Progression/Relapse | Diagnosis of second malignancy | After study entry | Diagnosis of primary | Second-look surgery | Other |
Specimen - 2177026 | 2548335v1 | Breast Specimen | Specimen Collected Submission Type | Text description of the type of tissue specimen submitted for review. | Single specimen | Main specimen with separately submitted margins |
Specimen - 2177026 | 2188550v1 | Time of sampling | Specimen Collected Text | the sample collected from the patient for analysis or examination. | |
Specimen - 2177026 | 64192v4 | Time Specimen Collected | Specimen Collected Time | the time at which a specimen was collected. | |
Specimen - 2177026 | 2008060v1 | Specimen Collection Method | Specimen Collection Method Type | Type of method used for specimen acquisition, using an enumerated set of surgical and procedural approaches. . | Not Specified | Core Needle Biopsy | Surgical Biopsy | FNA | Axill Node Dissect | Breast Bx | Exc Bx/Lumpectomy | Incisional Bx | Lumpectomy w/LN Dissection | Needle Bx | Partial Mastectomy | Punch Bx Skin | Sentinel Node Bx | Other | MASTECTOMY | Modified Radical Mastectomy |
Specimen - 2177026 | 2004369v4 | Sample No. | Specimen Collection Sampling Number | the specimen collection sample number. | |
Specimen - 2177026 | 2007033v1 | Have or will specimens be shipped within ten days of registration | Specimen Confirmation Submitted Ind-2 | the yes/no indicator whether there was confirmation that a specimen was submitted or shipped. | No | Yes |
Specimen - 2177026 | 2222481v1 | Sample period | Specimen Course Collection Number | the completed course number during which a specimen was collected. | |
Specimen - 2177026 | 3357860v1 | Were all specimens collected at this visit | Specimen Current Patient Visit Collected Ind-2 | the yes/no question related to the sample collected at the present visit from the patient for analysis or examination. | No | Yes |
Specimen - 2177026 | 2673869v1 | Specimen First Weight java.lang.Float | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Preceding all others in time or space or degree.:The vertical force exerted by a mass as a result of gravity._Generic value domain for a primitive java datatype that is Single-precision floating point number (32-bit IEEE 754). | ||
Specimen - 2177026 | 3005037v1 | Date of tissue fixation | Specimen Fixative Date | the date tissues or cells were prepared for microscopic study. | |
Specimen - 2177026 | 3005035v1 | Duration of fixation | Specimen Fixative Duration | the duration of fixation relating to tissues or cells prepared for microscopic study. | |
Specimen - 2177026 | 65080v3 | Other, specify | Specimen Fixative Specify | the free text field to identify other fixatives or chemicals used to preserve a tissue specimen. | |
Specimen - 2177026 | 65078v3 | Fixative | Specimen Fixative Type | the field to identify the type of fixative used to preserve a tissue specimen. | RNAlater | Glutaraldehyde | Saline | OCT media | Formalin | Other | Unknown |
Specimen - 2177026 | 2194303v1 | # Specimens Frozen | Specimen Frozen Number | The number of specimens frozen. | |
Specimen - 2177026 | 3123687v1 | Is there frozen tissue available? | Specimen Frozen Tissue Availability Indicator | Text indicator to signify whether frozen tissue is available. | Unknown | No | Yes |
Specimen - 2177026 | 64342v3 | Specimen ID Number | Specimen Identifier Number | a unique identification number for the laboratory specimen submitted for analysis or bank storage. | |
Specimen - 2177026 | 2181544v1 | Date of Immunofixation | Specimen Immunofixation Lab Date | the date on which a patient laboratory specimen is processed using an immunofixation technique. | |
Specimen - 2177026 | 2626411v1 | Specimen source | Specimen Location Anatomic Site Name | name of the organ site (single) within the body related to the location of a specimen. | Mammary Gland | Ear, Pinna (External) | Adipose | Amniotic Fluid | Testicle | Vena Cava, Inferior/Superior | Neck/Chest | Vein | Adenoid | Leptomeninges | Other | Epidural space | Lymph node(s) Para aortic | Lymph node(s) Scalene | Lymph nodes(s) Mediastinal | Lymph node(s) Regional | Lymph node(s) Distant | Retro-orbital Area | Paraspinal Ganglion | Nerve(s) Cranial | Lymph Node(s) Subclavicular | Rectosigmoid Junction | Splenic Flexure | Transverse Colon | Ascending Colon Hepatic Flexure | Floor of Mouth | Alveolar Ridge | Pineal Gland | Clitoris | Gastroesophageal Junction | Trunk, Superficial | Urethra | Peritoneum | Upper extremity | Placenta | Antrum | Cardia | Capillary | Cartilage | Lacrimal Gland | Ligament | Tendon | Umbilical Cord | Vas Deferens | Colon, mucosa only | Carotid body | Ampulla of Vater | Ganglia | Foreskin | Fluid | Esophagus, Mucosa only | Effusion | Parathyroid | Oral Cavity, Mucosa only | Nails | Mesothelium | Trachea/Major Bronchi | Tonsil, Pharyngeal | Synovium | Small Bowel, Mucosa only | Stomach, Mucosa only | Skeletal Muscle | Peri-orbital Soft Tissue | Nasal Soft Tissue | Mediastinal Soft Tissue | Lymph Node(s) Submandibular | Lymph Node(s) Splenic | Lymph Node(s) Retroperitoneal | Lymph Node(s) Popliteal | Lymph Node(s) Parotid | Lymph Node(s) Occipital | Lymph Node(s) Mesenteric | Lymph Node(s) Iliac-external | Lymph Node(s) Iliac-common | Lymph Node(s) Femoral | Lymph Node(s) Epitrochlear | Skeletal Bone | Extremities | Tibia | Soft Tissue | Not Applicable | Oropharynx | Nasal Cavity | Aortic Body | Spinal Cord | Esophagus | Appendix | Ascending colon | Bone | Bone marrow | Brain | Carina | Cecum | Cerebrospinal fluid | Chest wall | Descending colon | Diaphragm | Fallopian tube | Lymph nodes | Mediastinum | Neck | Pericardium | Pleura | Prostate | Rectum | Trunk | Axilla | Breast | Heart | Kidney | Hip | Wrist | Chest | Abdomen | Vulva | Vertebra | Frontal lobe | Cerebellum | Central nervous system | Spine | Tonsil | Spleen | Buccal mucosa | Hard palate | Parotid gland | Thymus | Ovary | Stomach | Mouth | Thorax | Genitourinary | Ischium | Retroperitoneum | Skull | Mandible | Maxilla | Sternum | Ribs | Scapula | Clavicle | Humerus | Femur | Fibula | Ilium | Lung | Liver | Skin | Lymph node | Anus | Large bowel | Jejunum | Ileum | Pelvis | Vagina | Pancreas | Cervix | Colon | Uterus | Adrenal gland | Anal sphincter | Blood | Aorta | Artery | Back | Buttock | Bronchus | Conjunctiva | Salivary gland | Scalp | Lip | Testicle | Duodenum | Eye | Gallbladder | Intestine | Larynx | Penis | Tongue | Muscle | Retina | Trachea | Peritoneal cavity | Pharynx | Scrotum | Arm | Leg | Ankle | Palate | Acetabulum | Anal canal | Anorectum | Bile duct | Blood vessel | Brain stem | Bronchiole | Brow | Buccal cavity | Carotid artery | Cerebral cortex | Colon and rectum | Connective tissue | Ear | Endocrine gland | Finger | Foot | Forearm | Gastrointestinal tract | Groin | Gum | Hand | Hypopharynx | Lymphoma | Nasopharynx | Oral cavity | Patella | Pituitary gland | Pylorus | Sacrum | Shoulder | Sigmoid colon | Thigh | Uvula | Vertebral column | Ureter | Cerebrum | Throat | Bladder | Omentum | Mesentery | Calf | Chin | Elbow | Epididymis | Forehead | Jaw | Knee | Laryngopharynx | Liver and intrahepatic duct | Liver/Spleen | Lumbar spine | Lymph Node(s) Int Mammary | Lymph Node(s) Mammary | Lymph Node(s) Axilla | Lymph Node(s) Cervical | Lymph Node(s) Hilar | Lymph Node(s) Inguinal | Lymph Node(s) Supraclav | Lymph Node(s) Pelvic | Mini Mantle | Neck/Chest/Abdomen/Pelvis | Nerve | Ocular Orbits | PA/Lat | Perianus | Popliteal fossa | Round ligament | Sinus(es) | Sinus(es), Maxillary | Small intestine | Spine/Femur | Spine/Femur/Radius | Subcutaneous tissue | Thoracic spine | Thoracic/Lumbar spine | Thyroid gland | Urinary tract | Whole body | Abdomen/Pelvis | Abdominal wall | Antecubital fossa | Aqueous Fluid | Auditory canal | Autonomic nervous system | Bowel | Broad ligament | Bronchus and Lung | Central Line Catheter | Cervical spine | Cervical/Thoracic/Lumbar spine | Chest/Abdomen/Pelvis | Chest/Pelvis | Common duct | Ear canal | Esophagogastric junction | Fundus of stomach | Head - face or neck, NOS | Head/Neck | Head/Neck/Chest/Adb/Pelvis | Hepatic duct | Joints | Tongue, Base of tongue |
Specimen - 2177026 | 3579605v1 | Were specimens collected for NKp30 isoforms correlative biology study | Specimen Natural Killer Cell-Mediated Cytotoxicity Pathway Isoform Correlative Study Collected Yes No Unknown Not Applicable Indicator | the yes/no/unknown/not applicable indicator that asks whether a specimen was collected for a correlative study relating to NKp30 isoforms. | No | Yes | Unknown | Not Applicable |
Specimen - 2177026 | 3544445v1 | Was specimen collected-NKp30 Isoforms | Specimen Natural Killer Cell-Mediated Cytotoxicity Pathway Isoforms Collected Yes No Indicator | the yes/no indicator that asks whether a specimen was collected relating to NKp30 isoforms. | No | Yes |
Specimen - 2177026 | 3334808v1 | Uncharged Slides Count | Specimen Negation Charge Slide Submission Count | A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._An operation in which a term denies or inverts the meaning of another term or construction._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._the quantity of the specified item. | |
Specimen - 2177026 | 3334809v1 | Uncharged Slides Thickness | Specimen Negation Charge Slide Submission Thickness Measurement | A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._An operation in which a term denies or inverts the meaning of another term or construction._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._The dimension between two surfaces of an object, usually the smallest dimension as opposed to the width or the length: also, viscous consistency._Measurement; the size or magnitude of something. | |
Specimen - 2177026 | 2178120v1 | Stored in buffer | Specimen Nipaspirate Buffer Stored Code | TBD | 1 | 0 | 9 | 3 |
Specimen - 2177026 | 2178269v1 | From which breast was the specimen taken? | Specimen Nipaspirate Source Code | TBD | 9 | 1 | 2 | 3 |
Specimen - 2177026 | 2182684v1 | Specify reason | Specimen Not Submitted Reason | the reason the patient's or participant's specimen was not submitted. | Intercurrent illness | Sample not required | Insufficient/scant sample | Patient unable to submit sample | Patient did not keep appointment | Patient request | Statutory holiday | Unsuccessful blood draw | Facility will not release block | Block depleted/insufficient tissue | Other | Institution error | Patient refusal | Not available | Institution won't release | Sample lost or destroyed |
Specimen - 2177026 | 2190544v1 | Not submitted specify | Specimen Not Submitted Specify | the specified reason a specimen was not submitted with the specimen form. | |
Specimen - 2177026 | 2007005v3 | Reason research tissue specimen was not submitted | Specimen Not Submitted Text | the free-text field to specify the reason a research specimen was not submitted. | |
Specimen - 2177026 | 3369252v1 | Was the oral specimen collected | Specimen Oral Cavity Collected Ind-2 | the yes/no question related to sample collected from the patient for analysis or examination from the cavity located at the upper end of the alimentary canal, behind the teeth and gums that is bounded on the outside by the lips, above by the hard and soft palates and below by the tongue. | No | Yes |
Specimen - 2177026 | 3369269v1 | Specify reason | Specimen Oral Cavity Negation Collected Specify | the free-text field related to not having sample collected from the patient for analysis or examination from the cavity located at the upper end of the alimentary canal, behind the teeth and gums that is bounded on the outside by the lips, above by the hard and soft palates and below by the tongue. | |
Specimen - 2177026 | 2548401v1 | Other: | Specimen Other Therapeutic Effect Text | Text description of a therapeutic response other than those identified. | |
Specimen - 2177026 | 3369254v1 | Was the penile/scrotal specimens collected | Specimen Penis Scrotum Collected Ind-2 | the yes/no question related to the sample collected from the patient for analysis or examination from the male organ of urination and copulation or from the musculocutaneous pouch that encloses the testicles. | No | Yes |
Specimen - 2177026 | 3369270v1 | Specify reason | Specimen Penis Scrotum Negation Collected Specify | the free-text field related to not having sample collected from the patient for analysis or examination from the male organ of urination and copulation or from the musculocutaneous pouch that encloses the testicles. | |
Specimen - 2177026 | 3369256v1 | Was the perianal specimen collected | Specimen Perianal Region Collected Ind-2 | the yes/no question related to the sample collected from the patient for analysis or examination from the skin area around the anus. | No | Yes |
Specimen - 2177026 | 2189050v1 | Time period specimen collected | Specimen Period Collected Time | information about the time period during which a specimen was collected. | Approximately 52 weeks post randomization | Approximately 5 years post randomization | Approximately 12 weeks post randomization | Approximately 3 years post randomization | Progression | Surgery | Pre-treatment | During Initial Treatment | During Follow-Up, No. Therapy | At Relapse/Progression | Baseline | Recurrence | Original diagnosis | 2 weeks after final bevacizumab dose | Bevacizumab dose #5 | Bevacizumab dose #3 | 2 weeks after final vaccine dose | Vaccine dose #7 | Vaccine dose #5 | 24 hours after ibrutinib dose | 7 hours after ibrutinib dose | 4 hours after ibrutinib dose | 2 hours after ibrutinib dose | 1 hour after ibrutinib dose | 0-30 mins prior to ibrutinib dose | At end of crossover treatment | After cycle 1 of crossover | At end of initial treatment | After cycle 1 of initial treatment | Cycle 7 week 28 | Cycle 5 week 20 | Cycle 3 week 12 | During chemotherapy | At disease progression | 6 months | 12 months |
Specimen - 2177026 | 2186564v1 | Storage Method | Specimen Preservation Method Type | Cryopreservation means of storing cells, tissues, or organs. | -80 Deg C | LN2 |
Specimen - 2177026 | 2178278v1 | Temperature of specimen during processing: | Specimen Process Temperature During Code | TBD | 9 | 3 | 1 | 2 |
Specimen - 2177026 | 2178292v1 | Temperature of original sample prior to processing: | Specimen Process Temperature Prior Code | TBD | 9 | 2 | 3 | 8 | 1 |
Specimen - 2177026 | 2178293v1 | Approximately how long was the original sample maintained at the above temperature prior to processing (value): | Specimen Process Time Prior Value | TBD | |
Specimen - 2177026 | 2178264v1 | Approximate time elapsed between specimen collection and final storage: (unit) | Specimen Process Time Unit Code | TBD | 9 | 1 | 2 | 3 |
Specimen - 2177026 | 2178294v1 | Approximately how long was the original sample maintained at the above temperature prior to processing (unit): | Specimen Process Time Unit Prior Code | TBD | 9 | 1 | 2 | 3 |
Specimen - 2177026 | 2178263v1 | Approximate time elapsed between specimen collection and final storage: (value) | Specimen Process Time Value | TBD | |
Specimen - 2177026 | 3005015v1 | Volume Received | Specimen Quantity Amount Milliliter Number | Numeric value for the amount or quantity of a specimen received, measured in milliliters (mL). | |
Specimen - 2177026 | 2004951v4.1 | Units | Specimen Quantity UOM | the unit of measure associated with the specimen. | dL | dm | g | L | m | mcg | mcL | mEq | mL | ng | pg | Eq | IU | MMM | Osmol | cc | cm | gravity | kg | mOsmol | mU | mcm | mg | milliunit | mm | mmol | mol | nm | unit | N/A | % | mm3 | VP | mm^3 |
Specimen - 2177026 | 2241682v1 | Number of specimens received | Specimen Received Count | the number of specimens received. | |
Specimen - 2177026 | 64196v3 | Time of Receipt of Specimens | Specimen Received Time | a time of day when a sample of tissue, blood or urine collected for analysis or research is received by a facilty. | |
Specimen - 2177026 | 2191144v1 | Total volume/weight | Specimen Received Total Measurement | the total volume or weight of a specimen received. | |
Specimen - 2177026 | 64920v3 | Patient's initial consent for sharing specimen(s) with outside researchers. | Specimen Research Consent Shared Ind-3 | the yes/no indicator that asks whether the patient has given initial consent to share his/her specimen with outside researchers. | No | Yes | Unknown |
Specimen - 2177026 | 2007102v1 | Site from which specimen was taken | Specimen Site ICD-O Code | an ICD-O topography code associated with an anatomic site from which a tissue or tumor specimen was taken. | C00 | C00-C14 | C00.0 | C00.1 | C00.2 | C00.3 | C00.4 | C00.5 | C00.6 | C00.8 | C00.9 | C01 | C01.9 | C02 | C02.0 | C02.1 | C02.2 | C02.3 | C02.4 | C02.8 | C02.9 | C03 | C03.0 | C03.1 | C03.9 | C04 | C04.0 | C04.1 | C04.8 | C04.9 | C05 | C05.0 | C05.1 | C05.2 | C05.8 | C05.9 | C06 | C06.0 | C06.1 | C06.2 | C06.8 | C06.9 | C07 | C07.9 | C08 | C08.0 | C08.1 | C08.8 | C08.9 | C09 | C09.0 | C09.1 | C09.8 | C09.9 | C10 | C10.0 | C10.1 | C10.2 | C10.3 | C10.4 | C10.8 | C10.9 | C11 | C11.0 | C11.1 | C11.2 | C11.3 | C11.8 | C11.9 | C12 | C12.9 | C13 | C13.0 | C13.1 | C13.2 | C13.8 | C13.9 | C14 | C14.0 | C14.2 | C14.8 | C15 | C15-C26 | C15.0 | C15.1 | C15.2 | C15.3 | C15.4 | C15.5 | C15.8 | C15.9 | C16 | C16.0 | C16.1 | C16.2 | C16.3 | C16.4 | C16.5 | C16.6 | C16.8 | C16.9 | C17 | C17.0 | C17.1 | C17.2 | C17.3 | C17.8 | C17.9 | C18 | C18.0 | C18.1 | C18.2 | C18.3 | C18.4 | C18.5 | C18.6 | C18.7 | C18.8 | C18.9 | C19 | C19.9 | C20 | C20.9 | C21 | C21.0 | C21.1 | C21.2 | C21.8 | C22 | C22.0 | C22.1 | C23 | C23.9 | C24 | C24.0 | C24.1 | C24.8 | C24.9 | C25 | C25.0 | C25.1 | C25.2 | C25.3 | C25.4 | C25.7 | C25.8 | C25.9 | C26 | C26.0 | C26.8 | C26.9 | C30 | C30-C39 | C30.0 | C30.1 | C31 | C31.0 | C31.1 | C31.2 | C31.3 | C31.8 | C31.9 | C32 | C32.0 | C32.1 | C32.2 | C32.3 | C32.8 | C32.9 | C33 | C33.9 | C34 | C34.0 | C34.1 | C34.2 | C34.3 | C34.8 | C34.9 | C37 | C37.9 | C38 | C38.0 | C38.1 | C38.2 | C38.3 | C38.4 | C38.8 | C39 | C39.0 | C39.8 | C39.9 | C40 | C40-C41 | C40.0 | C40.1 | C40.2 | C40.3 | C40.8 | C40.9 | C41 | C41.0 | C41.1 | C41.2 | C41.3 | C41.4 | C41.8 | C41.9 | C42 | C42.0 | C42.1 | C42.2 | C42.3 | C42.4 | C44 | C44.0 | C44.1 | C44.2 | C44.3 | C44.4 | C44.5 | C44.6 | C44.7 | C44.8 | C44.9 | C47 | C47.0 | C47.1 | C47.2 | C47.3 | C47.4 | C47.5 | C47.6 | C47.8 | C47.9 | C48 | C48.0 | C48.1 | C48.2 | C48.8 | C49 | C49.0 | C49.1 | C49.2 | C49.3 | C49.4 | C49.5 | C49.6 | C49.8 | C49.9 | C50 | C50.0 | C50.1 | C50.2 | C50.3 | C50.4 | C50.5 | C50.6 | C50.8 | C50.9 | C51 | C51-C58 | C51.0 | C51.1 | C51.2 | C51.8 | C51.9 | C52 | C52.9 | C53 | C53.0 | C53.1 | C53.8 | C53.9 | C54 | C54.0 | C54.1 | C54.2 | C54.3 | C54.8 | C54.9 | C55 | C55.9 | C56 | C56.9 | C57 | C57.0 | C57.1 | C57.2 | C57.3 | C57.4 | C57.7 | C57.8 | C57.9 | C58 | C58.9 | C60 | C60-C63 | C60.0 | C60.1 | C60.2 | C60.8 | C60.9 | C61 | C61.9 | C62 | C62.0 | C62.1 | C62.9 | C63 | C63.0 | C63.1 | C63.2 | C63.7 | C63.8 | C63.9 | C64 | C64-C68 | C64.9 | C65 | C65.9 | C66 | C66.9 | C67 | C67.0 | C67.1 | C67.2 | C67.3 | C67.4 | C67.5 | C67.6 | C67.7 | C67.8 | C67.9 | C68 | C68.0 | C68.1 | C68.8 | C68.9 | C69 | C69-C72 | C69.0 | C69.1 | C69.2 | C69.3 | C69.4 | C69.5 | C69.6 | C69.8 | C69.9 | C70 | C70.0 | C70.1 | C70.9 | C71 | C71.0 | C71.1 | C71.2 | C71.3 | C71.4 | C71.5 | C71.6 | C71.7 | C71.8 | C71.9 | C72 | C72.0 | C72.1 | C72.2 | C72.3 | C72.4 | C72.5 | C72.8 | C72.9 | C73 | C73-C75 | C73.9 | C74 | C74.0 | C74.1 | C74.9 | C75 | C75.0 | C75.1 | C75.2 | C75.3 | C75.4 | C75.5 | C75.8 | C75.9 | C76 | C76.0 | C76.1 | C76.2 | C76.3 | C76.4 | C76.5 | C76.7 | C76.8 | C77 | C77.0 | C77.1 | C77.2 | C77.3 | C77.4 | C77.5 | C77.8 | C77.9 | C80 | C80.9 |
Specimen - 2177026 | 2220552v1 | Storage Temperature (Centigrade) | Specimen Storage Temperature Number | The temperature at which the specimen was stored expressed in degrees Celsius. | |
Specimen - 2177026 | 2547385v1 | Storage Temperature Type | Specimen Storage Temperature Type | The environment in which the specimen is stored. | Refrigerated | Ambient | Frozen | Other | N/A |
Specimen - 2177026 | 2195145v1 | Notes | Specimen Submission Comments Text | A free text field relating to a specimen submission. | |
Specimen - 2177026 | 2190535v1 | Submission status | Specimen Submission Status | the status of specimen submission with the specimen form. | Submitted | Not submitted |
Specimen - 2177026 | 2990438v1 | Type of tissue submitted | Specimen Submission Type | Text term to describe the form in which biospecimen material was submitted for review or evaluation. | Paraffin block(s) | Slide(s) |
Specimen - 2177026 | 2003954v4 | Number of specimens submitted | Specimen Submitted Count | the number of specimens submitted. | |
Specimen - 2177026 | 2183870v1 | Was a specimen shipped | Specimen Submitted Ind-2 | the yes/no indicator that asks whether a specimen was shipped or submitted. | No | Yes |
Specimen - 2177026 | 2004257v3 | Reasons for specimen submission | Specimen Submitted Reason | the reason a specimen was submitted. | Prestudy submission | Complete remission/response specimen | Relapse/recurrence specimen | Other specimen, specify |
Specimen - 2177026 | 2007103v1 | Paperwork sent | Specimen Submitted Report Type | a report or form which is included with a specimen shipment for analysis. | Specimen Shipping Form | Copy of Pathology Report | Copy of Pathology Checklist | Copy of Operative Report |
Specimen - 2177026 | 2658018v1 | Adequacy | Specimen Submitted Sufficient Text Type | The values used to describe whether bits of tissue, blood or urine that is taken or used for research purposes meets the condition or quantitative measure necessary for evaluation. | Adequate for evaluation | Inadequate for evaluation |
Specimen - 2177026 | 2006911v1 | Specimen Type | Specimen Submitted Type | the type of specimen submitted. | Periph Bld Heparin CPT | Periph Bld Red Grey SST | Frozen Primary Tumor | RPMI Tumor Fresh | PBS Tumor Fresh | Peripheral Blood, PAXgene DNA | Plasma/Serum heparin | Peripheral Blood, citrate CPT | Periph Bld Red Top | Periph Bld Heparin Green Top | Peripheral Blood, EDTA purple top tube | Peripheral Blood, DNA PAXgene tube | Peripheral Blood, RNA PAXgene tube | Plasma, EDTA purple top tube | Serum, Red top tube | Tumor tissue, snap frozen | Periph Bld Red Grey SST | Plasma/Serum Citrate CPT | Periph Bld Immunicon | Serum, SST | Plasma, EDTA | Peripheral blood, ACD | Unstained slides from breast tumor area | Unstained slides from residual breast tumor | Representative block of residual tumor | Core biopsy tissue in RNAlater | Formalin-fixed tumor tissue | OCT-embedded tumor/tissue | PBMC | EDTA Lavender Top Tube | Serum Red Top | RBC pellet | 7.5 cc Cell Saver | 5 cc Green | 10 ml SST/Tiger | Pharmacogenomics EDTA (Purple Top) | 10 ml CPT | Blue Top CPT Tube | Purple Top EDTA Tube | SST Red/Gray Top Tube | Tumor, fresh in PBS | Frozen section | Peripheral blood stem cell harvest | Karyotype | Bone marrow core biopsy | Red blood cells | Leukocytes | 5 cc Green Top | 5 ml EDTA Purple Top | H&E slide | Cores from normal prostate tissue | Cores from prostate tumor tissue | Normal block | Peritoneal surface tumor | Primary colon tumor | Paraffin embedded surgical block | Sections on superfrost plus slides | Other | Platelet-poor plasma | Whole Blood (EDTA) (2 x 5ml) | Whole blood (EDTA) (1 x 7ml) | Frozen serum | Frozen Plasma | Bone marrow | Other | Peripheral blood | Serum | Urine | Tissue Microarray | SNAP frozen non-malignant tissue | SNAP frozen tumor tissue | Slides of tumor tissue | Bone marrow aspirate | Bone marrow biopsy | Bone marrow (aspirate smear) | Bone marrow (biopsy section) | Peripheral blood smear slide | Paraffin blocks | Stained slides | Unstained slides | Cytology slides (stained) | Cytology slides (unstained) | Snap frozen tumor/tissue | Blood | JT-Other | JR-Buccal Scrapings | JL-Saliva | JC-CSF | JH-Punch | JF-Fresh Tissue | JB-Paraffin Block | JN-Unstained Slides | JU-Urine | JW-Whole Blood | JX-Buffy | JP-Plasma | JS-Serum | Fresh Frozen Tumor Tissue | Peripheral blood-Frozen | Peripheral blood-Fresh | Plasma | Nipple Aspirate Fluid | Breast Adipose Tissue | DNA | Frozen metastatic tissue | None | Cells | Whole blood (7-10 mL green top tube) | Plasma (from blood collected in 10 mL lavender top tube) | Bone marrow smear | Formalin fixed paraffin embedded tissue block | Punch biopsies from FFPE block | Unstained superfrost plus slides | Whole blood | Buffy coat | Fixed tissue | Frozen tissue | Tumor block | Whole venous blood | Citrated plasma | EDTA plasma | Tissue |
Specimen - 2177026 | 2722734v3 | Other, specify | Specimen Therapeutic Effect | the free-text field to specify the pathologic change in the specimen tissues that show evidence of treatment with cancer therapy prior to collection of the specimen. | |
Specimen - 2177026 | 64781v3 | Does analysis of tissue show evidence of therapeutic effects? | Specimen Therapeutic Effect Ind-3 | the yes/no indicator that asks whether a pathologic specimen tissues show evidence of treatment with cancer therapy prior to collection of the specimen. | No | Yes | Unknown |
Specimen - 2177026 | 2548397v1 | Evidence of therapeutic effects? | Specimen Therapeutic Effect Type | Terms to identify evidence of therapeutic effects on a specimen's histologic findings. | No | Apocrine/eosinophilic | Hystiocytoid | Cytoplasmic vacuolation | Lobular appearance | Other |
Specimen - 2177026 | 65085v3 | Percent of Tissue Examined | Specimen Tissue Examined Percentage Amount | the measurement by percentage of the amount of tumor tissue examined and analyzed for cancer cells. | |
Specimen - 2177026 | 2178123v1 | Is specimen a microdissected tissue specimen? | Specimen Tissue Microdissected Code | TBD | 1 | 0 | 9 | 3 |
Specimen - 2177026 | 2178261v1 | Associated pre-invasive neoplastic changes: | Specimen Tissue Pre-invasive Neoplastic Change Code | TBD | 999 | 97 | 4 | 12 | 11 | 1 | 2 | 3 | 5 | 6 | 7 | 8 | 9 | 10 |
Specimen - 2177026 | 2178262v1 | Associated pre-invasive neoplastic changes: (Other, specify) | Specimen Tissue Pre-invasive Neoplastic Change Other Text | TBD | |
Specimen - 2177026 | 2178266v1 | Method of preservation | Specimen Urine Preservation Code | TBD | 9 | 8 | 1 | 2 |
Specimen - 2177026 | 2178197v1 | Time period of original urine collection, specify | Specimen Urine Time Period Other Text | TBD | |
Specimen - 2177026 | 2190876v1 | Other, specify | Speciment Biological Storage Specify | the specified type of biological storage of a specimen. | |
Specimen - 2177026 | 2192810v1 | Reason for Submission | Submission Reason Description Text | The description indicating the reason for the specimen submittal. | 1st Submission While On Study | Subsequent Submission While On Study |
Specimen - 2177026 | 2502965v1 | Specimen | Tissue Specimen Submitted Type | The type of tissue specimen submitted. | Fresh Frozen Surgical Specimen | 2 H&E Stained Representative Slides | 1 paraffin embedded tissue block |
Specimen - 2177198 | 2003907v3 | Description of Sample | Sample Description Text | Text description of a sample or specimen. | |
Specimen - 2177198 | 2222728v1 | Sample Type | Sample Source Text Name | Text name of cell source from which a sample was secured. | Buccal Smear | Serum | Sputum | N/A | Bronchial Washing | Buccal Brushing | NPBL | Pleural | Saliva | Tissue | NAF | Ductal Epithelial Cells |
Specimen - 2177198 | 3364862v1 | Was a specimen (whole blood or plasma and PBMC) collected APOBEC3G and/or KSHV Viral Load | Specimen APOBEC3G Gene Human Herpesvirus 8 Collection Ind-2 | the yes/no question related to collection of specimen for a gene which may play a role in cell growth and the cell cycle or a gammaherpesvirus that contributes to the development of Kaposi sarcoma. | No | Yes |
Specimen - 2177198 | 3364868v1 | Please specify the reason | Specimen APOBEC3G Gene Human Herpesvirus 8 Negation Collection Reason | an explanation related to not collecting specimen for a gene which may play a role in cell growth and the cell cycle or a gammaherpesvirus that contributes to the development of Kaposi sarcoma. | Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error |
Specimen - 2177198 | 3364869v1 | Other, specify | Specimen APOBEC3G Gene Human Herpesvirus 8 Negation Collection Specify | the free-text field related to not collecting specimen for a gene which may play a role in cell growth and the cell cycle or a gammaherpesvirus that contributes to the development of Kaposi sarcoma. | |
Specimen - 2177198 | 2178272v1 | Age at specimen collection | Specimen Age Collected Value | Participant's age in years at the time of specimen collection. | |
Specimen - 2177198 | 2178287v1 | Number of aliquots/slides stored | Specimen Aliquots Slides Stored Value | TBD | |
Specimen - 2177198 | 2178200v1 | Approximate total amount remaining unit | Specimen Amount Remaining Unit Code | Unit of quantity of specimen currently available at site. | 3 | 8 | 4 | 5 | 6 | 7 | 2 | 1 |
Specimen - 2177198 | 2178271v1 | Approximate total amount remaining | Specimen Amount Remaining Value | Quantitative value of specimen currently available at site. | |
Specimen - 2177198 | 2178215v1.1 | Approximate total amount stored (Unit) | Specimen Amount Stored Unit Code | Unit of the quantity of specimen originally stored. | 3 | 8 | 4 | 5 | 6 | 7 | 2 | 1 |
Specimen - 2177198 | 2178286v1 | Approximate total amount stored | Specimen Amount Stored Value | Quantitative value of specimen originally stored. | |
Specimen - 2177198 | 2178121v1 | Specimen available | Specimen Available Code | Flag to determine if there is some specimen available/remaining at the site. | 1 | 0 | 9 | 3 |
Specimen - 2177198 | 2178277v1 | Cell Count | Specimen Bone Marrow Cell Count Value | The number of cells (in millions) in a stored cell specimen taken from bone marrow. | |
Specimen - 2177198 | 2178276v1 | Percentage of Blast cells | Specimen Bone Marrow Plasma Value | Percentage of plasma cells of the total cells stored from a bone marrow specimen collection. A plasma cell is a type of white blood cell that produces antibodies. | |
Specimen - 2177198 | 3321254v1 | Will/has the LBC specimen be(en) drawn in the timeframe of 4 days before through 7 days after entry? | Specimen Cervical Occurrence Collection Ind-2 | A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._Relating to a neck, or cervix, in any sense._Occurrence; an instance of something happening._The act of gathering things together; having been brought together in one place._the yes/no question related to specimen characteristics. | No | Yes |
Specimen - 2177198 | 3334801v1 | Charged Slides Count | Specimen Charge Slide Submission Count | A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._the quantity of the specified item. | |
Specimen - 2177198 | 3334804v1 | Charged Slides Thickness | Specimen Charge Slide Submission Thickness Measurement | A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._The dimension between two surfaces of an object, usually the smallest dimension as opposed to the width or the length: also, viscous consistency._Measurement; the size or magnitude of something. | |
Specimen - 2177198 | 2178284v1 | Specimen collected | Specimen Collected Code | Type of specimen that was collected from participant. | 16 | 3 | 4 | 6 | 11 | 14 | 17 | 18 | 19 | 20 | 1 | 2 | 5 | 7 | 8 | 9 | 10 | 12 | 13 | 15 |
Specimen - 2177198 | 2178199v1 | Date of specimen collection | Specimen Collection Text | Date on which the specimen was collected. | |
Specimen - 2177198 | 2178279v1 | Concentration in ?g/ml | Specimen Concentration Value | Concentration of specimen stored | |
Specimen - 2177198 | 2178274v1 | Number of days from specimen collected date since cancer diagnosis date | Specimen Day Cancer Diagnosis Value | Number of days between the date the cancer was diagnosed pathologically, and the date on which the tissue specimen was collected. | |
Specimen - 2177198 | 2178273v1 | Number of days since 1st specimen collected | Specimen Day Collected Value | Calculated value at site in number of days. ([Specimen Collected Date]-[Date of 1st specimen collected]) | |
Specimen - 2177198 | 2178288v1 | Final storage | Specimen Final Store Code | Temperature specimen was ultimately stored at. | 97 | 1 | 3 | 4 | 5 | 6 |
Specimen - 2177198 | 2178194v1 | Final storage (Other, specify) | Specimen Final Store Other Text | Temperature specimen was ultimately stored at that does not appear on the pick-list. | |
Specimen - 2177198 | 3357963v1 | Was a specimen (PBMC or whole blood) collected for HIV DNA quantification | Specimen Human Immunodeficiency Virus DNA Collection Ind-2 | the yes/no question related to collection of specimen of the long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell for the virus isolated and recognized as the etiologic agent of AIDS. | No | Yes |
Specimen - 2177198 | 3357969v1 | Please specify the reason | Specimen Human Immunodeficiency Virus DNA Negation Collection Reason | an explanation related to not collecting specimen of the long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell for the virus isolated and recognized as the etiologic agent of AIDS. | Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error |
Specimen - 2177198 | 3357970v1 | Other, specify | Specimen Human Immunodeficiency Virus DNA Negation Collection Specify | the free-text field related to not collecting specimen of the long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell for the virus isolated and recognized as the etiologic agent of AIDS. | |
Specimen - 2177198 | 3357897v1 | Was a specimen (plasma or whole blood) collected for HIV-1 RNA levels | Specimen Human Immunodeficiency Virus Ribonucleic Acid Collection Ind-2 | the yes/no question related to collection of specimen of the single-stranded long chain of nucleotides containing ribose for the virus isolated and recognized as the etiologic agent of AIDS. | No | Yes |
Specimen - 2177198 | 3357898v1 | Please specify the reason | Specimen Human Immunodeficiency Virus Ribonucleic Acid Negation Collection Reason | An explanation related to not collecting specimen of the single-stranded long chain of nucleotides containing ribose for the virus isolated and recognized as the etiologic agent of AIDS. | Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error |
Specimen - 2177198 | 3357959v1 | Other, specify | Specimen Human Immunodeficiency Virus Ribonucleic Acid Negation Collection Specify | the free-text field related to not collecting specimen of the single-stranded long chain of nucleotides containing ribose for the virus isolated and recognized as the etiologic agent of AIDS. | |
Specimen - 2177198 | 3365921v1 | Was a specimen (plasma) collected for Single Copy HIV Viral Load | Specimen Human Immunodeficiency Virus Single Copy Viral Load Collection Ind-2 | the yes/no question related to collecting a specimen for a single copy of number of viral particles in a sample of blood plasma of the cytopathic retrovirus. | No | Yes |
Specimen - 2177198 | 3365922v1 | Please specify the reason | Specimen Human Immunodeficiency Virus Single Copy Viral Load Negation Collection Reason | an explanation related to not collecting a specimen for a single copy of number of viral particles in a sample of blood plasma of the cytopathic retrovirus. | Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error |
Specimen - 2177198 | 3365923v1 | Other, specify | Specimen Human Immunodeficiency Virus Single Copy Viral Load Negation Collection Specify | the free-text field specifying information related to not collecting a specimen for a single copy of number of viral particles in a sample of blood plasma of the cytopathic retrovirus. | |
Specimen - 2177198 | 2183027v2 | Biopsy Specimen Numbers Biopsy Specimen Numbers | Specimen Identifier Number | The number indicating the sample. | |
Specimen - 2177198 | 3364876v1 | Was a specimen (tissue punch biopsy) collected for Immunohistochemistry | Specimen Immunohistochemical Test Collection Ind-2 | the yes/no question related to collection of specimen for a diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope. | No | Yes |
Specimen - 2177198 | 3364877v1 | Please specify the reason | Specimen Immunohistochemical Test Negation Collection Reason | an explanation related to not collecting a specimen for a diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope. | Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error |
Specimen - 2177198 | 3364878v1 | Other, specify | Specimen Immunohistochemical Test Negation Collection Specify | the free-text field to specify as related to not collecting a specimen for a diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope. | |
Specimen - 2177198 | 2178291v1 | Embedding material used? | Specimen Preparation Embed Code | Indication of embedding material used in processing cells or tissue prior to storage. | 7 | 1 | 2 |
Specimen - 2177198 | 2178196v1 | Embedding material used (Other, specify)? | Specimen Preparation Embed Other Text | TBD | |
Specimen - 2177198 | 2178290v1 | If fixed, Fixative used? | Specimen Preparation Fixative Code | Indication of the fixative used in fixing the tissue specimen or cells collected. | 7 | 1 | 2 | 3 |
Specimen - 2177198 | 2178195v1 | If fixed, Fixative used (Other, specify)? | Specimen Preparation Fixative Other Text | TBD | |
Specimen - 2177198 | 2178289v1 | Method of preparation | Specimen Preparation Method Code | TBD | 97 | 3 | 1 | 2 |
Specimen - 2177198 | 2178213v1 | Method of preparation (Other, specify) | Specimen Preparation Method Other Text | Indication of how the cells or tissue were prepared prior to storing, other than the methods listed in the pick-list. | |
Specimen - 2177198 | 3073066v2 | Was submitted sample prior to ANY radiation or drug therapy? | Specimen Prior Intervention Submitted Indicator | Records if sample was obtained prior to ANY radiation or drug treatment. | Data Not Available | Unknown | Yes | No |
Specimen - 2177198 | 3364890v1 | Was a specimen (tissue punch biopsy) collected for RNA Isolation | Specimen Ribonucleic Acid Collection Ind-2 | the yes/no question related to collecting a specimen for a single-stranded long chain of nucleotides containing ribose. | No | Yes |
Specimen - 2177198 | 3364888v1 | Please specify the reason | Specimen Ribonucleic Acid Negation Collection Reason | an explanation related to not collecting a specimen for a single-stranded long chain of nucleotides containing ribose._ | Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error |
Specimen - 2177198 | 3364889v1 | Other, specify | Specimen Ribonucleic Acid Negation Collection Specify | the free-text field related to not collecting a specimen for a single-stranded long chain of nucleotides containing ribose. | |
Specimen - 2177198 | 2912070v1 | Sample Type | Specimen Sampled Source Type | Text name of cell source from which a sample was secured. | Non-lung specimen | Washing/Lavage | Lung resection/FNA | Brushing | Sputum | Biopsy from bronch |
Specimen - 2177198 | 3228020v1 | Sample Type | Specimen Sampled Type | Text descriptor of body fluid or tissue being sampled. | Pleural Effusion | Serum | Whole Blood | Urine | Saliva | Hair | CD33 Myeloid Cells | CD3 Lymphoid Cells | Bone Marrow | Apheresis Cells | Abdominal Effusion | Peripheral Blood Mononuclear Cells (PBMC) | Circulating Tumor Cells | Tumor Tissue | Pericardial Effusion | Normal Tissue | Pax Gene RNA | Lymph Node | Leukocytes (White Blood Cells) | Cerebrospinal Fluid (CSF) | Cell Block | CD14/CD15 Myeloid Cells | Macrophages | Lymphocytes | Natural Killer Cells (NK Cells) | CD4 Cells | Stool | Fresh Tissue | Archival Tissue | Plasma |
Specimen - 2177198 | 2004162v4 | Specimen Sampled | Specimen Sampling Type | Type of specimen/body tissue being sampled, using an enumerated set of values. | N | R | F | E | W | H | G | J | Z | B | S | P | C | U | M | A | O | Y | L | D | T | V |
Specimen - 2177198 | 2178119v1 | Was blood present in stool sample | Specimen Stool Blood Present Code | TBD | 1 | 0 | 9 | 3 |
Specimen - 2177198 | 2178117v1 | Was sample collected using a bowel prep | Specimen Stool Bowel Prep Code | TBD | 1 | 0 | 9 | 3 |
Specimen - 2177198 | 2178267v1 | If yes, number of days since bowel prep | Specimen Stool Days Bowel Prep Value | TBD | |
Specimen - 2177198 | 2178268v1 | Morphology of sample | Specimen Stool Morphology Code | TBD | 1 | 2 | 3 | 5 | 4 |
Specimen - 2177198 | 2178118v1 | Was sample tested for presence of occult blood? | Specimen Stool Occult Blood Code | TBD | 1 | 0 | 9 | 3 |
Specimen - 2177198 | 2178285v1 | Specimen stored (type) | Specimen Stored Code | Type of specimen ultimately stored after processing the specimen that was collected. | 18 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 |
Specimen - 2177198 | 2220480v1 | Method | Specimen Testing Method Text Name | Text name for testing method used on samples and specimens. | Biochemical | Immunohistochemical | Immunohistochemical and FISH |
Specimen - 2177198 | 2178281v1 | Method of acquisition | Specimen Tissue Acquisition Method Code | TBD | 97 | 1 | 2 | 3 | 4 |
Specimen - 2177198 | 2178205v1 | Method of acquisition (Other,specify) | Specimen Tissue Acquisition Other Text | TBD | |
Specimen - 2177198 | 2178206v1 | Anatomical site | Specimen Tissue Anatomical Site Code | TBD | 999 | 97 | 13 | 1 | 5 | 14 | 22 | 25 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 2 | 3 | 4 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
Specimen - 2177198 | 2178122v1 | Angiogenic changes present? | Specimen Tissue Angiogenic Change Code | TBD | 1 | 0 | 9 | 3 |
Specimen - 2177198 | 2178275v1.1 | Degree of invasiveness | Specimen Tissue Degree Invasive Code | Degree to which neoplasm has the ability to infiltrate and actively destroy surrounding tissue. | 3 | 4 | 5 | 6 | 7 | 1 |
Specimen - 2177198 | 2178202v1 | If Pre-invasive neoplasia, specify: | Specimen Tissue Degree Invasive Neoplasia Code | TBD | 1 | 2 | 3 |
Specimen - 2177198 | 2178280v1.1 | If invasive tumor, specify | Specimen Tissue Degree Invasive Tumor Code | Type of invasive tumor. | 9 | 1 | 2 |
Specimen - 2177198 | 2178203v1 | Histologic classification (WHO) | Specimen Tissue Histologic Classification Code | TBD | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 999 | 13 | 97 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
Specimen - 2177198 | 2178204v1 | Histologic classification (WHO) (Other, specify) | Specimen Tissue Histologic Classification Other Text | TBD | |
Specimen - 2177198 | 2178209v1 | Histologic classification (WHO), (Mixed epithelial carcinoma, specify components) | Specimen Tissue Histologic Combined/Mixed Text | TBD | |
Specimen - 2177198 | 2178260v1 | Histologic grade (WHO): | Specimen Tissue Histologic Grade Code | TBD | 9 | 999 | 1 | 2 | 3 | 4 | 5 | 6 |
Specimen - 2177198 | 2178212v1 | Histologic classification (WHO), (Mixed malignant germ cell tumor, specify components) | Specimen Tissue Histologic Mixed Malignant Text | TBD | |
Specimen - 2177198 | 2178210v1 | Histologic classification (WHO), (Mixed epithelial carcinoma, specify components) | Specimen Tissue Histologic Mixed/Epithelial Text | TBD | |
Specimen - 2177198 | 2178211v1 | Histologic classification (WHO), Teratoma immature, specify components) | Specimen Tissue Histologic-Teratoma Text | TBD | |
Specimen - 2177198 | 2178207v1 | If lymph node, specify | Specimen Tissue Lymph-Node Code | TBD | 999 | 97 | 1 | 2 | 3 | 4 | 8 | 5 | 6 | 7 |
Specimen - 2177198 | 2178208v1 | If lymph node, specify (Other, specify) | Specimen Tissue Lymph-Node Text | TBD | |
Specimen - 2177198 | 2178214v1.2 | Organ site | Specimen Tissue Organ Site Code | Body organ/site the specimen was taken from. | 97 | 1 | 5 | 14 | 25 | 2 | 3 | 4 | 6 | 7 | 8 | 9 | 10 | 12 | 15 | 16 | 17 | 19 | 20 | 21 | 24 | 23 | 26 |
Specimen - 2177198 | 2178201v1 | Organ site, specify | Specimen Tissue Organ Site Other Text | Body organ/site the specimen was taken from that does not appear on the pick-list. | |
Specimen - 2177198 | 3326456v1 | Indicate the level/status that was determined centrally and reported to you. | Specimen Tumor Marker Central Pathology Review Status | the status of the outcome of the process by which specimens are sent to a central lab for confirmatory analysis for tumor markers using standardized methods and result criteria in order to minimize inter-reviewer differences thereby improving the accuracy of pathology data. | 3 - Undeterminable | 2 - One or both intact | 1- lp and 19q deleted |
Specimen - 2185468 | 2200800v1 | Deep Margins | Specimen Deep Margin Status Type | Text represenation to describe the status of the deep margins of a specimen. | Negative | Positive Cancer | Positive Dysplasia |
Specimen - 2185468 | 2200794v1 | Enface Margins | Specimen Enface Margin Status Type | Text represenation to describe the status of the enface (facing) margins of a specimen. | Negative | Positive Cancer | Positive Dysplasia |
Specimen - 2185468 | 2200797v1 | Radial Margins | Specimen Radial Margin Status Type | Text represenation to describe the status of the radial (along the central axis of the body) margins of a specimen. | Negative | Positive Cancer | Positive Dysplasia |
Specimen - 2192308 | 2183043v1 | Date Specimen Analyzed | Specimen Analyzed Date | The date the specimen was analyzed. | |
Specimen - 2192920 | 2192919v1 | Required Materials | Blood Specimen Submission Materials Required Type | The materials required for a blood specimen submission. | 1 Tube Frozen |
Specimen - 2192920 | 2192955v1 | Required materials | Pathology Slide Submission Materials Required Type | Identifiying the types of materials required for a pathology slide submission. | Copy of Pathology Report | Copy of Operative Report | 3 Permanent Tissue Sectioned Slides | Anatomic Location of Tissue Collection |
Specimen - 2192920 | 2261856v1 | Number of samples analyzed (total) | Specimen Analysis Count | Numeric count of the total number of tissue samples/specimens analyzed. | |
Specimen - 2192920 | 2261844v1 | Number of patients from whom samples have been analyzed | Specimen Analysis Patient Count | Numeric count of the number of patients from whom tissue samples have been analyzed. | |
Specimen - 2192920 | 2192951v1 | Are blocks available for future studies? | Specimen Blocks Future Indicator | A yes/no/unknown response to a question that asks whether blocks are available for future studies. | Unknown | Yes | No |
Specimen - 2192920 | 3308922v1 | Date block sent | Specimen Blocks Submission Date | Calendar date on which a specimen block was sent to another organization (or its laboratory). | |
Specimen - 2192920 | 2192947v1 | Are blocks included in this submission? | Specimen Blocks Submission Indicator | A yes/no/unknown response to a question that asks whether blocks are included in the submission. | Unknown | Yes | No |
Specimen - 2192920 | 2192926v1 | Required materials | Specimen Materials Required Indicator | A yes/no response to a question that asks whether or not a specific specimen material is required. | No | Yes |
Specimen - 2192920 | 2192929v1 | Required materials | Tissue Frozen Specimen Submission Materials Required Type | Materials required in a frozen tissue submission. | 1 - 10 Vials Frozen Tissue | Copy of Pathology Report | Copy of Operative Report | Anatomic Location of Tissue Form |
Specimen - 2241613 | 3664650v1 | Specimen Label | Blood Specimen Label Type | The type of blood specimen label. | 8ml CPT tube | 2.5ml RNA Paxgene | 3ml greentop |
Specimen - 2241613 | 3220470v1 | Type of Blood Sample | Blood Specimen Source | The source of the blood sample. | Blood Draw | Scavenge |
Specimen - 2241613 | 3219459v1 | Specimen Type | Blood Specimen Type | The type of the blood specimen. | P | HS | V | A | Unknown |
Specimen - 2241613 | 2506815v1 | Specimen Type | Blood Specimen Type | The name of the blood specimen. | Estrone | Estradiol | Testosterone | PSA (total, free) | PSA (total) | PSA (free) | Dihydrotestosterone |
Specimen - 2241613 | 3219439v1 | Blood Volume | Blood Specimen Volume | The volume of the blood sample. | |
Specimen - 2241613 | 2555521v1 | Specimen Accession Number java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A control number unique to an object, used to identify it among the other objects in a collection._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2513680v1 | Specimen Activity Status Activity Status Text Type | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The state of being active; any specific activity.:A condition or state at a particular time._An action taken in pursuit of an objective; the state of being active._A condition or state at a particular time._Text; the words of something written._Type; a subdivision of a particular kind of thing. | Disable | Active | Close | |
Specimen - 2241613 | 2553320v1 | Specimen Activity Status java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The state of being active; any specific activity.:A condition or state at a particular time._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2241622v1 | Were specimen(s) submitted to the ACOSOG Central Specimen Bank | Specimen American College of Surgeons Oncology Group Submitted Ind-2 | the yes/no indicator that asks whether specimen(s) were submitted to the ACOSOG Central Specimen Bank. | No | Yes |
Specimen - 2241613 | 2453234v1 | Time Specimen Analyzed | Specimen Analyzed Time | The time the specimen was analyzed. | |
Specimen - 2241613 | 2008276v2 | Anterior-deep specimen dimension (cm) | Specimen Anterior Posterior Centimeter Measurement | Numeric value to represent the anterior-posterior dimension of a specimen. | |
Specimen - 2241613 | 2547692v1 | Time of Specimen Arrival in Pathology | Specimen Arrival In Pathology Time | The time the specimen arrived in pathology. | |
Specimen - 2241613 | 2830254v1 | Specimen Available Quantity java.lang.Double | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Available; obtainable or accessible and ready for use or service.:Quantity; how much there is of something that you can measure._Generic value domain for a primitive java datatype that is a Double-precision floating point number (64-bit IEEE 7540). | ||
Specimen - 2241613 | 2513676v1 | Specimen Available java.lang.Boolean | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Available; obtainable or accessible and ready for use or service._Generic value domain for a primitive java datatype that is a Boolean value (true or false). | ||
Specimen - 2241613 | 2513679v1 | Specimen Barcode java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A machine-readable representation of information in a visual format on a surface. Originally barcodes stored data in the widths and spacings of printed parallel lines, but today they also come in patterns of dots, concentric circles, and hidden in images (Wikipedia)._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2470366v1 | Date Baseline Surgical Gleason Score Obtained | Specimen Baseline Gleason Score Date | the date when prostate gland tissue is collected at the start of a clinical trial to identify existing microscopic patterns of cancerous glands and morphology with the Gleason grading system. | |
Specimen - 2241613 | 3153685v1 | Specimen Type | Specimen Biospecimen Type | The name that describes material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. | Serum Ca 15-3 | Serum CRP | Research blood |
Specimen - 2241613 | 2715529v1 | Specimen Biospecimen Type HL7.ConceptDescriptor | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The type of a material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes. This includes particular types of cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory substances._Generic value domain for HL7 concept descriptors that represent any kind of concept usually by giving a code defined in a code system. | ||
Specimen - 2241613 | 2859489v1 | Accession Number including a block number | Specimen Block Accession Number | the control number and unique section identifier for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination, with or without an enhancement such as staining. | |
Specimen - 2241613 | 2859529v1 | Is the accession number (including block number) of the block used to determine the IHC HER2 result available | Specimen Block Accession Number Immunohistochemistry Staining Method HER2/neu Block Accession Number Present Ind-2 | the yes/no indicator whether the control number and unique section identifier are present for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination, with or without an enhancement, using immunohistochemical staining techniques (allow for the visualization of antigens via the sequential application of a specific antibody to the antigen (primary antibody), a secondary antibody to the primary antibody and an enzyme complex with a chromogenic substrate) to determine HER2 (the ERBB2 Gene at 17q21.1 encodes ERRB2 Receptor Protein Tyrosine Kinase, a 185 kD type I membrane glycoprotein that controls cell growth with features similar to EGFR. Ligand binding increases phosphorylation of tyrosine residues) status. | No | Yes |
Specimen - 2241613 | 3025051v1 | Number of Blocks | Specimen Block Received Count | Numeric value to represent the number of specimen blocks received by an institution or organization. | |
Specimen - 2241613 | 3308921v1 | Date block obtained | Specimen Block Received Date | Calendar date on which a specimen block was received from the laboratory of an organization. | |
Specimen - 2241613 | 1744v2.31 | Specimen Block Count | Specimen Block Submission Count | the number of specimen blocks submitted. | |
Specimen - 2241613 | 2913992v1 | Number Blocks/Slides | Specimen Blocks Slide Submission Count | the quantity of a preserved bit of tissue or blood or urine submitted for research purposes on block or slide. | |
Specimen - 2241613 | 2990413v1 | Were slides/paraffin blocks able to be sent? | Specimen Blocks Slide Submission Indicator | Text term to indicate that biospecimen tissue blocks or slides were prepared and submitted for review and evaluation. | Yes | No |
Specimen - 2241613 | 2178254v1 | Additive used in blood collection? | Specimen Blood Additive Code | TBD | 97 | 99 | 1 | 2 | 3 | 4 |
Specimen - 2241613 | 2178255v1 | Additive used in blood collection (other, specify) | Specimen Blood Additive Other Text | TBD | |
Specimen - 2241613 | 2178258v1 | Original blood sample was collected as: | Specimen Blood Collected as Code | TBD | 9 | 1 | 2 |
Specimen - 2241613 | 2178265v1 | Time period of original urine collection | Specimen Blood Fast Code | TBD | 9 | 1 | 2 |
Specimen - 2241613 | 2178256v1 | If Heparin, specify: | Specimen Blood Heparin Code | TBD | 97 | 99 | 1 | 2 | 3 |
Specimen - 2241613 | 2178257v1 | If Heparin, specify (other, specify): | Specimen Blood Heparin Other Text | TBD | |
Specimen - 2241613 | 2719843v1 | ER status by central pathology review | Specimen Breast Carcinoma Estrogen Receptor Status Cental Pathology Review Status | th status or objective appraisal by a centralized laboratory of the estrogen receptor level measured in a primary tumor or in metastases tissue specimen taken from a carcinoma arising from the breast according to standardized procedures and results. | Negative | Positive | Unknown | NOT DONE |
Specimen - 2241613 | 2719848v1 | PgR status by central pathology review | Specimen Breast Carcinoma Progesterone Receptor Status Cental Pathology Review Status | th status or objective appraisal by a centralized laboratory of the progesterone receptor level measured in a primary tumor or in metastases tissue specimen taken from a carcinoma arising from the breast according to standardized procedures and results. | Negative | Positive | Unknown | NOT DONE |
Specimen - 2241613 | 2719842v1 | Was marker status changed by central pathology review | Specimen Breast Carcinoma Tumor Marker Change Cental Pathology Review Ind-2 | the yes/no indicator whether there was a change in the presence or status of a tumor maker found in a primary tumor or in metastases tissue specimen taken from a carcinoma arising from the breast through the systematic, objective appraisal by a centralized laboratory according to standardized procedures and results. | No | Yes |
Specimen - 2241613 | 64335v3 | Bronchus specify | Specimen Bronchus Cell Source Specify | a text field to describe a source or location from which a tissue or fluid sample is taken to examine cellular composition of the large air passages that lead from the trachea to the lungs. | |
Specimen - 2241613 | 2727273v1 | Specimen CaBIG Identifier java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A globally unique identifier deployed by systems that are compatible with the caGrid._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2897734v1 | Cellularity | Specimen Cellularity Category | Category to represent the percent of the tissue in a sample that is occupied by the solid tissue normal. | low | medium | high | unknown |
Specimen - 2241613 | 2940273v1 | Date results received from Central Lab | Specimen Central Laboratory Result Received Date | the date results were received from a Central Lab. | |
Specimen - 2241613 | 2003948v3 | Date material(s) sent to central laboratory | Specimen Central Laboratory Submission Date | the date a specimen or related material was sent to the Central Lab. | |
Specimen - 2241613 | 3379234v1 | CSF collection time point: | Specimen Cerebrospinal Fluid Collection Timepoint Type | A specific point in the time continuum, including those established relative to an event where a portion of the fluid flowing around the brain and spinal cord obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis. | Not collected | After intraventricular irrigation | Before intraventricular irrigation | After tumor biopsy | Before tumor biopsy |
Specimen - 2241613 | 3321248v1 | Will/has a liquid-based cytology (LBC) specimen be(en) collected 7 days or more after the diagnosis of AGC? | Specimen Cervical Collection Ind-2 | A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._Relating to a neck, or cervix, in any sense._The act of gathering things together; having been brought together in one place._the yes/no question related to specimen characteristics. | No | Yes |
Specimen - 2241613 | 2773214v1 | Specimen Change Date java.util.Date | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of alteration or modification; changed or altered in form or character.:The particular day, month and year an event has happened or will happen._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. | ||
Specimen - 2241613 | 2919624v1 | Specimen Class Specimen Class Text Type | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Class; a collection of things sharing a common attribute._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Class; a collection of things sharing a common attribute._Text; the words of something written._Type; a subdivision of a particular kind of thing. | Fluid | Cell | Molecular | Tissue | |
Specimen - 2241613 | 2897125v1 | Planned Time of Collection | Specimen Collected Expected Time | the planned or expected collection time of a specimen or sample. | |
Specimen - 2241613 | 2913986v1 | Visit date | Specimen Collected Last Occurrence Date | the date during which a specimen was last collected. | |
Specimen - 2241613 | 2529078v1 | Specimen Collection Method java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of gathering something together.:The mode or manner or orderly sequence of events of a process or procedure. (from STED98)_Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2683524v1 | Specify Time Point(s) | Specimen Collection Period Frequency | The time period in which a bit of tissue, blood or urine that is taken or used for research purposes was gathered. | 24.0 hours | 20.0 hours | 16.0 hours | 12.0 hours | 8.0 hours | 6.0 hours | 4.0 hours | 3.0 hours | 2.5 hours | 2.0 hours | 1.5 hours | 1.0 hours | 0.75 hours | 0.5 hours | 0.25 hours | 4-8 hours | 0-2 hours | Prior to agent administration | 8-24 hours | 2-4 hours |
Specimen - 2241613 | 2004542v3 | Specimen type | Specimen Collection Period Interval | a protocol-specific period or interval when a specimen is collected for banking or analysis. | Baseline Specimen | 6-month Specimen |
Specimen - 2241613 | 64333v4 | Other specify | Specimen Collection Period Specify | the free-text field to describe some other timeframe of specimen collection. | |
Specimen - 2241613 | 2003953v3 | Timing of material collection | Specimen Collection Period Type | the time/treatment period in which a specimen was collected. | Cycle 1, Day 28 | Post-Treatment | Week 24 | Week 25 | Day 30 | Day 15 +/- 2 | Cycle 3, Day 1 | Post-Surgery | Prior to initiation of protocol therapy | Prior to radical prostatectomy | Baseline/pretreatment | Discontinuation of protocol treatment | Stem cell harvest | Pre-Study | Pre-Transplant remission prior to consolidation | Pre-Transplant, post-consolidation chemotherapy | Day 2 | After 1st chemo regimen | After 2nd chemo regimen | Day 50/57 | Day 85 | Day 176 | Day 260 | Day 29 | Prior to Nephrectomy | Nephrectomy | Cycle 1, Day 1 | Day 169 | Day 253 | Time of disease progression/end of study | Cycle 2, day 1 | Cycle 4, day 1 | First relapse | First complete remission | Hour 6 | Hour 8 | Hour 1 | Hour 2 | Hour 3 | Hour 4 | Hour 5 | An additional time point | A regularly scheduled time point | In systemic therapy arm follow-up OFF systemic therapy | In systemic therapy arm follow-up on systemic therapy | During post-operative follow-up OFF systemic therapy | During post-operative follow-up on systemic therapy | Six weeks after completion of operation | Immediately after completion of operation | Hour 7 | Day 42 | Day 38 | Day 35 | Day 32 | Hour 24 | Pre-Baseline | Other | Surgery | Week 8 | 72-96 hour specimen | 48-72 hour specimen | 24-48 hour specimen | Baseline | Week 13 | Progression | 1 mo. Post-transplant | 6 mos. Post-transplant | 12 mos. Post-transplant | Week 12 | Relapse | Recurrence | 3-6 hours | 1-3 hours | 0.5-1 hours | Day 1 treatment cycle 2 | Day 1 treatment cycle 1 | Core 3 | Core 7 | Core 6 | Core 5 | Core 4 | Visit 1 | Visit 2 | Visit 3 | Core 2 | Biopsy | Upon development of MDS | End of treatment | Initial diagnosis | Day 8 | Day 15 | Day 22 | Prostatectomy | Week 4 | At restaging | At time of cetuximab-infusion reactions | End of protocol therapy | Month 3 | Month 6 | Day 8 +/- 2 | Pre-Surgery | Pre-Treatment | Month 15 |
Specimen - 2241613 | 2783931v1 | Specimen Collection Status SpecimenCollectionStatus | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of gathering things together; having been brought together in one place.:A condition or state at a particular time._Status of collection of specimen | pending | notCollected | overdue | collected | |
Specimen - 2241613 | 2423037v1 | Specimen Comment java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A written explanation or criticism or illustration that is added to a book or other textual material._Value Domain for java language String datatype. | ||
Specimen - 2241613 | 2191156v1 | Unsatisfactory, specify | Specimen Condition Received Specify | the free-text field to specify the condition in which a specimen was received. | |
Specimen - 2241613 | 2555522v1 | Specimen Condition java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A state of being, such as a state of health or physical being._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2185894v1 | Biopsy proven? | Specimen Confirmation Biopsy Ind-2 | the yes/no indicator whether a confirmed biopsy specimen was taken. | No | Yes |
Specimen - 2241613 | 2940265v1 | Will patient rebiopsy at the 4 week visit | Specimen Confirmation Biopsy Indicator | the indicator relating to whether the patient will have a repeat biopsy. | Unknown | N/A | Yes | No | Continuing | Not Applicable |
Specimen - 2241613 | 2423041v1 | Specimen Created By java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Indicates the person or authoritative body who brought the item into existence._Value Domain for java language String datatype. | ||
Specimen - 2241613 | 2612992v1 | Specimen Created Date java.util.Date | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Brought into existence.:The particular day, month and year an event will happen or has happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. | ||
Specimen - 2241613 | 3623740v1 | Date Specimen was Decanted and Centrifuged | Specimen Decanted And Centifuged Date | The date on which the specimen was decanted and centrifuged. | |
Specimen - 2241613 | 2423036v1 | Specimen Description java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A statement or an account describing something._Value Domain for java language String datatype. | ||
Specimen - 2241613 | 2773215v1 | Specimen Display Name java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Exhibit, present, or demonstrate for viewing.:The words or language units by which a thing is known._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 3005039v1 | Elapsed time from surgical clamp of blood supply to fixation | Specimen Elapsed Time Surgical Procedure Clamping Fixative Duration | the elapsed time from the surgical clamp of blood supply to fixation of tissues or cells for microscopic study. | |
Specimen - 2241613 | 3005041v1 | Was the fixation performed within 20 minutes of the surgical clamp of blood supply | Specimen Elapsed Time Surgical Procedure Clamping Fixative Ind-3 | the yes/no/unknown indicator that asks whether the fixation was performed within a specified amount of time after the surgical clamp of blood supply. | No | Yes | Unknown |
Specimen - 2241613 | 2897700v1 | % Eosinophils | Specimen Eosinophilia Percentage Value | Numeric value to represent the percentage of infiltration by eosinophils in a tumor sample or specimen. | |
Specimen - 2241613 | 2859527v1 | Is the accession number (including block number) of the block used to determine the ER/PgR result available | Specimen Estrogen Receptor Progesterone Receptor Block Accession Number Present Ind-2 | the yes/no indicator whether the control number and unique section identifier were present for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination and used to determine estrogen receptor (widely expressed human Estrogen Receptors (NR3 Family) are cytoplasmic hormone-activated receptors that act as nuclear transcription factors composed of an N-terminal transcription activation/modulation domain, a DNA-binding domain, and a C-terminal steroid-binding domain) and progesterone receptor (specific proteins found in or on cells of progesterone target tissues that specifically combine with progesterone. The cytosol progesterone-receptor complex then associates with the nucleic acids to initiate protein synthesis) status. | No | Yes |
Specimen - 2241613 | 2711768v1 | Specimen Experiment Identifier java.lang.Long | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._In the scientific method, an experiment is a set of actions and observations, performed to verify or falsify a hypothesis or research a causal relationship between phenomena. The experiment is a cornerstone of the empirical approach to knowledge. (from Wikipedia):One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). | ||
Specimen - 2241613 | 2519442v1 | Specimen Expiration Date and Time java.util.Date | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._To come to a close or end of useable period; termination.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. | ||
Specimen - 2241613 | 2727168v1 | Specimen External Identifier java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Happening or arising or located outside or beyond some limits, or especially, some surface.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2513677v1 | Specimen First Dimension Position java.lang.Integer | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Preceding all others in time or space or degree.:The magnitude of something in a particular direction, especially length or width or height.:The particular portion of space occupied by a physical object._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement). | ||
Specimen - 2241613 | 3101109v1 | Specimen Flag Availability java.lang.Boolean | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An indicator that can be set or unset in order to signal whether a particular condition is true.:The quality of being obtainable or accessible and ready for use or service._Generic value domain for a primitive java datatype that is a Boolean value (true or false). | ||
Specimen - 2241613 | 2859515v1 | Is the accession number (including block number) of the block used to determine the FISH HER2 result available | Specimen Fluorescence in situ Hybridization HER2/neu Block Accession Number Present Ind-2 | the yes/no indicator whether the control number and unique section identifier are present for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination and used for fluorescence in situ hybridization (a physical mapping approach that uses fluorescent tags to detect hybridization of probes within metaphase chromosomes or less condensed somatic interphase chromatin) and HER2 (the ERBB2 Gene at 17q21.1 encodes ERRB2 Receptor Protein Tyrosine Kinase, a 185 kD type I membrane glycoprotein that controls cell growth with features similar to EGFR. Ligand binding increases phosphorylation of tyrosine residues) testing. | No | Yes |
Specimen - 2241613 | 2001485v5 | Specify reason | Specimen Form Not Submitted Reason | the free-text field to specify the reason a bit of tissue or blood or urine that is taken or used for research purposes was not submitted with a printed or electronic document with spaces to be filled out. | |
Specimen - 2241613 | 2001484v4 | Does specimen accompany this form? | Specimen Form Submitted Ind-2 | the yes/no indicator whether a bit of tissue or blood or urine that is taken or used for research purposes being submitted with a printed or electronic document with spaces to be filled out. | No | Yes |
Specimen - 2241613 | 3110935v1 | Test | Specimen GI or Urology Test Type | Text classification for a type of gastrointestinal (GI) or urologic laboratory procedure performed on a biospecimen. | Tissue Pharmacogenetics | Blood Pharmacogenetics | Blood Panitumumab antibody | Blood AMG 479 antibody | Blood biomarker | Urine biomarker | Pharmacodynamics (Acetylation) | Insoluble Biomarker | Soluble Biomarker |
Specimen - 2241613 | 2399445v1 | Sample type | Specimen Genome Analysis Type | the type of specimen to be used in a genomic analysis. | Whole blood | Buccal cells |
Specimen - 2241613 | 2469365v1 | Date Surgical Gleason Score Obtained | Specimen Gleason Score Date | the date on which a sample of prostate gland tissue was collected to identify any cells very different from normal cells (pattern 4 or 5) according to the standard Gleason grading system. | |
Specimen - 2241613 | 2469423v1 | Any tertiary elements of Gleason 4 or 5 pattern? | Specimen Gleason Score Indicator | a yes/no indicator to ask if cells very different from normal cells (pattern 4 or 5) were identified in a sample of prostate gland tissue examined using the standard Gleason grading system. | No | Unknown | Yes | Not available |
Specimen - 2241613 | 2474079v1 | Percent (%) | Specimen Gleason Score Percentage Value | a value by percentage estimating the portion of cells in a sample which are different from normal cells as identified in prostate gland tissue examined using the standard Gleason grading system. | |
Specimen - 2241613 | 65040v3 | Millimeters of Gleason Pattern 4-5 | Specimen Gleason Score Positive Measurement | for prostate cancer, a measurement in millimeters of the amount of biopsy tissue containing cancer cells with Gleason Pattern 4 to 5. | |
Specimen - 2241613 | 2897705v1 | % Granulocytes | Specimen Granulocyte Infiltration Percentage Value | Numeric value to represent the percentage of infiltration by granulocytes in a tumor sample or specimen. | |
Specimen - 2241613 | 65062v3 | Prostate intraepithelial neoplasia (PIN), High Grade | Specimen High Grade Prostatic Intraepithelial Neoplasia Ind-3 | a yes/no indicator to ask if pathologic exam of the prostate gland showed changes in epithelium regarded as precursors of cancer, including moderate dysplasia and proliferation of secretory cells. | No | Yes | Unknown |
Specimen - 2241613 | 2547718v1 | HGPIN | Specimen High Grade Prostatic Intraepithelial Neoplasia Indicator | A present/absent indicator to ask if pathologic exam of the biopsy showed changes in epithelium regarded as precursors of cancer. | Present | Absent |
Specimen - 2241613 | 2532010v1 | HGPIN % | Specimen High Grade Prostatic Intraepithelial Neoplasia Percentage Number | The percentage with high grade prostatic intraepithelial neoplasia (HGPIN). | |
Specimen - 2241613 | 2555520v1 | Specimen Identifier java.lang.Integer | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement). | ||
Specimen - 2241613 | 2423034v1 | Specimen ID (Identifier) | Specimen Identifier java.lang.Long | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Value Domain for java language Long datatype. | |
Specimen - 2241613 | 2423035v1 | Specimen Identifier java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Value Domain for java language String datatype. | ||
Specimen - 2241613 | 2969453v1 | Inflammatory Change | Specimen Inflammation Change Category | Classification of tissue based on the amount of inflammatory changes present in a specimen. | Moderate | Absent | Mild | Severe |
Specimen - 2241613 | 2897695v1 | % Inflammation | Specimen Inflammation Change Percentage Value | Numeric value to represent local response to cellular injury, marked by capillary dilatation, edema and leukocyte infiltration; clinically, inflammation is manifest by reddness, heat, pain, swelling and loss of function, with the need to heal damaged tissue. | |
Specimen - 2241613 | 64315v3 | Inflammatory Change | Specimen Inflammation Change Type | a qualitative estimate by percent indicating changes in a tissue specimen due to inflammation. | 10-75% inflammatory cells | <10% inflammatory cells | >75% inflammatory cells |
Specimen - 2241613 | 2555524v1 | Specimen Investigator Comment java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An individual who conducts scientific research. In a clinical setting this individual actually conducts or/and supervises the clinical investigation and study-related procedures; monitors the safety of the trial subjects and investigational staff (i.e., under whose immediate direction an agent is administered or dispensed to a subject), collects and analyses data and study documents, and provides reports in compliance with applicable requirements.:A written explanation or criticism or illustration that is added to a book or other textual material._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2711767v1 | Specimen Investigator java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An individual who conducts scientific research. In a clinical setting this individual actually conducts or/and supervises the clinical investigation and study-related procedures; monitors the safety of the trial subjects and investigational staff (i.e., under whose immediate direction an agent is administered or dispensed to a subject), collects and analyses data and study documents, and provides reports in compliance with applicable requirements._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2008251v1 | Date Sent | Specimen Lab Submission Date | Date the specimen is submitted to the lab. | |
Specimen - 2241613 | 834v3 | Date specimen submitted | Specimen Lab Submitted Date | the date the specimen is submitted to the lab. | |
Specimen - 2241613 | 2483596v1 | Specimen Label | Specimen Label Text | A free text field to capture the specimen label information. | |
Specimen - 2241613 | 2423042v1 | Specimen Label java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A brief description given for purposes of identification; an identifying or descriptive marker that is attached to an object._Value Domain for java language String datatype. | ||
Specimen - 2241613 | 3192531v1 | Time Specimen Received by Laboratory | Specimen Laboratory Arrival Time | Clock time for the arrival of a biospecimen in a laboratory for processing/testing. | |
Specimen - 2241613 | 2555523v1 | Specimen Laboratory Comment java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A workplace for the conduct of scientific research.:A written explanation or criticism or illustration that is added to a book or other textual material._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 62647v3 | Date of Collection of Sample for Analysis | Specimen Laboratory Procedure Collection Date | the date a biological sample (i.e., blood, urine, marrow, tumor, CSF) was collected from the patient for laboratory analysis. | |
Specimen - 2241613 | 2664762v1 | Sample test date | Specimen Laboratory Procedure Date | the date of the medical procedure that involves testing a sample of blood, urine, or other substance from the body. | |
Specimen - 2241613 | 2405396v1 | Time specimen shipped | Specimen Laboratory Procedure Submission Time | the time the specimen is submitted to the lab. | |
Specimen - 2241613 | 64195v3 | Date of Receipt of Specimens | Specimen Laboratory Received Date | the date specimens were received by a laboratory or banking institution. | |
Specimen - 2241613 | 2003949v3 | Shipped to | Specimen Laboratory Received Location Name | the name of the lab that was sent/received the specimen. | ECOG Pathology Coordinating Office | Atkins Lab | Wood Lab | Mayo Central Laboratory for Clinical Trials | Immunologic Monitoring and Cellular Products Lab | Fox Chase Cancer Center | H. Lee Moffitt Cancer Center | Leukemia Immunophenotyping Reference Library | ECOG Cytogenetics Laboratory | Other Central Laboratory | George Sledge | Myeloma Tumor Biology Laboratory | ECOG Leukemia Translational Studies Laboratory |
Specimen - 2241613 | 3376368v1 | Ship to | Specimen Laboratory Received Location Text | information related to the lab that received the bit of tissue or blood or urine._The textual identifier of an organization that is conducting a trial, a central laboratory delivering the data or a laboratory performing a lab test. | |
Specimen - 2241613 | 2008255v1 | Name of lab specimen sent to | Specimen Laboratory Received Name | the name of the laboratory or banking institution that received the patient's specimen. | |
Specimen - 2241613 | 2898846v1 | Specimen Life Sciences Identifier Entity Identifier java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:An independently existing thing (living or nonliving).:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2898845v1 | Specimen Life Sciences Identifier Namespace java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:In general, a namespace is an abstract container, which is or could be filled by names, or technical terms, or words, and these represent or stand for real-world things. A description logic terminology namespace is a collection of Kind, Role, Property and Concept definitions. As in computer programming, context namespaces are intended to allow multiple knowledge bases to reside in the same physical database. (from Apelon)_Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2898844v1 | Specimen Life Sciences Identifier Organizational Unit java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:Organizational unit like a laboratory, institute or consortium._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2553321v1 | Specimen Lineage Text Type | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Descent in a line from a common progenitor or source._Text; the words of something written._Type; a subdivision of a particular kind of thing. | Derived | Aliquot | New | |
Specimen - 2241613 | 2897710v1 | % Lymphocytes | Specimen Lymphocyte Infiltration Percentage Value | Numeric value to represent the percentage of infiltration by lymphocytes in a solid tissue normal sample or specimen. | |
Specimen - 2241613 | 2897716v1 | % Macrophages | Specimen Macrophage Infiltration Percentage Value | Numeric value to represent the percentage of infiltration by monocytes in a solid tissue normal sample or specimen. | |
Specimen - 2241613 | 2883940v1 | Block/Slides Type | Specimen Malignant Neoplasm Submission Gastrointestinal Type | the type of gastrointestinal tumor specimen submitted. | 20-30 unstained slides | 2mm core biopsy | One representative block |
Specimen - 2241613 | 2764923v1 | Was research tumor submitted | Specimen Malignant Neoplasm Submission Ind-2 | the yes/no indicator whether the malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues, was submitted for research purposes. | No | Yes |
Specimen - 2241613 | 2529079v1 | Specimen Material Type java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The tangible substance that goes into the makeup of a physical object.:Something distinguishable as an identifiable class based on common qualities._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2008274v2 | Medial-lateral specimen dimension (cm) | Specimen Measurement X Medial Lateral Centimeter Measurement | Numeric value to represent the medial-lateral size of a specimen. | |
Specimen - 2241613 | 2773217v1 | Specimen Modified By java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Indicates the person or authoritative body who changed an item._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2475627v1 | Specimen NCI Metathesaurus Code Set java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A concept unique identifier within the NCI Enterprise Vocabulary Service's NCI Metathesaurus.:A group of things of the same kind that belong together and are so used._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2519439v1 | Specimen name | Specimen Name java.lang.String | The name or label that is assigned to the specimen to identify it; for example, Part A or Block 31c. | |
Specimen - 2241613 | 2679827v1 | NSABP Specimen ID for Central Testing | Specimen National Surgical Adjuvant Breast and Bowel Project Central Laboratory Identifier Number | the unique identifier for a specimen, a bit of tissue or blood or urine that is taken or used for research purposes, assigned by the National Surgical Adjuvant Breast and Bowel Project (NSABP), a clinical trials cooperative group supported by the NCI, central laboratory, a laboratory delivering the data for a particular study. | |
Specimen - 2241613 | 2897730v1 | % Neutrophils | Specimen Neutrophil Infiltration Percentage Value | Numeric value to represent the percentage of infiltration by neutrophils in a solid tissue normal sample or specimen. | |
Specimen - 2241613 | 2739418v1 | If not collected, specify reason | Specimen Not Collected Reason | the reason a tissue specimen taken for research or analysis was not collected. | Institutional error | Patient refusal | Administrative error | Selection error | Other |
Specimen - 2241613 | 2547633v1 | Reason Specimens Not Collected | Specimen Not Collected Reason Text | A free text field used to describe the reason a specimen was not collected. | |
Specimen - 2241613 | 2739424v1 | Other, specify | Specimen Not Collected Specify | the free-text field to specify the reason a tissue specimen taken for research or analysis was not collected. | |
Specimen - 2241613 | 2416947v1 | No specimen received | Specimen Not Received Text | the check box to indicator if a specimen was not received. | |
Specimen - 2241613 | 3022256v1 | Was sample obtained | Specimen Obtain Ind-2 | the yes/no indicator related to a part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis being obtained. | No | Yes |
Specimen - 2241613 | 2241638v1 | Specimen obtained at | Specimen Obtained Period Type | the period that a specimen was obtained or collected. | Definitive surgery | Baseline | Other | Interim/Surgery |
Specimen - 2241613 | 2830295v1 | Specimen Original Quantity java.lang.Double | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Preceding all others in time or being as first made or performed.:How much there is of something that you can measure; the total amount or number._Generic value domain for a primitive java datatype that is a Double-precision floating point number (64-bit IEEE 7540). | ||
Specimen - 2241613 | 2856606v1 | Specify number | Specimen Other Submission Count | the quantity as related to other specimen being submitted. | |
Specimen - 2241613 | 2856608v1 | Other, specify | Specimen Other Submission Specify | the free-text field to specify the type of other specimen being submitted. | |
Specimen - 2241613 | 2475624v1 | Specimen Parent Identifier java.lang.Long | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A mother or a father; an immediate progenitor.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). | ||
Specimen - 2241613 | 2771361v1 | Specimen Part Life Sciences Identifier Entity Identifier java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:An independently existing thing (living or nonliving).:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2771360v1 | Specimen Part Life Sciences Identifier Namespace java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:In general, a namespace is an abstract container, which is or could be filled by names, or technical terms, or words, and these represent or stand for real-world things. A description logic terminology namespace is a collection of Kind, Role, Property and Concept definitions. As in computer programming, context namespaces are intended to allow multiple knowledge bases to reside in the same physical database. (from Apelon)_Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2771359v1 | Specimen Part Life Sciences Identifier Organizational Unit java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:Organizational unit like a laboratory, institute or consortium._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2475626v1 | Specimen Part Sequence Number java.lang.Integer | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A serial arrangement in which things follow in logical order or a recurrent pattern.:A numeral or string of numerals expressing value, quantity, or identification._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement). | ||
Specimen - 2241613 | 2553322v1 | Specimen Pathology Finding Status Specimen Histopathological Text Type | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The medical science, and specialty practice, concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes. Informally used to mean the result of such an examination.:The result of an examination or inquiry.:A condition or state at a particular time._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A branch of pathology concerned with the tissue changes characteristic of disease._Text; the words of something written._Type; a subdivision of a particular kind of thing. | Not Specified | Non-Malignant | Malignant, Invasive | Malignant, Pre-Invasive | Non-Malignant, Diseased | Pre-Malignant | Malignant | Metastatic | |
Specimen - 2241613 | 2475625v1 | Specimen Pathology Report Identifier java.lang.Long | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A report that provides a description of the gross and microscopic examination of the specimen and is used to make a diagnosis and to determine treatment. It defines which structures and organs of the body are involved by the tumor, verifies the primary site of the cancer and describes the extent to which it has spread.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). | ||
Specimen - 2241613 | 2897683v1 | % Tumor Edge | Specimen Perimeter Tumor Percentage Value | Numeric value to represent the percentage of the perimeter of a specimen/sample that is tumor. | |
Specimen - 2241613 | 2711766v1 | Specimen Pharmacologic Substance Name java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An active natural, synthetic or semi-synthetic ingredient including endogenous body substance that is intended to furnish pharmacological activity or other direct effect in the diagnosis, cure, mitigation, treatment, or prevention of disease or to affect the structure or any function of the human body, but does not include intermediates used in the synthesis of such ingredient (21 CFR 314.3(b)).:The words or language units by which a thing is known._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2915879v1 | Date PK Performed | Specimen Plasma Pharmacokinetic Study Collected Date | the date a pharmacokinetic analysis was performed. | |
Specimen - 2241613 | 2389515v1 | Pharmacokinetics plasma sample | Specimen Plasma Pharmacokinetic Study Collected Type | the type or amount of plasma, the noncellular portion of the circulating blood, collected for examination or diagnosis using the process by which a drug is absorbed, distributed, metabolized, and eliminated. | 10 cc sample for estradiol | 15 cc sample |
Specimen - 2241613 | 64768v3 | Specimen State at Time of Measurement | Specimen Preparation Method Text | a text field to describe the process to make a sample of tissue or blood ready for (transport or) use for research (esp. relevant for tissue changes due to freezing and fixatives). | |
Specimen - 2241613 | 2842569v1 | Representative primary tumor from lymph node | Specimen Primary Malignant Neoplasm Lymph Node Submission Type | the type of submission of a tissue specimen taken from the lymph node, a rounded mass of lymphatic tissue that is surrounded by a capsule of connective tissue, containing a sample of the primary malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues. | Paraffin block | Unstained slide |
Specimen - 2241613 | 2842562v1 | Representative primary tumor from prostate | Specimen Primary Malignant Neoplasm Prostate Gland Submission Type | the type of submission of a tissue specimen taken from the prostate, walnut shaped accessory sex gland of the male reproductive system that secretes a fluid which is part of the semen, containing a sample of the primary malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues. | Paraffin block | Unstained slide |
Specimen - 2241613 | 2842566v1 | Representative primary tumor from seminal vesicle | Specimen Primary Malignant Neoplasm Seminal Vesicle Submission Type | the type of submission of a tissue specimen taken from the seminal vesicle, one of the two paired glands in the male genitourinary system, posterior to the bladder and superior to the prostate gland, that produces fructose-rich seminal fluid which is a component of semen, containing a sample of the primary malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues. | Paraffin block | Unstained slide |
Specimen - 2241613 | 2773218v1 | Specimen Received Date and Time java.util.Date | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._To have taken, accepted, or gotten something offered.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. | ||
Specimen - 2241613 | 2501670v1 | Date Specimen Received From Pathology | Specimen Received From Pathology Date | The date on which a bit of tissue or blood or urine that is taken or used for research purposes and acquired from pathology which concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes. | |
Specimen - 2241613 | 2519440v1 | Specimen Registration Date and Time java.util.Date | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of enrolling; an entry in a register.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. | ||
Specimen - 2241613 | 2670924v1 | Did patient consent to DNA specimen use in future research studies? | Specimen Related Genetic Future Research Consent Ind-2 | the yes/no indicator that asks whether the patient"s initial consent was given for use of a specimen use for future genetic research. | No | Yes |
Specimen - 2241613 | 2647130v1 | Date of consent [for] pharmacogenetic research | Specimen Related Genetic Research Consent Date | the date relating to consent and related genetic research using a specimen. | |
Specimen - 2241613 | 2556199v1 | Patient's initial consent given for specimen use for genetic research relating to the study treatment | Specimen Related Genetic Research Consent Ind-2 | the yes/no indicator relating to consent and the related genetic research using a specimen. | No | Yes |
Specimen - 2241613 | 2003973v3 | Is extra material stored? | Specimen Remaining Storage Ind-3 | the yes/no/unknown indicator whether there was storage of the remaining preparation of tissue or bodily fluid taken for examination or diagnosis. | No | Yes | Unknown |
Specimen - 2241613 | 2003974v3 | Extra material type | Specimen Remaining Storage Name | the name of the additional or extra material (specimen) collected or stored. | |
Specimen - 2241613 | 2519441v1 | Specimen Removed Date and Time java.util.Date | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Taken out of, separated from, or eliminated.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. | ||
Specimen - 2241613 | 2501665v1 | Date Specimen Requested From Pathology | Specimen Requested From Pathology Date | The date on which a bit of tissue or blood or urine that is taken or used for research purposes and requested from pathology which concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes. | |
Specimen - 2241613 | 3562987v1 | Mandatory or optional | Specimen Requirement Collection Status | the status related to whether a specimen collection is considered mandatory or optional per protocol. | Optional | Mandatory |
Specimen - 2241613 | 65086v3 | Grams Resected | Specimen Resection Weight Measurement | a numeric measure in grams for the weight of a sample of tissue or body fluid collected during an operative procedure. | |
Specimen - 2241613 | 2513678v1 | Specimen Second Dimension Position java.lang.Integer | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Coming next after the first in position in space or time or degree or magnitude.:The magnitude of something in a particular direction, especially length or width or height.:The particular portion of space occupied by a physical object._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement). | ||
Specimen - 2241613 | 2503758v1 | Date Specimen Shipped To CCMO | Specimen Shipped To Constortia Contract Management Office Date | The date on which the specimen was shipped to the consortia contract management office (CCMO). | |
Specimen - 2241613 | 2006898v1.1 | Courier Tracking Number | Specimen Shipping Company Identifier Number | the identifier number for the specimen used by the courier. | |
Specimen - 2241613 | 2190839v1 | Quantity of items shipped | Specimen Shipping Number | the number of specimens shipped. | |
Specimen - 2241613 | 3334700v1 | Quantity Items Received | Specimen Shipping Receive Number | A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._The act or business of transporting goods._To take, accept, or got something offered._Number | |
Specimen - 2241613 | 2190555v1 | Other, specify | Specimen Shipping Specify | the specified specimen shipping type. | |
Specimen - 2241613 | 2190553v1.1 | Items shipped | Specimen Shipping Specimen Shipping Type | information related to The act or business of transporting a tissue specimen._the type of shipment method for a specimen. | Scrolls | Cores | OCT | Slides | Snap Frozen | Block | Other |
Specimen - 2241613 | 2548346v1 | Total number of specimen slices | Specimen Slice Count | Value to identify the number of 1 cm slices made from a specimen. | |
Specimen - 2241613 | 2548354v1 | Specimen slice | Specimen Slice Dimensionality Name | Text term to represent the dimensionality by which a specimen slice can be identified. | Medial most specimen slice | Lateral most specimen slice | Inferior most specimen slice | Superior most specimen slice | Anterior most specimen slice | Posterior most specimen slice |
Specimen - 2241613 | 2548350v1 | How was specimen sliced? | Specimen Slice Dimensionality Type | Types of specimens based on slice dimensionality. | med/lat | sup/inf | ant/post |
Specimen - 2241613 | 2548356v1 | Slice # | Specimen Slice Identifier | Unique identifier for a specimen slice referenced by the dimensional cutting pattern. | |
Specimen - 2241613 | 2711769v1 | Specimen Specimen Date java.util.Date | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.:The particular day, month and year an event has happened or will happen._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. | ||
Specimen - 2241613 | 2608232v1 | Specimen Specimen Identifier java.lang.Long | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). | ||
Specimen - 2241613 | 2529080v1 | Specimen Specimen Identifier java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2608233v1 | Specimen Specimen Type Code java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.:Something distinguishable as an identifiable class based on common qualities.:A system, often of numbered categories, for representation of data._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2178270v1 | Preservative used | Specimen Sputum Preservative Code | Type of preservative used for sputum specimens. | 9 | 7 | 1 | 2 | 3 |
Specimen - 2241613 | 2178198v1 | Preservative used, specify | Specimen Sputum Preservative Other Text | Type of preservative used for sputum specimens that does not appear in the pick-list. | |
Specimen - 2241613 | 2773219v1 | Specimen Status java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A condition or state at a particular time._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 3664659v1 | Specimen Type | Specimen Sun Exposure Type | The value that describes the skin specimen type. | Non-sun-exposed skin | Sun-protected skin | Sun-exposed skin |
Specimen - 2241613 | 2008275v2 | Superio-inferior specimen dimension (cm) | Specimen Superior Inferior Centimeter Measurement | Numeric value to represent the superior-inferior measurement of a specimen, a bit of tissue or blood or urine that is taken or used for research purposes. | |
Specimen - 2241613 | 2188954v1 | Method of extraction | Specimen Surgical Procedure Technique | information about the method of extraction of a tissue specimen. | Mastectomy | Axillary dissection | Re-excision | General surgery, NOS | Sentinel node dissection | Lumpectomy | Biopsy |
Specimen - 2241613 | 2178259v1 | Tissue laterality: | Specimen Tissue Laterality Code | Side of the body tissue specimen was taken from. | 9 | 1 | 2 | 8 |
Specimen - 2241613 | 2842654v1 | Are TMA samples being submitted at prostatectomy | Specimen Tissue Microarray Prostatectomy Submission Ind-2 | the yes/no indicator whether there was submission of tissue microarrays, a device for use in high-throughput molecular analysis/screening of clinical tissue specimens that spatially arrange 500-1000 tumor biopsies or other tissue onto a microarray block, which is then sliced into sections for probing DNA, RNA or protein targets to provide coincident analysis of all specimens in the array, following prostatectomy, an operation to remove part or all of the prostate. | No | Yes |
Specimen - 2241613 | 2842658v1 | Sample type | Specimen Tissue Microarray Prostatectomy Submission Type | the type of specimen submitted for use on tissue microarrays, a device for use in high-throughput molecular analysis/screening of clinical tissue specimens that spatially arrange 500-1000 tumor biopsies or other tissue onto a microarray block, which is then sliced into sections for probing DNA, RNA or protein targets to provide coincident analysis of all specimens in the array, following prostatectomy, an operation to remove part or all of the prostate. | Cores | Parraffin block |
Specimen - 2241613 | 3005019v1 | Total Volume | Specimen Total Volume Amount Milliliter Number | Numeric value for the total amount of sample or specimen, measured in milliliters (mL). | |
Specimen - 2241613 | 2519443v1 | Specimen Tracer java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A substance that is identifiable by virtue of its radioactive signature, color, or other distinguishing physical property, such as a dye, radioactive isotope, or inert chemical, that is introduced into a biological or mechanical system and can be followed_Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 3623470v1 | Date Specimen Transferred | Specimen Transfer Date | The date the specimen was moved from one location to another. | |
Specimen - 2241613 | 3649977v1 | Was the specimen transferred? | Specimen Transfer Yes No Indicator | The response to a question that asks if a specimen was transferred. | No | Yes |
Specimen - 2241613 | 2248183v1 | Shipment type | Specimen Transport Description Type | the type of shipment method used in the transport of specimens. | Dry ice | Wetpack | Cold pack |
Specimen - 2241613 | 2648061v1 | Was a research Snap Frozen specimen obtained | Specimen Transport Frozen Laboratory Ind-2 | a yes/no question relating to frozen specimen transport to a lab. | No | Yes |
Specimen - 2241613 | 2405485v1 | Specify reason | Specimen Transport Frozen Laboratory Reason | the reason a sample was shipped using dry ice. | Sample shipped with other samples | Sample shipped after being stored | Buccal sample | Other |
Specimen - 2241613 | 2405488v1 | Other, specify | Specimen Transport Frozen Laboratory Specify | the free text field to specify the other reason a sample was shipped using dry ice. | |
Specimen - 2241613 | 2897693v1 | % Central Core | Specimen Tumor Core Percentage Value | Numeric value to represent the percentage of epicenter of the tumor in a specimen. | |
Specimen - 2241613 | 2791170v1 | Specimen Type | Specimen Type | The type of specimen taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis. | Normal mucosa | ACF | Colon Tissue | Whole Blood |
Specimen - 2241613 | 3111302v1 | Sample Type | Specimen Type Collection Biospecimen Type | Text term to describe the source of a biospecimen used for a laboratory test. | Feces | Skin | Ascites | Other | Bone Marrow | CSF | Serum | Tumor | Buccal Mucosa | Urine | Pleural Fluid | Normal Tissue | Cell | Blood | Saliva | Plasma | PBMCs | None | Unspecified | Tissue |
Specimen - 2241613 | 2513675v1 | Specimen Type Collection Text Type | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A subdivision of a particular kind of thing._Text; the words of something written._Type; a subdivision of a particular kind of thing. | DNA | RNA | RNA, poly-A enriched | cDNA | Protein | Not Specified | Whole Blood | Whole Bone Marrow | Bone Marrow Plasma | Cerebrospinal Fluid | Lavage | Pericardial Fluid | Synovial Fluid | Amniotic Fluid | Sweat | Milk | Gastric Fluid | Bile | Feces | Fresh Tissue | Frozen Tissue Slide | Fixed Tissue | Fixed Tissue Slide | Cryopreserved Cells | Body Cavity Fluid | Vitreous Fluid | RNA, cytoplasmic | RNA, nuclear | Fixed Tissue Block | Frozen Tissue | Frozen Tissue Block | Fixed Cell Block | Frozen Cell Block | Frozen Cell Pellet | Microsessected | Serum | Sputum | Urine | Plasma | Slide | Saliva | |
Specimen - 2241613 | 2715527v1 | Specimen Unique Identifier HL7.InstanceIdentifier | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A set of characters used as a code that is unique in the context or the system for which it is created. It serves as a means of identification and reference (often instead of a name) for an entity, person, thing, function, procedure, activity, variable, or a body of data._Generic value domain for HL7 instance identifiers that uniquely identify a thing or object. | ||
Specimen - 2241613 | 2731351v1 | Specimen Unique Identifier java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A set of characters used as a code that is unique in the context or the system for which it is created. It serves as a means of identification and reference (often instead of a name) for an entity, person, thing, function, procedure, activity, variable, or a body of data._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2608235v1 | Specimen Unit of Volume java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._An indication of the type of unit of measure being used to express a volume._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2475623v1 | Specimen Universally Unique Identifier java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A 128 bit identifier. Depending on the mechanism used to generate it, it is either guaranteed to be different from all other UUIDs/GUIDs generated until 3400 AD or extremely likely to be different. Its relatively small size lends itself well to sorting, ordering, and hashing of all sorts, storing in databases, simple allocation, and ease of programming in general._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 3101110v1 | Specimen Use java.lang.String | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Use; put into service; make work or employ (something) for a particular purpose or for its inherent or natural purpose._Generic value domain for a java datatype that is a class that represents character strings. | ||
Specimen - 2241613 | 2475622v1 | Specimen Version java.lang.Long | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A form or variant of a type or original._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). | ||
Specimen - 2241613 | 2222486v1 | Approximate volume of sample | Specimen Vial Tissue Collection Received Average Volume Measurement | the volume, in milliliters, a vial or collection tube containing a bit of tissue or blood or urine being received and placed into a repository or tissue bank. | |
Specimen - 2241613 | 2006071v3 | Average Volume Per Tube | Specimen Vial Tissue Collection Submission Average Volume Measurement | the average volume, in milliliters, of a vial or collection tube containing a bit of tissue or blood or urine being submitted to a repository or tissue bank. | |
Specimen - 2241613 | 2006070v3 | Number of Tubes Banked | Specimen Vial Tissue Collection Submission Count | the numeric count of vials or collection tubes containing a bit of tissue or blood or urine being submitted or placed into a repository or tissue bank. | |
Specimen - 2241613 | 2423043v1 | Specimen Visible Flag java.lang.Boolean | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Perceptible especially by the eye; open to easy view.:An indicator that can be set or unset in order to signal whether a particular condition is true._Value Domain for java language Boolean datatype | ||
Specimen - 2241613 | 2608234v1 | Specimen Volume java.lang.Long | Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._The amount of three dimensional space occupied by an object or the capacity of a space or container._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). |