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Specimen Classes and Attributes

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Listed in CDEs Sequenced by UML Class

Tumor-specific entries are annotated with their associated tumor types.

ClassCDE Public IdCRF Question TextData ElementDefinitionValid Values (hover for Value Meaning)
Specimen - 21770262008429v1# of AliquotsAliquot NumberNumber of aliquots associated with a sample/specimen. 
Specimen - 21770263009159v1ProcedureBiospecimen Collection Procedure NameName of of the test or procedure used for biospecimen acquisition,Core Needle Biopsy | FNA | Other | Cytology | VATS Surgical Specimen | Mediastinoscopy | Surgical Biopsy | Bronchoscopy Biopsy
Specimen - 21770263103514v1Method of Tissue ProcurementBiospecimen Procurement Method TypeText term that describes the method of which tumor/cancer tissue is removed from a patient.Excisional Biopsy | Surgical Resection | Aspirate | Incisional Biopsy | Other | Endoscopic Biopsy | Other Method, specify | Laparoscopic Partial Nephrectomy | Open Partial Nephrectomy | Hand Assisted Laparoscopic Radical Nephrectomy | Laparoscopic Radical Nephrectomy | Open Radical Nephrectomy | Endo Rectal Tumor Resection | Pan-Procto Colectomy | Abdomino-perineal Resection of Rectum | Anterior Resection of Rectum | Total Colectomy | Sigmoid Colectomy | Transverse Colectomy | Right Hemicolectomy | Left Hemicolectomy | Tumor Resection | Open Craniotomy | Fine Needle Aspiration | Needle Biopsy | Indeterminant | Endoscopic Mucosal Resection (EMR)
Specimen - 21770263234083v1Research SampleCollection Research Biospecimen NameText identification of a biospecimen collected for an individual participating in a research setting. 
Specimen - 21770262195135v1Time of FreezingFreezing TimeThe freezing time of the participant's specimen or tissue. 
Specimen - 21770262220525v1Date Last Urine VoidLast Urine Void DateThe date of the last urine void sample. 
Specimen - 21770262220529v1Time Last Urine VoidLast Urine Void TimeThe time of the last urine void sample. 
Specimen - 21770263119691v1What is the nature of the submitted specimen?Pathologic Specimen Submitted SourceSource or pathologic origin of specimen tissue submitted.Normal Tissue | Regional Cutaneous or Subcutaneous Metastasis | Regional Lymph Node Metastasis | Distant Metastases, specify site | Primary Tumor
Specimen - 21770263371409v1(If yes) Were the therapeutic changes noted in:Preoperative Therapeutic Effect Anatomic SiteAnatomic site showing therapeutic effects of preoperative therapy through tissue sampling.Breast and nodes | Nodes only | Breast only
Specimen - 21770262414969v1Research collection tubes/amountsResearch Specimen Collected Tube TypeTypes of specimen tube(s) with specimen amounts collected for research purposes.8 cc blood 2nd tube | 8 to 10 cc ACD | 10 cc EDTA | 10 cc Wildcard tube | 100 cc urine | 8 cc blood
Specimen - 21770262187711v1Result of DrawSample Collection ResultFinal outcome of the activity of collecting a sample, in terms of success or not obtained.Sample Obtained Successfully | Sample Not Obtainable
Specimen - 21770262321283v1Sample Weight (gm)Sample Weight In Gram NumberNumeric value to represent the weight of a specimen or tissue sample in number of grams. 
Specimen - 217702664674v4Accession NumberSpecimen Accession Numberthe number assigned to the surgical pathology specimen to uniquely identify it. 
Specimen - 21770262230047v4Specimen Accession #Specimen Accession NumberThe alphanumeric identifier assigned to the specimen to uniquely identify it. 
Specimen - 21770262189033v1Number of aliquotsSpecimen Aliquot Numberinformation about the number of aliquots. 
Specimen - 21770262189021v1Average aliquot volumeSpecimen Aliquot Volume Average Valueinformation about the average aliquot volume. 
Specimen - 21770263544444v1Was specimen collected-Antiglycan antibodiesSpecimen Alpha-Gal Glycosphingolipid Antibodies Collected Yes No Indicatorthe yes/no indicator that asks whether a specimen was collected relating to antiglycan antibodies.No | Yes
Specimen - 21770263579604v1Were specimens collected for anti-glycan antibodies correlative biology studySpecimen Alpha-Gal Glycosphingolipids Antibody Correlative Study Collected Yes No Unknown Not Applicable Indicatorthe yes/no/unknown/not applicable indicator that asks whether a specimen was collected for a correlative study relating to antiglycan antibodies.No | Yes | Unknown | Not Applicable
Specimen - 21770262183030v1Specimen AmountSpecimen AmountThe number that describes the amount of specimen included in the sample. 
Specimen - 21770263369255v1Was the anal specimen collectedSpecimen Anus Collected Ind-2the yes/no question related to the sample collected from the patient for analysis or examination from the lower opening of the digestive tract, lying in the cleft between the buttocks, through which fecal matter is extruded.No | Yes
Specimen - 21770263369271v1Specify reasonSpecimen Anus Negation Collected Specifythe free-text field related to not having the sample collected from the patient for analysis or examination from the lower opening of the digestive tract, lying in the cleft between the buttocks, through which fecal matter is extruded. 
Specimen - 21770263226338v1SpecifySpecimen Biological Storage Other Specify TextThe free text field that describes under which condition the specimen was stored. 
Specimen - 21770262190866v1.1Storage typeSpecimen Biological Storage Specimen Biological Storage Typeinformation related to biological storage of a specimen._the type of storage for a biologic specimen.Refrigerator (4 degrees C) | Standard non-cycling freezer (-20 degrees C) | Ultra-cold Freezer (-80 degrees C) | Liquid Nitrogen (<-150 degrees C) | Other | Room temperature
Specimen - 21770263226336v1If the specimen WAS NOT shipped on the day of collection, under which conditions was the specimen stored?Specimen Biological Storage TypeThe name that describes the type of condition under which a specimen was stored.Not Applicable | Not stored per protocol, specify | Stored per protocol
Specimen - 21770262587076v1Site of biopsySpecimen Biopsy Anatomic Sitethe anatomic location of a biopsy of a pathologic specimen or tissue.Bone Marrow | Primary Neoplasm | Other | Lung | Liver | Skin | GI
Specimen - 21770262201978v1Biopsy SizeSpecimen Biopsy Size NumberThe size in millimeters of the biopsy specimen. 
Specimen - 21770263235995v1Specify biopsy site:Specimen Biopsy Specify Textinformation regarding a biopsy of a pathologic specimen or tissue._Be specific about something; define clearly._Text; the words of something written. 
Specimen - 21770262482150v1Was a biopsy specimen submitted?Specimen Biopsy Submitted IndicatorThe yes/no indicator that asks whether a biopsy specimen was submitted.YES | NO
Specimen - 21770262453354v2Stored at temperature specified in SOP?Specimen Biostorage Condition CategoryText term to represent the temperature conditions under which a biological specimen is stored.-100 to -130 Degrees Celsius | Vapor Phase Liquid Nitrogen | 4 Degrees Celsius | -20 Degrees Celsius | -80 Degrees Celsius | Room Temperature
Specimen - 21770262624022v1Block #Specimen Block IdentifierUnique identifier used to refer to a specific specimen block. 
Specimen - 217702664679v4BlocksSpecimen Block Numberthe block number of a specimen. 
Specimen - 21770262006887v1total number of cells countedSpecimen Cell Count Total Valuethe total number of cells counted. 
Specimen - 21770262190548v1Percent area tumor cellsSpecimen Cell Percentage ValueTotal area of a section represented by tumor cells, expressed as a percentage value. 
Specimen - 217702664336v3Other specifySpecimen Cell Source Specifythe free text field to describe the source of cells used for analysis for pathology. 
Specimen - 21770263233185v1Does the specimen consist of whole nuclei or sections of nuclei, eg. Sections of formalin-fixed, paraffin-embedded tissue?Specimen Characteristics Nucleus CategoryThe response to a question that asks if the nuclei specimen is either whole or sections.Sections of nuclei | Whole nuclei
Specimen - 217702664511v3% Coefficient of VariationSpecimen Coefficient of Variation Percentage Valuethe percentage value for the coefficient of variation. 
Specimen - 21770263203075v1City of Sample ProcurementSpecimen Collected Address City NameText to identify the name of a city in which the sample was procured. 
Specimen - 21770263203072v1State / Province / Country of Sample ProcurementSpecimen Collected Address Geographic Area NameText to identify the name of the state, province, or country in which the sample was procured. 
Specimen - 21770262227029v1Amount ObtainedSpecimen Collected Amount NumberNumber that describes the amount of specimen included in the sample. 
Specimen - 21770262261853v1Number of samples collected (total)Specimen Collected CountNumeric count of the total number of tissue samples/specimens collected. 
Specimen - 21770262202102v1Date CollectedSpecimen Collected DateThe date on which the specimen was collected. 
Specimen - 217702664191v4Date Obtained Date ObtainedSpecimen Collected Datethe date on which a specimen was collected. 
Specimen - 21770262716541v1Name of SampleSpecimen Collected Gynecologic NameNames to identify samples collected from a patient on a gynecologic study. [Manually-curated]Pre Cycle 6 frozen plasma Off treat prior to starting cycle 6 | Pre Cycle 6 frozen plasma Before starting cycle 6 | Pre Cycle 3 frozen plasma Off treat prior to starting cycle 3 | Pre Cycle 3 frozen plasma Before starting cycle 3 | Pre Cycle 1 frozen plasma | Pre Cycle 3 tumor biopsy Off treat prior to starting cycle 3 | Pre Cycle 3 tumor biopsy Before starting cycle 3 | Pre Cycle 1 tumor biopsy
Specimen - 21770262423688v1give reasonSpecimen Collected IBCSG Specifythe free text field to specify the status of a pathology specimen that was collected. 
Specimen - 21770262423687v1Is protocol-required pathology material availableSpecimen Collected IBCSG Statusthe status of a pathology specimen that was collected.Available now | Available within 3 months | Not available
Specimen - 21770262185981v1Must provide tissue and blood samplesSpecimen Collected Ind-2the yes/no indicator related to the sample collected from the patient for analysis or examination.No | Yes
Specimen - 21770263163341v1Collected?Specimen Collected IndicatorText term to signify whether a biospecimen was collected from an individual.Unknown | Yes | No
Specimen - 217702664340v3Other specifySpecimen Collected Method Specifythe free text field to describe some other type of procedure or method used to collect the specimen. 
Specimen - 217702664338v3How was the specimen obtainedSpecimen Collected Method Typethe type of procedure or method used to collect the specimen.Fine needle aspiration | Abdominal/ascites effusion | Biopsy | Bronchial alveolar lavage (BAL) | Bronchial brushing/washing | Mediastinoscopy | Pericardial effusion | Pleural effusion | Pleural lavage | Sputum, induced | Sputum, spontaneous | Other | Thoracotomy | Sternotomy | Bronchoscopy
Specimen - 21770262261834v2Number of patients from whom samples have been collectedSpecimen Collected Patient CountNumeric count of the number of patients for whom tissue samples are collected. 
Specimen - 217702664332v5Sample PeriodSpecimen Collected Period Typethe timeframe of specimen collection relative to treatment and diagnosis.Complete response | Cycle 1 - Day 8 | Cycle 1 - Day 21 | Cycle 4 - Day 8 | Cycle 4 - Day 21 | Cycle 8 - Day 1 | Cycle 12 - Day 1 | Pre-registration | Post-treatment | Pre-diagnosis | Pre-treatment | Unknown | Baseline | Death | Progression/Relapse | Diagnosis of second malignancy | After study entry | Diagnosis of primary | Second-look surgery | Other
Specimen - 21770262548335v1Breast SpecimenSpecimen Collected Submission TypeText description of the type of tissue specimen submitted for review.Single specimen | Main specimen with separately submitted margins
Specimen - 21770262188550v1Time of samplingSpecimen Collected Textthe sample collected from the patient for analysis or examination. 
Specimen - 217702664192v4Time Specimen CollectedSpecimen Collected Timethe time at which a specimen was collected. 
Specimen - 21770262008060v1Specimen Collection MethodSpecimen Collection Method TypeType of method used for specimen acquisition, using an enumerated set of surgical and procedural approaches. .Not Specified | Core Needle Biopsy | Surgical Biopsy | FNA | Axill Node Dissect | Breast Bx | Exc Bx/Lumpectomy | Incisional Bx | Lumpectomy w/LN Dissection | Needle Bx | Partial Mastectomy | Punch Bx Skin | Sentinel Node Bx | Other | MASTECTOMY | Modified Radical Mastectomy
Specimen - 21770262004369v4Sample No.Specimen Collection Sampling Numberthe specimen collection sample number. 
Specimen - 21770262007033v1Have or will specimens be shipped within ten days of registrationSpecimen Confirmation Submitted Ind-2the yes/no indicator whether there was confirmation that a specimen was submitted or shipped.No | Yes
Specimen - 21770262222481v1Sample periodSpecimen Course Collection Numberthe completed course number during which a specimen was collected. 
Specimen - 21770263357860v1Were all specimens collected at this visitSpecimen Current Patient Visit Collected Ind-2the yes/no question related to the sample collected at the present visit from the patient for analysis or examination.No | Yes
Specimen - 21770262673869v1 Specimen First Weight java.lang.FloatSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Preceding all others in time or space or degree.:The vertical force exerted by a mass as a result of gravity._Generic value domain for a primitive java datatype that is Single-precision floating point number (32-bit IEEE 754). 
Specimen - 21770263005037v1Date of tissue fixationSpecimen Fixative Datethe date tissues or cells were prepared for microscopic study. 
Specimen - 21770263005035v1Duration of fixationSpecimen Fixative Durationthe duration of fixation relating to tissues or cells prepared for microscopic study. 
Specimen - 217702665080v3Other, specifySpecimen Fixative Specifythe free text field to identify other fixatives or chemicals used to preserve a tissue specimen. 
Specimen - 217702665078v3FixativeSpecimen Fixative Typethe field to identify the type of fixative used to preserve a tissue specimen.RNAlater | Glutaraldehyde | Saline | OCT media | Formalin | Other | Unknown
Specimen - 21770262194303v1# Specimens FrozenSpecimen Frozen NumberThe number of specimens frozen. 
Specimen - 21770263123687v1Is there frozen tissue available?Specimen Frozen Tissue Availability IndicatorText indicator to signify whether frozen tissue is available.Unknown | No | Yes
Specimen - 217702664342v3Specimen ID NumberSpecimen Identifier Numbera unique identification number for the laboratory specimen submitted for analysis or bank storage. 
Specimen - 21770262181544v1Date of ImmunofixationSpecimen Immunofixation Lab Datethe date on which a patient laboratory specimen is processed using an immunofixation technique. 
Specimen - 21770262626411v1Specimen sourceSpecimen Location Anatomic Site Namename of the organ site (single) within the body related to the location of a specimen.Mammary Gland | Ear, Pinna (External) | Adipose | Amniotic Fluid | Testicle | Vena Cava, Inferior/Superior | Neck/Chest | Vein | Adenoid | Leptomeninges | Other | Epidural space | Lymph node(s) Para aortic | Lymph node(s) Scalene | Lymph nodes(s) Mediastinal | Lymph node(s) Regional | Lymph node(s) Distant | Retro-orbital Area | Paraspinal Ganglion | Nerve(s) Cranial | Lymph Node(s) Subclavicular | Rectosigmoid Junction | Splenic Flexure | Transverse Colon | Ascending Colon Hepatic Flexure | Floor of Mouth | Alveolar Ridge | Pineal Gland | Clitoris | Gastroesophageal Junction | Trunk, Superficial | Urethra | Peritoneum | Upper extremity | Placenta | Antrum | Cardia | Capillary | Cartilage | Lacrimal Gland | Ligament | Tendon | Umbilical Cord | Vas Deferens | Colon, mucosa only | Carotid body | Ampulla of Vater | Ganglia | Foreskin | Fluid | Esophagus, Mucosa only | Effusion | Parathyroid | Oral Cavity, Mucosa only | Nails | Mesothelium | Trachea/Major Bronchi | Tonsil, Pharyngeal | Synovium | Small Bowel, Mucosa only | Stomach, Mucosa only | Skeletal Muscle | Peri-orbital Soft Tissue | Nasal Soft Tissue | Mediastinal Soft Tissue | Lymph Node(s) Submandibular | Lymph Node(s) Splenic | Lymph Node(s) Retroperitoneal | Lymph Node(s) Popliteal | Lymph Node(s) Parotid | Lymph Node(s) Occipital | Lymph Node(s) Mesenteric | Lymph Node(s) Iliac-external | Lymph Node(s) Iliac-common | Lymph Node(s) Femoral | Lymph Node(s) Epitrochlear | Skeletal Bone | Extremities | Tibia | Soft Tissue | Not Applicable | Oropharynx | Nasal Cavity | Aortic Body | Spinal Cord | Esophagus | Appendix | Ascending colon | Bone | Bone marrow | Brain | Carina | Cecum | Cerebrospinal fluid | Chest wall | Descending colon | Diaphragm | Fallopian tube | Lymph nodes | Mediastinum | Neck | Pericardium | Pleura | Prostate | Rectum | Trunk | Axilla | Breast | Heart | Kidney | Hip | Wrist | Chest | Abdomen | Vulva | Vertebra | Frontal lobe | Cerebellum | Central nervous system | Spine | Tonsil | Spleen | Buccal mucosa | Hard palate | Parotid gland | Thymus | Ovary | Stomach | Mouth | Thorax | Genitourinary | Ischium | Retroperitoneum | Skull | Mandible | Maxilla | Sternum | Ribs | Scapula | Clavicle | Humerus | Femur | Fibula | Ilium | Lung | Liver | Skin | Lymph node | Anus | Large bowel | Jejunum | Ileum | Pelvis | Vagina | Pancreas | Cervix | Colon | Uterus | Adrenal gland | Anal sphincter | Blood | Aorta | Artery | Back | Buttock | Bronchus | Conjunctiva | Salivary gland | Scalp | Lip | Testicle | Duodenum | Eye | Gallbladder | Intestine | Larynx | Penis | Tongue | Muscle | Retina | Trachea | Peritoneal cavity | Pharynx | Scrotum | Arm | Leg | Ankle | Palate | Acetabulum | Anal canal | Anorectum | Bile duct | Blood vessel | Brain stem | Bronchiole | Brow | Buccal cavity | Carotid artery | Cerebral cortex | Colon and rectum | Connective tissue | Ear | Endocrine gland | Finger | Foot | Forearm | Gastrointestinal tract | Groin | Gum | Hand | Hypopharynx | Lymphoma | Nasopharynx | Oral cavity | Patella | Pituitary gland | Pylorus | Sacrum | Shoulder | Sigmoid colon | Thigh | Uvula | Vertebral column | Ureter | Cerebrum | Throat | Bladder | Omentum | Mesentery | Calf | Chin | Elbow | Epididymis | Forehead | Jaw | Knee | Laryngopharynx | Liver and intrahepatic duct | Liver/Spleen | Lumbar spine | Lymph Node(s) Int Mammary | Lymph Node(s) Mammary | Lymph Node(s) Axilla | Lymph Node(s) Cervical | Lymph Node(s) Hilar | Lymph Node(s) Inguinal | Lymph Node(s) Supraclav | Lymph Node(s) Pelvic | Mini Mantle | Neck/Chest/Abdomen/Pelvis | Nerve | Ocular Orbits | PA/Lat | Perianus | Popliteal fossa | Round ligament | Sinus(es) | Sinus(es), Maxillary | Small intestine | Spine/Femur | Spine/Femur/Radius | Subcutaneous tissue | Thoracic spine | Thoracic/Lumbar spine | Thyroid gland | Urinary tract | Whole body | Abdomen/Pelvis | Abdominal wall | Antecubital fossa | Aqueous Fluid | Auditory canal | Autonomic nervous system | Bowel | Broad ligament | Bronchus and Lung | Central Line Catheter | Cervical spine | Cervical/Thoracic/Lumbar spine | Chest/Abdomen/Pelvis | Chest/Pelvis | Common duct | Ear canal | Esophagogastric junction | Fundus of stomach | Head - face or neck, NOS | Head/Neck | Head/Neck/Chest/Adb/Pelvis | Hepatic duct | Joints | Tongue, Base of tongue
Specimen - 21770263579605v1Were specimens collected for NKp30 isoforms correlative biology studySpecimen Natural Killer Cell-Mediated Cytotoxicity Pathway Isoform Correlative Study Collected Yes No Unknown Not Applicable Indicatorthe yes/no/unknown/not applicable indicator that asks whether a specimen was collected for a correlative study relating to NKp30 isoforms.No | Yes | Unknown | Not Applicable
Specimen - 21770263544445v1Was specimen collected-NKp30 IsoformsSpecimen Natural Killer Cell-Mediated Cytotoxicity Pathway Isoforms Collected Yes No Indicatorthe yes/no indicator that asks whether a specimen was collected relating to NKp30 isoforms.No | Yes
Specimen - 21770263334808v1Uncharged Slides CountSpecimen Negation Charge Slide Submission CountA part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._An operation in which a term denies or inverts the meaning of another term or construction._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._the quantity of the specified item. 
Specimen - 21770263334809v1Uncharged Slides ThicknessSpecimen Negation Charge Slide Submission Thickness MeasurementA part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._An operation in which a term denies or inverts the meaning of another term or construction._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._The dimension between two surfaces of an object, usually the smallest dimension as opposed to the width or the length: also, viscous consistency._Measurement; the size or magnitude of something. 
Specimen - 21770262178120v1Stored in bufferSpecimen Nipaspirate Buffer Stored CodeTBD1 | 0 | 9 | 3
Specimen - 21770262178269v1From which breast was the specimen taken?Specimen Nipaspirate Source CodeTBD9 | 1 | 2 | 3
Specimen - 21770262182684v1Specify reasonSpecimen Not Submitted Reasonthe reason the patient's or participant's specimen was not submitted.Intercurrent illness | Sample not required | Insufficient/scant sample | Patient unable to submit sample | Patient did not keep appointment | Patient request | Statutory holiday | Unsuccessful blood draw | Facility will not release block | Block depleted/insufficient tissue | Other | Institution error | Patient refusal | Not available | Institution won't release | Sample lost or destroyed
Specimen - 21770262190544v1Not submitted specifySpecimen Not Submitted Specifythe specified reason a specimen was not submitted with the specimen form. 
Specimen - 21770262007005v3Reason research tissue specimen was not submittedSpecimen Not Submitted Textthe free-text field to specify the reason a research specimen was not submitted. 
Specimen - 21770263369252v1Was the oral specimen collectedSpecimen Oral Cavity Collected Ind-2the yes/no question related to sample collected from the patient for analysis or examination from the cavity located at the upper end of the alimentary canal, behind the teeth and gums that is bounded on the outside by the lips, above by the hard and soft palates and below by the tongue.No | Yes
Specimen - 21770263369269v1Specify reasonSpecimen Oral Cavity Negation Collected Specifythe free-text field related to not having sample collected from the patient for analysis or examination from the cavity located at the upper end of the alimentary canal, behind the teeth and gums that is bounded on the outside by the lips, above by the hard and soft palates and below by the tongue. 
Specimen - 21770262548401v1Other:Specimen Other Therapeutic Effect TextText description of a therapeutic response other than those identified. 
Specimen - 21770263369254v1Was the penile/scrotal specimens collectedSpecimen Penis Scrotum Collected Ind-2the yes/no question related to the sample collected from the patient for analysis or examination from the male organ of urination and copulation or from the musculocutaneous pouch that encloses the testicles.No | Yes
Specimen - 21770263369270v1Specify reasonSpecimen Penis Scrotum Negation Collected Specifythe free-text field related to not having sample collected from the patient for analysis or examination from the male organ of urination and copulation or from the musculocutaneous pouch that encloses the testicles. 
Specimen - 21770263369256v1Was the perianal specimen collectedSpecimen Perianal Region Collected Ind-2the yes/no question related to the sample collected from the patient for analysis or examination from the skin area around the anus.No | Yes
Specimen - 21770262189050v1Time period specimen collectedSpecimen Period Collected Timeinformation about the time period during which a specimen was collected.Approximately 52 weeks post randomization | Approximately 5 years post randomization | Approximately 12 weeks post randomization | Approximately 3 years post randomization | Progression | Surgery | Pre-treatment | During Initial Treatment | During Follow-Up, No. Therapy | At Relapse/Progression | Baseline | Recurrence | Original diagnosis | 2 weeks after final bevacizumab dose | Bevacizumab dose #5 | Bevacizumab dose #3 | 2 weeks after final vaccine dose | Vaccine dose #7 | Vaccine dose #5 | 24 hours after ibrutinib dose | 7 hours after ibrutinib dose | 4 hours after ibrutinib dose | 2 hours after ibrutinib dose | 1 hour after ibrutinib dose | 0-30 mins prior to ibrutinib dose | At end of crossover treatment | After cycle 1 of crossover | At end of initial treatment | After cycle 1 of initial treatment | Cycle 7 week 28 | Cycle 5 week 20 | Cycle 3 week 12 | During chemotherapy | At disease progression | 6 months | 12 months
Specimen - 21770262186564v1Storage MethodSpecimen Preservation Method TypeCryopreservation means of storing cells, tissues, or organs.-80 Deg C | LN2
Specimen - 21770262178278v1Temperature of specimen during processing:Specimen Process Temperature During CodeTBD9 | 3 | 1 | 2
Specimen - 21770262178292v1Temperature of original sample prior to processing:Specimen Process Temperature Prior CodeTBD9 | 2 | 3 | 8 | 1
Specimen - 21770262178293v1Approximately how long was the original sample maintained at the above temperature prior to processing (value):Specimen Process Time Prior ValueTBD 
Specimen - 21770262178264v1Approximate time elapsed between specimen collection and final storage: (unit)Specimen Process Time Unit CodeTBD9 | 1 | 2 | 3
Specimen - 21770262178294v1Approximately how long was the original sample maintained at the above temperature prior to processing (unit):Specimen Process Time Unit Prior CodeTBD9 | 1 | 2 | 3
Specimen - 21770262178263v1Approximate time elapsed between specimen collection and final storage: (value)Specimen Process Time ValueTBD 
Specimen - 21770263005015v1Volume ReceivedSpecimen Quantity Amount Milliliter NumberNumeric value for the amount or quantity of a specimen received, measured in milliliters (mL). 
Specimen - 21770262004951v4.1UnitsSpecimen Quantity UOMthe unit of measure associated with the specimen.dL | dm | g | L | m | mcg | mcL | mEq | mL | ng | pg | Eq | IU | MMM | Osmol | cc | cm | gravity | kg | mOsmol | mU | mcm | mg | milliunit | mm | mmol | mol | nm | unit | N/A | % | mm3 | VP | mm^3
Specimen - 21770262241682v1Number of specimens receivedSpecimen Received Countthe number of specimens received. 
Specimen - 217702664196v3Time of Receipt of SpecimensSpecimen Received Timea time of day when a sample of tissue, blood or urine collected for analysis or research is received by a facilty. 
Specimen - 21770262191144v1Total volume/weightSpecimen Received Total Measurementthe total volume or weight of a specimen received. 
Specimen - 217702664920v3Patient's initial consent for sharing specimen(s) with outside researchers.Specimen Research Consent Shared Ind-3the yes/no indicator that asks whether the patient has given initial consent to share his/her specimen with outside researchers.No | Yes | Unknown
Specimen - 21770262007102v1Site from which specimen was takenSpecimen Site ICD-O Codean ICD-O topography code associated with an anatomic site from which a tissue or tumor specimen was taken.C00 | C00-C14 | C00.0 | C00.1 | C00.2 | C00.3 | C00.4 | C00.5 | C00.6 | C00.8 | C00.9 | C01 | C01.9 | C02 | C02.0 | C02.1 | C02.2 | C02.3 | C02.4 | C02.8 | C02.9 | C03 | C03.0 | C03.1 | C03.9 | C04 | C04.0 | C04.1 | C04.8 | C04.9 | C05 | C05.0 | C05.1 | C05.2 | C05.8 | C05.9 | C06 | C06.0 | C06.1 | C06.2 | C06.8 | C06.9 | C07 | C07.9 | C08 | C08.0 | C08.1 | C08.8 | C08.9 | C09 | C09.0 | C09.1 | C09.8 | C09.9 | C10 | C10.0 | C10.1 | C10.2 | C10.3 | C10.4 | C10.8 | C10.9 | C11 | C11.0 | C11.1 | C11.2 | C11.3 | C11.8 | C11.9 | C12 | C12.9 | C13 | C13.0 | C13.1 | C13.2 | C13.8 | C13.9 | C14 | C14.0 | C14.2 | C14.8 | C15 | C15-C26 | C15.0 | C15.1 | C15.2 | C15.3 | C15.4 | C15.5 | C15.8 | C15.9 | C16 | C16.0 | C16.1 | C16.2 | C16.3 | C16.4 | C16.5 | C16.6 | C16.8 | C16.9 | C17 | C17.0 | C17.1 | C17.2 | C17.3 | C17.8 | C17.9 | C18 | C18.0 | C18.1 | C18.2 | C18.3 | C18.4 | C18.5 | C18.6 | C18.7 | C18.8 | C18.9 | C19 | C19.9 | C20 | C20.9 | C21 | C21.0 | C21.1 | C21.2 | C21.8 | C22 | C22.0 | C22.1 | C23 | C23.9 | C24 | C24.0 | C24.1 | C24.8 | C24.9 | C25 | C25.0 | C25.1 | C25.2 | C25.3 | C25.4 | C25.7 | C25.8 | C25.9 | C26 | C26.0 | C26.8 | C26.9 | C30 | C30-C39 | C30.0 | C30.1 | C31 | C31.0 | C31.1 | C31.2 | C31.3 | C31.8 | C31.9 | C32 | C32.0 | C32.1 | C32.2 | C32.3 | C32.8 | C32.9 | C33 | C33.9 | C34 | C34.0 | C34.1 | C34.2 | C34.3 | C34.8 | C34.9 | C37 | C37.9 | C38 | C38.0 | C38.1 | C38.2 | C38.3 | C38.4 | C38.8 | C39 | C39.0 | C39.8 | C39.9 | C40 | C40-C41 | C40.0 | C40.1 | C40.2 | C40.3 | C40.8 | C40.9 | C41 | C41.0 | C41.1 | C41.2 | C41.3 | C41.4 | C41.8 | C41.9 | C42 | C42.0 | C42.1 | C42.2 | C42.3 | C42.4 | C44 | C44.0 | C44.1 | C44.2 | C44.3 | C44.4 | C44.5 | C44.6 | C44.7 | C44.8 | C44.9 | C47 | C47.0 | C47.1 | C47.2 | C47.3 | C47.4 | C47.5 | C47.6 | C47.8 | C47.9 | C48 | C48.0 | C48.1 | C48.2 | C48.8 | C49 | C49.0 | C49.1 | C49.2 | C49.3 | C49.4 | C49.5 | C49.6 | C49.8 | C49.9 | C50 | C50.0 | C50.1 | C50.2 | C50.3 | C50.4 | C50.5 | C50.6 | C50.8 | C50.9 | C51 | C51-C58 | C51.0 | C51.1 | C51.2 | C51.8 | C51.9 | C52 | C52.9 | C53 | C53.0 | C53.1 | C53.8 | C53.9 | C54 | C54.0 | C54.1 | C54.2 | C54.3 | C54.8 | C54.9 | C55 | C55.9 | C56 | C56.9 | C57 | C57.0 | C57.1 | C57.2 | C57.3 | C57.4 | C57.7 | C57.8 | C57.9 | C58 | C58.9 | C60 | C60-C63 | C60.0 | C60.1 | C60.2 | C60.8 | C60.9 | C61 | C61.9 | C62 | C62.0 | C62.1 | C62.9 | C63 | C63.0 | C63.1 | C63.2 | C63.7 | C63.8 | C63.9 | C64 | C64-C68 | C64.9 | C65 | C65.9 | C66 | C66.9 | C67 | C67.0 | C67.1 | C67.2 | C67.3 | C67.4 | C67.5 | C67.6 | C67.7 | C67.8 | C67.9 | C68 | C68.0 | C68.1 | C68.8 | C68.9 | C69 | C69-C72 | C69.0 | C69.1 | C69.2 | C69.3 | C69.4 | C69.5 | C69.6 | C69.8 | C69.9 | C70 | C70.0 | C70.1 | C70.9 | C71 | C71.0 | C71.1 | C71.2 | C71.3 | C71.4 | C71.5 | C71.6 | C71.7 | C71.8 | C71.9 | C72 | C72.0 | C72.1 | C72.2 | C72.3 | C72.4 | C72.5 | C72.8 | C72.9 | C73 | C73-C75 | C73.9 | C74 | C74.0 | C74.1 | C74.9 | C75 | C75.0 | C75.1 | C75.2 | C75.3 | C75.4 | C75.5 | C75.8 | C75.9 | C76 | C76.0 | C76.1 | C76.2 | C76.3 | C76.4 | C76.5 | C76.7 | C76.8 | C77 | C77.0 | C77.1 | C77.2 | C77.3 | C77.4 | C77.5 | C77.8 | C77.9 | C80 | C80.9
Specimen - 21770262220552v1Storage Temperature (Centigrade)Specimen Storage Temperature NumberThe temperature at which the specimen was stored expressed in degrees Celsius. 
Specimen - 21770262547385v1Storage Temperature TypeSpecimen Storage Temperature TypeThe environment in which the specimen is stored.Refrigerated | Ambient | Frozen | Other | N/A
Specimen - 21770262195145v1NotesSpecimen Submission Comments TextA free text field relating to a specimen submission. 
Specimen - 21770262190535v1Submission statusSpecimen Submission Statusthe status of specimen submission with the specimen form.Submitted | Not submitted
Specimen - 21770262990438v1Type of tissue submittedSpecimen Submission TypeText term to describe the form in which biospecimen material was submitted for review or evaluation.Paraffin block(s) | Slide(s)
Specimen - 21770262003954v4Number of specimens submittedSpecimen Submitted Countthe number of specimens submitted. 
Specimen - 21770262183870v1Was a specimen shippedSpecimen Submitted Ind-2the yes/no indicator that asks whether a specimen was shipped or submitted.No | Yes
Specimen - 21770262004257v3Reasons for specimen submissionSpecimen Submitted Reasonthe reason a specimen was submitted.Prestudy submission | Complete remission/response specimen | Relapse/recurrence specimen | Other specimen, specify
Specimen - 21770262007103v1Paperwork sentSpecimen Submitted Report Typea report or form which is included with a specimen shipment for analysis.Specimen Shipping Form | Copy of Pathology Report | Copy of Pathology Checklist | Copy of Operative Report
Specimen - 21770262658018v1AdequacySpecimen Submitted Sufficient Text TypeThe values used to describe whether bits of tissue, blood or urine that is taken or used for research purposes meets the condition or quantitative measure necessary for evaluation.Adequate for evaluation | Inadequate for evaluation
Specimen - 21770262006911v1Specimen TypeSpecimen Submitted Typethe type of specimen submitted.Periph Bld Heparin CPT | Periph Bld Red Grey SST | Frozen Primary Tumor | RPMI Tumor Fresh | PBS Tumor Fresh | Peripheral Blood, PAXgene DNA | Plasma/Serum heparin | Peripheral Blood, citrate CPT | Periph Bld Red Top | Periph Bld Heparin Green Top | Peripheral Blood, EDTA purple top tube | Peripheral Blood, DNA PAXgene tube | Peripheral Blood, RNA PAXgene tube | Plasma, EDTA purple top tube | Serum, Red top tube | Tumor tissue, snap frozen | Periph Bld Red Grey SST | Plasma/Serum Citrate CPT | Periph Bld Immunicon | Serum, SST | Plasma, EDTA | Peripheral blood, ACD | Unstained slides from breast tumor area | Unstained slides from residual breast tumor | Representative block of residual tumor | Core biopsy tissue in RNAlater | Formalin-fixed tumor tissue | OCT-embedded tumor/tissue | PBMC | EDTA Lavender Top Tube | Serum Red Top | RBC pellet | 7.5 cc Cell Saver | 5 cc Green | 10 ml SST/Tiger | Pharmacogenomics EDTA (Purple Top) | 10 ml CPT | Blue Top CPT Tube | Purple Top EDTA Tube | SST Red/Gray Top Tube | Tumor, fresh in PBS | Frozen section | Peripheral blood stem cell harvest | Karyotype | Bone marrow core biopsy | Red blood cells | Leukocytes | 5 cc Green Top | 5 ml EDTA Purple Top | H&E slide | Cores from normal prostate tissue | Cores from prostate tumor tissue | Normal block | Peritoneal surface tumor | Primary colon tumor | Paraffin embedded surgical block | Sections on superfrost plus slides | Other | Platelet-poor plasma | Whole Blood (EDTA) (2 x 5ml) | Whole blood (EDTA) (1 x 7ml) | Frozen serum | Frozen Plasma | Bone marrow | Other | Peripheral blood | Serum | Urine | Tissue Microarray | SNAP frozen non-malignant tissue | SNAP frozen tumor tissue | Slides of tumor tissue | Bone marrow aspirate | Bone marrow biopsy | Bone marrow (aspirate smear) | Bone marrow (biopsy section) | Peripheral blood smear slide | Paraffin blocks | Stained slides | Unstained slides | Cytology slides (stained) | Cytology slides (unstained) | Snap frozen tumor/tissue | Blood | JT-Other | JR-Buccal Scrapings | JL-Saliva | JC-CSF | JH-Punch | JF-Fresh Tissue | JB-Paraffin Block | JN-Unstained Slides | JU-Urine | JW-Whole Blood | JX-Buffy | JP-Plasma | JS-Serum | Fresh Frozen Tumor Tissue | Peripheral blood-Frozen | Peripheral blood-Fresh | Plasma | Nipple Aspirate Fluid | Breast Adipose Tissue | DNA | Frozen metastatic tissue | None | Cells | Whole blood (7-10 mL green top tube) | Plasma (from blood collected in 10 mL lavender top tube) | Bone marrow smear | Formalin fixed paraffin embedded tissue block | Punch biopsies from FFPE block | Unstained superfrost plus slides | Whole blood | Buffy coat | Fixed tissue | Frozen tissue | Tumor block | Whole venous blood | Citrated plasma | EDTA plasma | Tissue
Specimen - 21770262722734v3Other, specifySpecimen Therapeutic Effectthe free-text field to specify the pathologic change in the specimen tissues that show evidence of treatment with cancer therapy prior to collection of the specimen. 
Specimen - 217702664781v3Does analysis of tissue show evidence of therapeutic effects?Specimen Therapeutic Effect Ind-3the yes/no indicator that asks whether a pathologic specimen tissues show evidence of treatment with cancer therapy prior to collection of the specimen.No | Yes | Unknown
Specimen - 21770262548397v1Evidence of therapeutic effects?Specimen Therapeutic Effect TypeTerms to identify evidence of therapeutic effects on a specimen's histologic findings.No | Apocrine/eosinophilic | Hystiocytoid | Cytoplasmic vacuolation | Lobular appearance | Other
Specimen - 217702665085v3Percent of Tissue ExaminedSpecimen Tissue Examined Percentage Amountthe measurement by percentage of the amount of tumor tissue examined and analyzed for cancer cells. 
Specimen - 21770262178123v1Is specimen a microdissected tissue specimen?Specimen Tissue Microdissected CodeTBD1 | 0 | 9 | 3
Specimen - 21770262178261v1Associated pre-invasive neoplastic changes:Specimen Tissue Pre-invasive Neoplastic Change CodeTBD999 | 97 | 4 | 12 | 11 | 1 | 2 | 3 | 5 | 6 | 7 | 8 | 9 | 10
Specimen - 21770262178262v1Associated pre-invasive neoplastic changes: (Other, specify)Specimen Tissue Pre-invasive Neoplastic Change Other TextTBD 
Specimen - 21770262178266v1Method of preservationSpecimen Urine Preservation CodeTBD9 | 8 | 1 | 2
Specimen - 21770262178197v1Time period of original urine collection, specifySpecimen Urine Time Period Other TextTBD 
Specimen - 21770262190876v1Other, specifySpeciment Biological Storage Specifythe specified type of biological storage of a specimen. 
Specimen - 21770262192810v1Reason for SubmissionSubmission Reason Description TextThe description indicating the reason for the specimen submittal.1st Submission While On Study | Subsequent Submission While On Study
Specimen - 21770262502965v1SpecimenTissue Specimen Submitted TypeThe type of tissue specimen submitted.Fresh Frozen Surgical Specimen | 2 H&E Stained Representative Slides | 1 paraffin embedded tissue block
Specimen - 21771982003907v3Description of SampleSample Description Text Text description of a sample or specimen. 
Specimen - 21771982222728v1Sample TypeSample Source Text NameText name of cell source from which a sample was secured.Buccal Smear | Serum | Sputum | N/A | Bronchial Washing | Buccal Brushing | NPBL | Pleural | Saliva | Tissue | NAF | Ductal Epithelial Cells
Specimen - 21771983364862v1Was a specimen (whole blood or plasma and PBMC) collected APOBEC3G and/or KSHV Viral LoadSpecimen APOBEC3G Gene Human Herpesvirus 8 Collection Ind-2the yes/no question related to collection of specimen for a gene which may play a role in cell growth and the cell cycle or a gammaherpesvirus that contributes to the development of Kaposi sarcoma.No | Yes
Specimen - 21771983364868v1Please specify the reasonSpecimen APOBEC3G Gene Human Herpesvirus 8 Negation Collection Reasonan explanation related to not collecting specimen for a gene which may play a role in cell growth and the cell cycle or a gammaherpesvirus that contributes to the development of Kaposi sarcoma.Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error
Specimen - 21771983364869v1Other, specifySpecimen APOBEC3G Gene Human Herpesvirus 8 Negation Collection Specifythe free-text field related to not collecting specimen for a gene which may play a role in cell growth and the cell cycle or a gammaherpesvirus that contributes to the development of Kaposi sarcoma. 
Specimen - 21771982178272v1Age at specimen collectionSpecimen Age Collected ValueParticipant's age in years at the time of specimen collection. 
Specimen - 21771982178287v1Number of aliquots/slides storedSpecimen Aliquots Slides Stored ValueTBD 
Specimen - 21771982178200v1Approximate total amount remaining unitSpecimen Amount Remaining Unit CodeUnit of quantity of specimen currently available at site.3 | 8 | 4 | 5 | 6 | 7 | 2 | 1
Specimen - 21771982178271v1Approximate total amount remainingSpecimen Amount Remaining ValueQuantitative value of specimen currently available at site. 
Specimen - 21771982178215v1.1Approximate total amount stored (Unit)Specimen Amount Stored Unit CodeUnit of the quantity of specimen originally stored.3 | 8 | 4 | 5 | 6 | 7 | 2 | 1
Specimen - 21771982178286v1Approximate total amount storedSpecimen Amount Stored ValueQuantitative value of specimen originally stored. 
Specimen - 21771982178121v1Specimen availableSpecimen Available CodeFlag to determine if there is some specimen available/remaining at the site.1 | 0 | 9 | 3
Specimen - 21771982178277v1Cell CountSpecimen Bone Marrow Cell Count ValueThe number of cells (in millions) in a stored cell specimen taken from bone marrow. 
Specimen - 21771982178276v1Percentage of Blast cellsSpecimen Bone Marrow Plasma ValuePercentage of plasma cells of the total cells stored from a bone marrow specimen collection. A plasma cell is a type of white blood cell that produces antibodies. 
Specimen - 21771983321254v1Will/has the LBC specimen be(en) drawn in the timeframe of 4 days before through 7 days after entry?Specimen Cervical Occurrence Collection Ind-2A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._Relating to a neck, or cervix, in any sense._Occurrence; an instance of something happening._The act of gathering things together; having been brought together in one place._the yes/no question related to specimen characteristics.No | Yes
Specimen - 21771983334801v1Charged Slides CountSpecimen Charge Slide Submission CountA part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._the quantity of the specified item. 
Specimen - 21771983334804v1Charged Slides ThicknessSpecimen Charge Slide Submission Thickness MeasurementA part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._The quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons._A flat rectangular piece of glass on which specimens can be mounted for microscopic study._Submitted; referred for judgment or consideration._The dimension between two surfaces of an object, usually the smallest dimension as opposed to the width or the length: also, viscous consistency._Measurement; the size or magnitude of something. 
Specimen - 21771982178284v1Specimen collectedSpecimen Collected CodeType of specimen that was collected from participant.16 | 3 | 4 | 6 | 11 | 14 | 17 | 18 | 19 | 20 | 1 | 2 | 5 | 7 | 8 | 9 | 10 | 12 | 13 | 15
Specimen - 21771982178199v1Date of specimen collectionSpecimen Collection TextDate on which the specimen was collected. 
Specimen - 21771982178279v1Concentration in ?g/mlSpecimen Concentration ValueConcentration of specimen stored 
Specimen - 21771982178274v1Number of days from specimen collected date since cancer diagnosis dateSpecimen Day Cancer Diagnosis ValueNumber of days between the date the cancer was diagnosed pathologically, and the date on which the tissue specimen was collected. 
Specimen - 21771982178273v1Number of days since 1st specimen collectedSpecimen Day Collected ValueCalculated value at site in number of days. ([Specimen Collected Date]-[Date of 1st specimen collected]) 
Specimen - 21771982178288v1Final storageSpecimen Final Store CodeTemperature specimen was ultimately stored at.97 | 1 | 3 | 4 | 5 | 6
Specimen - 21771982178194v1Final storage (Other, specify)Specimen Final Store Other TextTemperature specimen was ultimately stored at that does not appear on the pick-list. 
Specimen - 21771983357963v1Was a specimen (PBMC or whole blood) collected for HIV DNA quantificationSpecimen Human Immunodeficiency Virus DNA Collection Ind-2the yes/no question related to collection of specimen of the long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell for the virus isolated and recognized as the etiologic agent of AIDS.No | Yes
Specimen - 21771983357969v1Please specify the reasonSpecimen Human Immunodeficiency Virus DNA Negation Collection Reasonan explanation related to not collecting specimen of the long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell for the virus isolated and recognized as the etiologic agent of AIDS.Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error
Specimen - 21771983357970v1Other, specifySpecimen Human Immunodeficiency Virus DNA Negation Collection Specifythe free-text field related to not collecting specimen of the long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell for the virus isolated and recognized as the etiologic agent of AIDS. 
Specimen - 21771983357897v1Was a specimen (plasma or whole blood) collected for HIV-1 RNA levelsSpecimen Human Immunodeficiency Virus Ribonucleic Acid Collection Ind-2the yes/no question related to collection of specimen of the single-stranded long chain of nucleotides containing ribose for the virus isolated and recognized as the etiologic agent of AIDS.No | Yes
Specimen - 21771983357898v1Please specify the reasonSpecimen Human Immunodeficiency Virus Ribonucleic Acid Negation Collection ReasonAn explanation related to not collecting specimen of the single-stranded long chain of nucleotides containing ribose for the virus isolated and recognized as the etiologic agent of AIDS.Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error
Specimen - 21771983357959v1Other, specifySpecimen Human Immunodeficiency Virus Ribonucleic Acid Negation Collection Specifythe free-text field related to not collecting specimen of the single-stranded long chain of nucleotides containing ribose for the virus isolated and recognized as the etiologic agent of AIDS. 
Specimen - 21771983365921v1Was a specimen (plasma) collected for Single Copy HIV Viral LoadSpecimen Human Immunodeficiency Virus Single Copy Viral Load Collection Ind-2the yes/no question related to collecting a specimen for a single copy of number of viral particles in a sample of blood plasma of the cytopathic retrovirus.No | Yes
Specimen - 21771983365922v1Please specify the reasonSpecimen Human Immunodeficiency Virus Single Copy Viral Load Negation Collection Reasonan explanation related to not collecting a specimen for a single copy of number of viral particles in a sample of blood plasma of the cytopathic retrovirus.Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error
Specimen - 21771983365923v1Other, specifySpecimen Human Immunodeficiency Virus Single Copy Viral Load Negation Collection Specifythe free-text field specifying information related to not collecting a specimen for a single copy of number of viral particles in a sample of blood plasma of the cytopathic retrovirus. 
Specimen - 21771982183027v2Biopsy Specimen Numbers Biopsy Specimen NumbersSpecimen Identifier NumberThe number indicating the sample. 
Specimen - 21771983364876v1Was a specimen (tissue punch biopsy) collected for ImmunohistochemistrySpecimen Immunohistochemical Test Collection Ind-2the yes/no question related to collection of specimen for a diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope.No | Yes
Specimen - 21771983364877v1Please specify the reasonSpecimen Immunohistochemical Test Negation Collection Reasonan explanation related to not collecting a specimen for a diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope.Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error
Specimen - 21771983364878v1Other, specifySpecimen Immunohistochemical Test Negation Collection Specifythe free-text field to specify as related to not collecting a specimen for a diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope. 
Specimen - 21771982178291v1Embedding material used?Specimen Preparation Embed CodeIndication of embedding material used in processing cells or tissue prior to storage.7 | 1 | 2
Specimen - 21771982178196v1Embedding material used (Other, specify)?Specimen Preparation Embed Other TextTBD 
Specimen - 21771982178290v1If fixed, Fixative used?Specimen Preparation Fixative CodeIndication of the fixative used in fixing the tissue specimen or cells collected.7 | 1 | 2 | 3
Specimen - 21771982178195v1If fixed, Fixative used (Other, specify)?Specimen Preparation Fixative Other TextTBD 
Specimen - 21771982178289v1Method of preparationSpecimen Preparation Method CodeTBD97 | 3 | 1 | 2
Specimen - 21771982178213v1Method of preparation (Other, specify)Specimen Preparation Method Other TextIndication of how the cells or tissue were prepared prior to storing, other than the methods listed in the pick-list. 
Specimen - 21771983073066v2Was submitted sample prior to ANY radiation or drug therapy?Specimen Prior Intervention Submitted IndicatorRecords if sample was obtained prior to ANY radiation or drug treatment.Data Not Available | Unknown | Yes | No
Specimen - 21771983364890v1Was a specimen (tissue punch biopsy) collected for RNA IsolationSpecimen Ribonucleic Acid Collection Ind-2the yes/no question related to collecting a specimen for a single-stranded long chain of nucleotides containing ribose.No | Yes
Specimen - 21771983364888v1Please specify the reasonSpecimen Ribonucleic Acid Negation Collection Reasonan explanation related to not collecting a specimen for a single-stranded long chain of nucleotides containing ribose._Not required per protocol | Other | Participant refused | Specimen lost on site | Specimen ruined shortly after collection | Scheduling error
Specimen - 21771983364889v1Other, specifySpecimen Ribonucleic Acid Negation Collection Specifythe free-text field related to not collecting a specimen for a single-stranded long chain of nucleotides containing ribose. 
Specimen - 21771982912070v1Sample TypeSpecimen Sampled Source TypeText name of cell source from which a sample was secured.Non-lung specimen | Washing/Lavage | Lung resection/FNA | Brushing | Sputum | Biopsy from bronch
Specimen - 21771983228020v1Sample TypeSpecimen Sampled TypeText descriptor of body fluid or tissue being sampled.Pleural Effusion | Serum | Whole Blood | Urine | Saliva | Hair | CD33 Myeloid Cells | CD3 Lymphoid Cells | Bone Marrow | Apheresis Cells | Abdominal Effusion | Peripheral Blood Mononuclear Cells (PBMC) | Circulating Tumor Cells | Tumor Tissue | Pericardial Effusion | Normal Tissue | Pax Gene RNA | Lymph Node | Leukocytes (White Blood Cells) | Cerebrospinal Fluid (CSF) | Cell Block | CD14/CD15 Myeloid Cells | Macrophages | Lymphocytes | Natural Killer Cells (NK Cells) | CD4 Cells | Stool | Fresh Tissue | Archival Tissue | Plasma
Specimen - 21771982004162v4Specimen SampledSpecimen Sampling TypeType of specimen/body tissue being sampled, using an enumerated set of values.N | R | F | E | W | H | G | J | Z | B | S | P | C | U | M | A | O | Y | L | D | T | V
Specimen - 21771982178119v1Was blood present in stool sampleSpecimen Stool Blood Present CodeTBD1 | 0 | 9 | 3
Specimen - 21771982178117v1Was sample collected using a bowel prepSpecimen Stool Bowel Prep CodeTBD1 | 0 | 9 | 3
Specimen - 21771982178267v1If yes, number of days since bowel prepSpecimen Stool Days Bowel Prep ValueTBD 
Specimen - 21771982178268v1Morphology of sampleSpecimen Stool Morphology CodeTBD1 | 2 | 3 | 5 | 4
Specimen - 21771982178118v1Was sample tested for presence of occult blood?Specimen Stool Occult Blood CodeTBD1 | 0 | 9 | 3
Specimen - 21771982178285v1Specimen stored (type)Specimen Stored CodeType of specimen ultimately stored after processing the specimen that was collected.18 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27
Specimen - 21771982220480v1MethodSpecimen Testing Method Text NameText name for testing method used on samples and specimens.Biochemical | Immunohistochemical | Immunohistochemical and FISH
Specimen - 21771982178281v1Method of acquisitionSpecimen Tissue Acquisition Method CodeTBD97 | 1 | 2 | 3 | 4
Specimen - 21771982178205v1Method of acquisition (Other,specify)Specimen Tissue Acquisition Other TextTBD 
Specimen - 21771982178206v1Anatomical siteSpecimen Tissue Anatomical Site CodeTBD999 | 97 | 13 | 1 | 5 | 14 | 22 | 25 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 2 | 3 | 4 | 6 | 7 | 8 | 9 | 10 | 11 | 12
Specimen - 21771982178122v1Angiogenic changes present?Specimen Tissue Angiogenic Change CodeTBD1 | 0 | 9 | 3
Specimen - 21771982178275v1.1Degree of invasivenessSpecimen Tissue Degree Invasive CodeDegree to which neoplasm has the ability to infiltrate and actively destroy surrounding tissue.3 | 4 | 5 | 6 | 7 | 1
Specimen - 21771982178202v1If Pre-invasive neoplasia, specify:Specimen Tissue Degree Invasive Neoplasia CodeTBD1 | 2 | 3
Specimen - 21771982178280v1.1If invasive tumor, specifySpecimen Tissue Degree Invasive Tumor CodeType of invasive tumor.9 | 1 | 2
Specimen - 21771982178203v1Histologic classification (WHO)Specimen Tissue Histologic Classification CodeTBD14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 999 | 13 | 97 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12
Specimen - 21771982178204v1Histologic classification (WHO) (Other, specify)Specimen Tissue Histologic Classification Other TextTBD 
Specimen - 21771982178209v1Histologic classification (WHO), (Mixed epithelial carcinoma, specify components)Specimen Tissue Histologic Combined/Mixed TextTBD 
Specimen - 21771982178260v1Histologic grade (WHO):Specimen Tissue Histologic Grade CodeTBD9 | 999 | 1 | 2 | 3 | 4 | 5 | 6
Specimen - 21771982178212v1Histologic classification (WHO), (Mixed malignant germ cell tumor, specify components)Specimen Tissue Histologic Mixed Malignant TextTBD 
Specimen - 21771982178210v1Histologic classification (WHO), (Mixed epithelial carcinoma, specify components)Specimen Tissue Histologic Mixed/Epithelial TextTBD 
Specimen - 21771982178211v1Histologic classification (WHO), Teratoma immature, specify components)Specimen Tissue Histologic-Teratoma TextTBD 
Specimen - 21771982178207v1If lymph node, specifySpecimen Tissue Lymph-Node CodeTBD999 | 97 | 1 | 2 | 3 | 4 | 8 | 5 | 6 | 7
Specimen - 21771982178208v1If lymph node, specify (Other, specify)Specimen Tissue Lymph-Node TextTBD 
Specimen - 21771982178214v1.2Organ siteSpecimen Tissue Organ Site CodeBody organ/site the specimen was taken from.97 | 1 | 5 | 14 | 25 | 2 | 3 | 4 | 6 | 7 | 8 | 9 | 10 | 12 | 15 | 16 | 17 | 19 | 20 | 21 | 24 | 23 | 26
Specimen - 21771982178201v1Organ site, specifySpecimen Tissue Organ Site Other TextBody organ/site the specimen was taken from that does not appear on the pick-list. 
Specimen - 21771983326456v1Indicate the level/status that was determined centrally and reported to you.Specimen Tumor Marker Central Pathology Review Statusthe status of the outcome of the process by which specimens are sent to a central lab for confirmatory analysis for tumor markers using standardized methods and result criteria in order to minimize inter-reviewer differences thereby improving the accuracy of pathology data.3 - Undeterminable | 2 - One or both intact | 1- lp and 19q deleted
Specimen - 21854682200800v1Deep MarginsSpecimen Deep Margin Status TypeText represenation to describe the status of the deep margins of a specimen.Negative | Positive Cancer | Positive Dysplasia
Specimen - 21854682200794v1Enface MarginsSpecimen Enface Margin Status TypeText represenation to describe the status of the enface (facing) margins of a specimen.Negative | Positive Cancer | Positive Dysplasia
Specimen - 21854682200797v1Radial MarginsSpecimen Radial Margin Status TypeText represenation to describe the status of the radial (along the central axis of the body) margins of a specimen.Negative | Positive Cancer | Positive Dysplasia
Specimen - 21923082183043v1Date Specimen AnalyzedSpecimen Analyzed DateThe date the specimen was analyzed. 
Specimen - 21929202192919v1Required MaterialsBlood Specimen Submission Materials Required TypeThe materials required for a blood specimen submission.1 Tube Frozen
Specimen - 21929202192955v1Required materialsPathology Slide Submission Materials Required TypeIdentifiying the types of materials required for a pathology slide submission.Copy of Pathology Report | Copy of Operative Report | 3 Permanent Tissue Sectioned Slides | Anatomic Location of Tissue Collection
Specimen - 21929202261856v1Number of samples analyzed (total)Specimen Analysis CountNumeric count of the total number of tissue samples/specimens analyzed. 
Specimen - 21929202261844v1Number of patients from whom samples have been analyzedSpecimen Analysis Patient CountNumeric count of the number of patients from whom tissue samples have been analyzed. 
Specimen - 21929202192951v1Are blocks available for future studies?Specimen Blocks Future IndicatorA yes/no/unknown response to a question that asks whether blocks are available for future studies.Unknown | Yes | No
Specimen - 21929203308922v1Date block sentSpecimen Blocks Submission DateCalendar date on which a specimen block was sent to another organization (or its laboratory). 
Specimen - 21929202192947v1Are blocks included in this submission?Specimen Blocks Submission IndicatorA yes/no/unknown response to a question that asks whether blocks are included in the submission.Unknown | Yes | No
Specimen - 21929202192926v1Required materialsSpecimen Materials Required IndicatorA yes/no response to a question that asks whether or not a specific specimen material is required.No | Yes
Specimen - 21929202192929v1Required materialsTissue Frozen Specimen Submission Materials Required TypeMaterials required in a frozen tissue submission.1 - 10 Vials Frozen Tissue | Copy of Pathology Report | Copy of Operative Report | Anatomic Location of Tissue Form
Specimen - 22416133664650v1Specimen LabelBlood Specimen Label TypeThe type of blood specimen label.8ml CPT tube | 2.5ml RNA Paxgene | 3ml greentop
Specimen - 22416133220470v1Type of Blood SampleBlood Specimen SourceThe source of the blood sample.Blood Draw | Scavenge
Specimen - 22416133219459v1Specimen TypeBlood Specimen TypeThe type of the blood specimen.P | HS | V | A | Unknown
Specimen - 22416132506815v1Specimen TypeBlood Specimen TypeThe name of the blood specimen.Estrone | Estradiol | Testosterone | PSA (total, free) | PSA (total) | PSA (free) | Dihydrotestosterone
Specimen - 22416133219439v1Blood VolumeBlood Specimen VolumeThe volume of the blood sample. 
Specimen - 22416132555521v1 Specimen Accession Number java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A control number unique to an object, used to identify it among the other objects in a collection._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132513680v1 Specimen Activity Status Activity Status Text TypeSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The state of being active; any specific activity.:A condition or state at a particular time._An action taken in pursuit of an objective; the state of being active._A condition or state at a particular time._Text; the words of something written._Type; a subdivision of a particular kind of thing.Disable | Active | Close
Specimen - 22416132553320v1 Specimen Activity Status java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The state of being active; any specific activity.:A condition or state at a particular time._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132241622v1Were specimen(s) submitted to the ACOSOG Central Specimen BankSpecimen American College of Surgeons Oncology Group Submitted Ind-2the yes/no indicator that asks whether specimen(s) were submitted to the ACOSOG Central Specimen Bank.No | Yes
Specimen - 22416132453234v1Time Specimen AnalyzedSpecimen Analyzed TimeThe time the specimen was analyzed. 
Specimen - 22416132008276v2Anterior-deep specimen dimension (cm)Specimen Anterior Posterior Centimeter MeasurementNumeric value to represent the anterior-posterior dimension of a specimen. 
Specimen - 22416132547692v1Time of Specimen Arrival in PathologySpecimen Arrival In Pathology TimeThe time the specimen arrived in pathology. 
Specimen - 22416132830254v1 Specimen Available Quantity java.lang.DoubleSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Available; obtainable or accessible and ready for use or service.:Quantity; how much there is of something that you can measure._Generic value domain for a primitive java datatype that is a Double-precision floating point number (64-bit IEEE 7540). 
Specimen - 22416132513676v1 Specimen Available java.lang.BooleanSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Available; obtainable or accessible and ready for use or service._Generic value domain for a primitive java datatype that is a Boolean value (true or false). 
Specimen - 22416132513679v1 Specimen Barcode java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A machine-readable representation of information in a visual format on a surface. Originally barcodes stored data in the widths and spacings of printed parallel lines, but today they also come in patterns of dots, concentric circles, and hidden in images (Wikipedia)._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132470366v1Date Baseline Surgical Gleason Score ObtainedSpecimen Baseline Gleason Score Datethe date when prostate gland tissue is collected at the start of a clinical trial to identify existing microscopic patterns of cancerous glands and morphology with the Gleason grading system. 
Specimen - 22416133153685v1Specimen TypeSpecimen Biospecimen TypeThe name that describes material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions.Serum Ca 15-3 | Serum CRP | Research blood
Specimen - 22416132715529v1 Specimen Biospecimen Type HL7.ConceptDescriptorSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The type of a material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes. This includes particular types of cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory substances._Generic value domain for HL7 concept descriptors that represent any kind of concept usually by giving a code defined in a code system. 
Specimen - 22416132859489v1Accession Number including a block numberSpecimen Block Accession Numberthe control number and unique section identifier for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination, with or without an enhancement such as staining. 
Specimen - 22416132859529v1Is the accession number (including block number) of the block used to determine the IHC HER2 result availableSpecimen Block Accession Number Immunohistochemistry Staining Method HER2/neu Block Accession Number Present Ind-2the yes/no indicator whether the control number and unique section identifier are present for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination, with or without an enhancement, using immunohistochemical staining techniques (allow for the visualization of antigens via the sequential application of a specific antibody to the antigen (primary antibody), a secondary antibody to the primary antibody and an enzyme complex with a chromogenic substrate) to determine HER2 (the ERBB2 Gene at 17q21.1 encodes ERRB2 Receptor Protein Tyrosine Kinase, a 185 kD type I membrane glycoprotein that controls cell growth with features similar to EGFR. Ligand binding increases phosphorylation of tyrosine residues) status.No | Yes
Specimen - 22416133025051v1Number of BlocksSpecimen Block Received CountNumeric value to represent the number of specimen blocks received by an institution or organization. 
Specimen - 22416133308921v1Date block obtainedSpecimen Block Received DateCalendar date on which a specimen block was received from the laboratory of an organization. 
Specimen - 22416131744v2.31Specimen Block CountSpecimen Block Submission Countthe number of specimen blocks submitted. 
Specimen - 22416132913992v1Number Blocks/SlidesSpecimen Blocks Slide Submission Countthe quantity of a preserved bit of tissue or blood or urine submitted for research purposes on block or slide. 
Specimen - 22416132990413v1Were slides/paraffin blocks able to be sent?Specimen Blocks Slide Submission IndicatorText term to indicate that biospecimen tissue blocks or slides were prepared and submitted for review and evaluation.Yes | No
Specimen - 22416132178254v1Additive used in blood collection?Specimen Blood Additive CodeTBD97 | 99 | 1 | 2 | 3 | 4
Specimen - 22416132178255v1Additive used in blood collection (other, specify)Specimen Blood Additive Other TextTBD 
Specimen - 22416132178258v1Original blood sample was collected as:Specimen Blood Collected as CodeTBD9 | 1 | 2
Specimen - 22416132178265v1Time period of original urine collectionSpecimen Blood Fast CodeTBD9 | 1 | 2
Specimen - 22416132178256v1If Heparin, specify:Specimen Blood Heparin CodeTBD97 | 99 | 1 | 2 | 3
Specimen - 22416132178257v1If Heparin, specify (other, specify):Specimen Blood Heparin Other TextTBD 
Specimen - 22416132719843v1ER status by central pathology reviewSpecimen Breast Carcinoma Estrogen Receptor Status Cental Pathology Review Statusth status or objective appraisal by a centralized laboratory of the estrogen receptor level measured in a primary tumor or in metastases tissue specimen taken from a carcinoma arising from the breast according to standardized procedures and results.Negative | Positive | Unknown | NOT DONE
Specimen - 22416132719848v1PgR status by central pathology reviewSpecimen Breast Carcinoma Progesterone Receptor Status Cental Pathology Review Statusth status or objective appraisal by a centralized laboratory of the progesterone receptor level measured in a primary tumor or in metastases tissue specimen taken from a carcinoma arising from the breast according to standardized procedures and results.Negative | Positive | Unknown | NOT DONE
Specimen - 22416132719842v1Was marker status changed by central pathology reviewSpecimen Breast Carcinoma Tumor Marker Change Cental Pathology Review Ind-2the yes/no indicator whether there was a change in the presence or status of a tumor maker found in a primary tumor or in metastases tissue specimen taken from a carcinoma arising from the breast through the systematic, objective appraisal by a centralized laboratory according to standardized procedures and results.No | Yes
Specimen - 224161364335v3Bronchus specifySpecimen Bronchus Cell Source Specifya text field to describe a source or location from which a tissue or fluid sample is taken to examine cellular composition of the large air passages that lead from the trachea to the lungs. 
Specimen - 22416132727273v1 Specimen CaBIG Identifier java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A globally unique identifier deployed by systems that are compatible with the caGrid._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132897734v1CellularitySpecimen Cellularity CategoryCategory to represent the percent of the tissue in a sample that is occupied by the solid tissue normal.low | medium | high | unknown
Specimen - 22416132940273v1Date results received from Central LabSpecimen Central Laboratory Result Received Datethe date results were received from a Central Lab. 
Specimen - 22416132003948v3Date material(s) sent to central laboratorySpecimen Central Laboratory Submission Datethe date a specimen or related material was sent to the Central Lab. 
Specimen - 22416133379234v1CSF collection time point:Specimen Cerebrospinal Fluid Collection Timepoint TypeA specific point in the time continuum, including those established relative to an event where a portion of the fluid flowing around the brain and spinal cord obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.Not collected | After intraventricular irrigation | Before intraventricular irrigation | After tumor biopsy | Before tumor biopsy
Specimen - 22416133321248v1Will/has a liquid-based cytology (LBC) specimen be(en) collected 7 days or more after the diagnosis of AGC?Specimen Cervical Collection Ind-2A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._Relating to a neck, or cervix, in any sense._The act of gathering things together; having been brought together in one place._the yes/no question related to specimen characteristics.No | Yes
Specimen - 22416132773214v1 Specimen Change Date java.util.DateSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of alteration or modification; changed or altered in form or character.:The particular day, month and year an event has happened or will happen._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. 
Specimen - 22416132919624v1 Specimen Class Specimen Class Text TypeSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Class; a collection of things sharing a common attribute._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._Class; a collection of things sharing a common attribute._Text; the words of something written._Type; a subdivision of a particular kind of thing.Fluid | Cell | Molecular | Tissue
Specimen - 22416132897125v1Planned Time of CollectionSpecimen Collected Expected Timethe planned or expected collection time of a specimen or sample. 
Specimen - 22416132913986v1Visit dateSpecimen Collected Last Occurrence Datethe date during which a specimen was last collected. 
Specimen - 22416132529078v1 Specimen Collection Method java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of gathering something together.:The mode or manner or orderly sequence of events of a process or procedure. (from STED98)_Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132683524v1Specify Time Point(s)Specimen Collection Period FrequencyThe time period in which a bit of tissue, blood or urine that is taken or used for research purposes was gathered.24.0 hours | 20.0 hours | 16.0 hours | 12.0 hours | 8.0 hours | 6.0 hours | 4.0 hours | 3.0 hours | 2.5 hours | 2.0 hours | 1.5 hours | 1.0 hours | 0.75 hours | 0.5 hours | 0.25 hours | 4-8 hours | 0-2 hours | Prior to agent administration | 8-24 hours | 2-4 hours
Specimen - 22416132004542v3Specimen typeSpecimen Collection Period Intervala protocol-specific period or interval when a specimen is collected for banking or analysis.Baseline Specimen | 6-month Specimen
Specimen - 224161364333v4Other specifySpecimen Collection Period Specifythe free-text field to describe some other timeframe of specimen collection. 
Specimen - 22416132003953v3Timing of material collectionSpecimen Collection Period Typethe time/treatment period in which a specimen was collected.Cycle 1, Day 28 | Post-Treatment | Week 24 | Week 25 | Day 30 | Day 15 +/- 2 | Cycle 3, Day 1 | Post-Surgery | Prior to initiation of protocol therapy | Prior to radical prostatectomy | Baseline/pretreatment | Discontinuation of protocol treatment | Stem cell harvest | Pre-Study | Pre-Transplant remission prior to consolidation | Pre-Transplant, post-consolidation chemotherapy | Day 2 | After 1st chemo regimen | After 2nd chemo regimen | Day 50/57 | Day 85 | Day 176 | Day 260 | Day 29 | Prior to Nephrectomy | Nephrectomy | Cycle 1, Day 1 | Day 169 | Day 253 | Time of disease progression/end of study | Cycle 2, day 1 | Cycle 4, day 1 | First relapse | First complete remission | Hour 6 | Hour 8 | Hour 1 | Hour 2 | Hour 3 | Hour 4 | Hour 5 | An additional time point | A regularly scheduled time point | In systemic therapy arm follow-up OFF systemic therapy | In systemic therapy arm follow-up on systemic therapy | During post-operative follow-up OFF systemic therapy | During post-operative follow-up on systemic therapy | Six weeks after completion of operation | Immediately after completion of operation | Hour 7 | Day 42 | Day 38 | Day 35 | Day 32 | Hour 24 | Pre-Baseline | Other | Surgery | Week 8 | 72-96 hour specimen | 48-72 hour specimen | 24-48 hour specimen | Baseline | Week 13 | Progression | 1 mo. Post-transplant | 6 mos. Post-transplant | 12 mos. Post-transplant | Week 12 | Relapse | Recurrence | 3-6 hours | 1-3 hours | 0.5-1 hours | Day 1 treatment cycle 2 | Day 1 treatment cycle 1 | Core 3 | Core 7 | Core 6 | Core 5 | Core 4 | Visit 1 | Visit 2 | Visit 3 | Core 2 | Biopsy | Upon development of MDS | End of treatment | Initial diagnosis | Day 8 | Day 15 | Day 22 | Prostatectomy | Week 4 | At restaging | At time of cetuximab-infusion reactions | End of protocol therapy | Month 3 | Month 6 | Day 8 +/- 2 | Pre-Surgery | Pre-Treatment | Month 15
Specimen - 22416132783931v1 Specimen Collection Status SpecimenCollectionStatusSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of gathering things together; having been brought together in one place.:A condition or state at a particular time._Status of collection of specimenpending | notCollected | overdue | collected
Specimen - 22416132423037v1 Specimen Comment java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A written explanation or criticism or illustration that is added to a book or other textual material._Value Domain for java language String datatype. 
Specimen - 22416132191156v1Unsatisfactory, specifySpecimen Condition Received Specifythe free-text field to specify the condition in which a specimen was received. 
Specimen - 22416132555522v1 Specimen Condition java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A state of being, such as a state of health or physical being._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132185894v1Biopsy proven?Specimen Confirmation Biopsy Ind-2the yes/no indicator whether a confirmed biopsy specimen was taken.No | Yes
Specimen - 22416132940265v1Will patient rebiopsy at the 4 week visitSpecimen Confirmation Biopsy Indicatorthe indicator relating to whether the patient will have a repeat biopsy.Unknown | N/A | Yes | No | Continuing | Not Applicable
Specimen - 22416132423041v1 Specimen Created By java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Indicates the person or authoritative body who brought the item into existence._Value Domain for java language String datatype. 
Specimen - 22416132612992v1 Specimen Created Date java.util.DateSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Brought into existence.:The particular day, month and year an event will happen or has happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. 
Specimen - 22416133623740v1Date Specimen was Decanted and CentrifugedSpecimen Decanted And Centifuged DateThe date on which the specimen was decanted and centrifuged. 
Specimen - 22416132423036v1 Specimen Description java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A statement or an account describing something._Value Domain for java language String datatype. 
Specimen - 22416132773215v1 Specimen Display Name java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Exhibit, present, or demonstrate for viewing.:The words or language units by which a thing is known._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416133005039v1Elapsed time from surgical clamp of blood supply to fixationSpecimen Elapsed Time Surgical Procedure Clamping Fixative Durationthe elapsed time from the surgical clamp of blood supply to fixation of tissues or cells for microscopic study. 
Specimen - 22416133005041v1Was the fixation performed within 20 minutes of the surgical clamp of blood supplySpecimen Elapsed Time Surgical Procedure Clamping Fixative Ind-3the yes/no/unknown indicator that asks whether the fixation was performed within a specified amount of time after the surgical clamp of blood supply.No | Yes | Unknown
Specimen - 22416132897700v1% EosinophilsSpecimen Eosinophilia Percentage ValueNumeric value to represent the percentage of infiltration by eosinophils in a tumor sample or specimen. 
Specimen - 22416132859527v1Is the accession number (including block number) of the block used to determine the ER/PgR result availableSpecimen Estrogen Receptor Progesterone Receptor Block Accession Number Present Ind-2the yes/no indicator whether the control number and unique section identifier were present for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination and used to determine estrogen receptor (widely expressed human Estrogen Receptors (NR3 Family) are cytoplasmic hormone-activated receptors that act as nuclear transcription factors composed of an N-terminal transcription activation/modulation domain, a DNA-binding domain, and a C-terminal steroid-binding domain) and progesterone receptor (specific proteins found in or on cells of progesterone target tissues that specifically combine with progesterone. The cytosol progesterone-receptor complex then associates with the nucleic acids to initiate protein synthesis) status.No | Yes
Specimen - 22416132711768v1 Specimen Experiment Identifier java.lang.LongSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._In the scientific method, an experiment is a set of actions and observations, performed to verify or falsify a hypothesis or research a causal relationship between phenomena. The experiment is a cornerstone of the empirical approach to knowledge. (from Wikipedia):One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). 
Specimen - 22416132519442v1 Specimen Expiration Date and Time java.util.DateSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._To come to a close or end of useable period; termination.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. 
Specimen - 22416132727168v1 Specimen External Identifier java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Happening or arising or located outside or beyond some limits, or especially, some surface.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132513677v1 Specimen First Dimension Position java.lang.IntegerSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Preceding all others in time or space or degree.:The magnitude of something in a particular direction, especially length or width or height.:The particular portion of space occupied by a physical object._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement). 
Specimen - 22416133101109v1 Specimen Flag Availability java.lang.BooleanSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._An indicator that can be set or unset in order to signal whether a particular condition is true.:The quality of being obtainable or accessible and ready for use or service._Generic value domain for a primitive java datatype that is a Boolean value (true or false). 
Specimen - 22416132859515v1Is the accession number (including block number) of the block used to determine the FISH HER2 result availableSpecimen Fluorescence in situ Hybridization HER2/neu Block Accession Number Present Ind-2the yes/no indicator whether the control number and unique section identifier are present for a preserved specimen embedded in support material typically cut into thin slices for microscopic examination and used for fluorescence in situ hybridization (a physical mapping approach that uses fluorescent tags to detect hybridization of probes within metaphase chromosomes or less condensed somatic interphase chromatin) and HER2 (the ERBB2 Gene at 17q21.1 encodes ERRB2 Receptor Protein Tyrosine Kinase, a 185 kD type I membrane glycoprotein that controls cell growth with features similar to EGFR. Ligand binding increases phosphorylation of tyrosine residues) testing.No | Yes
Specimen - 22416132001485v5Specify reasonSpecimen Form Not Submitted Reasonthe free-text field to specify the reason a bit of tissue or blood or urine that is taken or used for research purposes was not submitted with a printed or electronic document with spaces to be filled out. 
Specimen - 22416132001484v4Does specimen accompany this form?Specimen Form Submitted Ind-2the yes/no indicator whether a bit of tissue or blood or urine that is taken or used for research purposes being submitted with a printed or electronic document with spaces to be filled out.No | Yes
Specimen - 22416133110935v1TestSpecimen GI or Urology Test TypeText classification for a type of gastrointestinal (GI) or urologic laboratory procedure performed on a biospecimen.Tissue Pharmacogenetics | Blood Pharmacogenetics | Blood Panitumumab antibody | Blood AMG 479 antibody | Blood biomarker | Urine biomarker | Pharmacodynamics (Acetylation) | Insoluble Biomarker | Soluble Biomarker
Specimen - 22416132399445v1Sample typeSpecimen Genome Analysis Typethe type of specimen to be used in a genomic analysis.Whole blood | Buccal cells
Specimen - 22416132469365v1Date Surgical Gleason Score ObtainedSpecimen Gleason Score Datethe date on which a sample of prostate gland tissue was collected to identify any cells very different from normal cells (pattern 4 or 5) according to the standard Gleason grading system. 
Specimen - 22416132469423v1Any tertiary elements of Gleason 4 or 5 pattern?Specimen Gleason Score Indicatora yes/no indicator to ask if cells very different from normal cells (pattern 4 or 5) were identified in a sample of prostate gland tissue examined using the standard Gleason grading system.No | Unknown | Yes | Not available
Specimen - 22416132474079v1Percent (%)Specimen Gleason Score Percentage Valuea value by percentage estimating the portion of cells in a sample which are different from normal cells as identified in prostate gland tissue examined using the standard Gleason grading system. 
Specimen - 224161365040v3Millimeters of Gleason Pattern 4-5Specimen Gleason Score Positive Measurementfor prostate cancer, a measurement in millimeters of the amount of biopsy tissue containing cancer cells with Gleason Pattern 4 to 5. 
Specimen - 22416132897705v1% GranulocytesSpecimen Granulocyte Infiltration Percentage ValueNumeric value to represent the percentage of infiltration by granulocytes in a tumor sample or specimen. 
Specimen - 224161365062v3Prostate intraepithelial neoplasia (PIN), High GradeSpecimen High Grade Prostatic Intraepithelial Neoplasia Ind-3a yes/no indicator to ask if pathologic exam of the prostate gland showed changes in epithelium regarded as precursors of cancer, including moderate dysplasia and proliferation of secretory cells.No | Yes | Unknown
Specimen - 22416132547718v1HGPINSpecimen High Grade Prostatic Intraepithelial Neoplasia IndicatorA present/absent indicator to ask if pathologic exam of the biopsy showed changes in epithelium regarded as precursors of cancer.Present | Absent
Specimen - 22416132532010v1HGPIN %Specimen High Grade Prostatic Intraepithelial Neoplasia Percentage NumberThe percentage with high grade prostatic intraepithelial neoplasia (HGPIN). 
Specimen - 22416132555520v1 Specimen Identifier java.lang.IntegerSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement). 
Specimen - 22416132423034v1Specimen ID (Identifier)Specimen Identifier java.lang.LongSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Value Domain for java language Long datatype. 
Specimen - 22416132423035v1 Specimen Identifier java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Value Domain for java language String datatype. 
Specimen - 22416132969453v1Inflammatory ChangeSpecimen Inflammation Change CategoryClassification of tissue based on the amount of inflammatory changes present in a specimen.Moderate | Absent | Mild | Severe
Specimen - 22416132897695v1% InflammationSpecimen Inflammation Change Percentage ValueNumeric value to represent local response to cellular injury, marked by capillary dilatation, edema and leukocyte infiltration; clinically, inflammation is manifest by reddness, heat, pain, swelling and loss of function, with the need to heal damaged tissue. 
Specimen - 224161364315v3Inflammatory ChangeSpecimen Inflammation Change Typea qualitative estimate by percent indicating changes in a tissue specimen due to inflammation.10-75% inflammatory cells | <10% inflammatory cells | >75% inflammatory cells
Specimen - 22416132555524v1 Specimen Investigator Comment java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._An individual who conducts scientific research. In a clinical setting this individual actually conducts or/and supervises the clinical investigation and study-related procedures; monitors the safety of the trial subjects and investigational staff (i.e., under whose immediate direction an agent is administered or dispensed to a subject), collects and analyses data and study documents, and provides reports in compliance with applicable requirements.:A written explanation or criticism or illustration that is added to a book or other textual material._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132711767v1 Specimen Investigator java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._An individual who conducts scientific research. In a clinical setting this individual actually conducts or/and supervises the clinical investigation and study-related procedures; monitors the safety of the trial subjects and investigational staff (i.e., under whose immediate direction an agent is administered or dispensed to a subject), collects and analyses data and study documents, and provides reports in compliance with applicable requirements._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132008251v1Date SentSpecimen Lab Submission DateDate the specimen is submitted to the lab. 
Specimen - 2241613834v3Date specimen submittedSpecimen Lab Submitted Datethe date the specimen is submitted to the lab. 
Specimen - 22416132483596v1Specimen LabelSpecimen Label TextA free text field to capture the specimen label information. 
Specimen - 22416132423042v1 Specimen Label java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A brief description given for purposes of identification; an identifying or descriptive marker that is attached to an object._Value Domain for java language String datatype. 
Specimen - 22416133192531v1Time Specimen Received by LaboratorySpecimen Laboratory Arrival TimeClock time for the arrival of a biospecimen in a laboratory for processing/testing. 
Specimen - 22416132555523v1 Specimen Laboratory Comment java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A workplace for the conduct of scientific research.:A written explanation or criticism or illustration that is added to a book or other textual material._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 224161362647v3Date of Collection of Sample for AnalysisSpecimen Laboratory Procedure Collection Datethe date a biological sample (i.e., blood, urine, marrow, tumor, CSF) was collected from the patient for laboratory analysis. 
Specimen - 22416132664762v1Sample test dateSpecimen Laboratory Procedure Datethe date of the medical procedure that involves testing a sample of blood, urine, or other substance from the body. 
Specimen - 22416132405396v1Time specimen shippedSpecimen Laboratory Procedure Submission Timethe time the specimen is submitted to the lab. 
Specimen - 224161364195v3Date of Receipt of SpecimensSpecimen Laboratory Received Datethe date specimens were received by a laboratory or banking institution. 
Specimen - 22416132003949v3Shipped toSpecimen Laboratory Received Location Namethe name of the lab that was sent/received the specimen.ECOG Pathology Coordinating Office | Atkins Lab | Wood Lab | Mayo Central Laboratory for Clinical Trials | Immunologic Monitoring and Cellular Products Lab | Fox Chase Cancer Center | H. Lee Moffitt Cancer Center | Leukemia Immunophenotyping Reference Library | ECOG Cytogenetics Laboratory | Other Central Laboratory | George Sledge | Myeloma Tumor Biology Laboratory | ECOG Leukemia Translational Studies Laboratory
Specimen - 22416133376368v1Ship toSpecimen Laboratory Received Location Textinformation related to the lab that received the bit of tissue or blood or urine._The textual identifier of an organization that is conducting a trial, a central laboratory delivering the data or a laboratory performing a lab test. 
Specimen - 22416132008255v1Name of lab specimen sent toSpecimen Laboratory Received Namethe name of the laboratory or banking institution that received the patient's specimen. 
Specimen - 22416132898846v1 Specimen Life Sciences Identifier Entity Identifier java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:An independently existing thing (living or nonliving).:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132898845v1 Specimen Life Sciences Identifier Namespace java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:In general, a namespace is an abstract container, which is or could be filled by names, or technical terms, or words, and these represent or stand for real-world things. A description logic terminology namespace is a collection of Kind, Role, Property and Concept definitions. As in computer programming, context namespaces are intended to allow multiple knowledge bases to reside in the same physical database. (from Apelon)_Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132898844v1 Specimen Life Sciences Identifier Organizational Unit java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:Organizational unit like a laboratory, institute or consortium._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132553321v1 Specimen Lineage Text TypeSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Descent in a line from a common progenitor or source._Text; the words of something written._Type; a subdivision of a particular kind of thing.Derived | Aliquot | New
Specimen - 22416132897710v1% LymphocytesSpecimen Lymphocyte Infiltration Percentage ValueNumeric value to represent the percentage of infiltration by lymphocytes in a solid tissue normal sample or specimen. 
Specimen - 22416132897716v1% MacrophagesSpecimen Macrophage Infiltration Percentage ValueNumeric value to represent the percentage of infiltration by monocytes in a solid tissue normal sample or specimen. 
Specimen - 22416132883940v1Block/Slides TypeSpecimen Malignant Neoplasm Submission Gastrointestinal Typethe type of gastrointestinal tumor specimen submitted.20-30 unstained slides | 2mm core biopsy | One representative block
Specimen - 22416132764923v1Was research tumor submittedSpecimen Malignant Neoplasm Submission Ind-2the yes/no indicator whether the malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues, was submitted for research purposes.No | Yes
Specimen - 22416132529079v1 Specimen Material Type java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The tangible substance that goes into the makeup of a physical object.:Something distinguishable as an identifiable class based on common qualities._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132008274v2Medial-lateral specimen dimension (cm)Specimen Measurement X Medial Lateral Centimeter MeasurementNumeric value to represent the medial-lateral size of a specimen. 
Specimen - 22416132773217v1 Specimen Modified By java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Indicates the person or authoritative body who changed an item._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132475627v1 Specimen NCI Metathesaurus Code Set java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A concept unique identifier within the NCI Enterprise Vocabulary Service's NCI Metathesaurus.:A group of things of the same kind that belong together and are so used._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132519439v1Specimen nameSpecimen Name java.lang.StringThe name or label that is assigned to the specimen to identify it; for example, Part A or Block 31c. 
Specimen - 22416132679827v1NSABP Specimen ID for Central TestingSpecimen National Surgical Adjuvant Breast and Bowel Project Central Laboratory Identifier Numberthe unique identifier for a specimen, a bit of tissue or blood or urine that is taken or used for research purposes, assigned by the National Surgical Adjuvant Breast and Bowel Project (NSABP), a clinical trials cooperative group supported by the NCI, central laboratory, a laboratory delivering the data for a particular study. 
Specimen - 22416132897730v1% NeutrophilsSpecimen Neutrophil Infiltration Percentage ValueNumeric value to represent the percentage of infiltration by neutrophils in a solid tissue normal sample or specimen. 
Specimen - 22416132739418v1If not collected, specify reasonSpecimen Not Collected Reasonthe reason a tissue specimen taken for research or analysis was not collected.Institutional error | Patient refusal | Administrative error | Selection error | Other
Specimen - 22416132547633v1Reason Specimens Not CollectedSpecimen Not Collected Reason TextA free text field used to describe the reason a specimen was not collected. 
Specimen - 22416132739424v1Other, specifySpecimen Not Collected Specifythe free-text field to specify the reason a tissue specimen taken for research or analysis was not collected. 
Specimen - 22416132416947v1No specimen receivedSpecimen Not Received Textthe check box to indicator if a specimen was not received. 
Specimen - 22416133022256v1Was sample obtainedSpecimen Obtain Ind-2the yes/no indicator related to a part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis being obtained.No | Yes
Specimen - 22416132241638v1Specimen obtained atSpecimen Obtained Period Typethe period that a specimen was obtained or collected.Definitive surgery | Baseline | Other | Interim/Surgery
Specimen - 22416132830295v1 Specimen Original Quantity java.lang.DoubleSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Preceding all others in time or being as first made or performed.:How much there is of something that you can measure; the total amount or number._Generic value domain for a primitive java datatype that is a Double-precision floating point number (64-bit IEEE 7540). 
Specimen - 22416132856606v1Specify numberSpecimen Other Submission Countthe quantity as related to other specimen being submitted. 
Specimen - 22416132856608v1Other, specifySpecimen Other Submission Specifythe free-text field to specify the type of other specimen being submitted. 
Specimen - 22416132475624v1 Specimen Parent Identifier java.lang.LongSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A mother or a father; an immediate progenitor.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). 
Specimen - 22416132771361v1 Specimen Part Life Sciences Identifier Entity Identifier java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:An independently existing thing (living or nonliving).:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132771360v1 Specimen Part Life Sciences Identifier Namespace java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:In general, a namespace is an abstract container, which is or could be filled by names, or technical terms, or words, and these represent or stand for real-world things. A description logic terminology namespace is a collection of Kind, Role, Property and Concept definitions. As in computer programming, context namespaces are intended to allow multiple knowledge bases to reside in the same physical database. (from Apelon)_Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132771359v1 Specimen Part Life Sciences Identifier Organizational Unit java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A unique identifier meant to be a common way to identify and access biologically significant data, whether that data is stored in files, relational databases, in applications, or in internal or public data sources. Every LSID consists of up to five parts: the Network Identifier (NID); the root DNS name of the issuing authority; the namespace chosen by the issuing authority; the object id unique in that namespace; and an optional revision id for storing versioning information. Each part is separated by a colon.:Organizational unit like a laboratory, institute or consortium._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132475626v1 Specimen Part Sequence Number java.lang.IntegerSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._One of the portions into which something is regarded as divided and which together constitute a whole.:A serial arrangement in which things follow in logical order or a recurrent pattern.:A numeral or string of numerals expressing value, quantity, or identification._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement). 
Specimen - 22416132553322v1 Specimen Pathology Finding Status Specimen Histopathological Text TypeSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The medical science, and specialty practice, concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes. Informally used to mean the result of such an examination.:The result of an examination or inquiry.:A condition or state at a particular time._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes._A branch of pathology concerned with the tissue changes characteristic of disease._Text; the words of something written._Type; a subdivision of a particular kind of thing.Not Specified | Non-Malignant | Malignant, Invasive | Malignant, Pre-Invasive | Non-Malignant, Diseased | Pre-Malignant | Malignant | Metastatic
Specimen - 22416132475625v1 Specimen Pathology Report Identifier java.lang.LongSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A report that provides a description of the gross and microscopic examination of the specimen and is used to make a diagnosis and to determine treatment. It defines which structures and organs of the body are involved by the tumor, verifies the primary site of the cancer and describes the extent to which it has spread.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). 
Specimen - 22416132897683v1% Tumor EdgeSpecimen Perimeter Tumor Percentage ValueNumeric value to represent the percentage of the perimeter of a specimen/sample that is tumor. 
Specimen - 22416132711766v1 Specimen Pharmacologic Substance Name java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._An active natural, synthetic or semi-synthetic ingredient including endogenous body substance that is intended to furnish pharmacological activity or other direct effect in the diagnosis, cure, mitigation, treatment, or prevention of disease or to affect the structure or any function of the human body, but does not include intermediates used in the synthesis of such ingredient (21 CFR 314.3(b)).:The words or language units by which a thing is known._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132915879v1Date PK PerformedSpecimen Plasma Pharmacokinetic Study Collected Datethe date a pharmacokinetic analysis was performed. 
Specimen - 22416132389515v1Pharmacokinetics plasma sampleSpecimen Plasma Pharmacokinetic Study Collected Typethe type or amount of plasma, the noncellular portion of the circulating blood, collected for examination or diagnosis using the process by which a drug is absorbed, distributed, metabolized, and eliminated.10 cc sample for estradiol | 15 cc sample
Specimen - 224161364768v3Specimen State at Time of MeasurementSpecimen Preparation Method Texta text field to describe the process to make a sample of tissue or blood ready for (transport or) use for research (esp. relevant for tissue changes due to freezing and fixatives). 
Specimen - 22416132842569v1Representative primary tumor from lymph nodeSpecimen Primary Malignant Neoplasm Lymph Node Submission Typethe type of submission of a tissue specimen taken from the lymph node, a rounded mass of lymphatic tissue that is surrounded by a capsule of connective tissue, containing a sample of the primary malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues.Paraffin block | Unstained slide
Specimen - 22416132842562v1Representative primary tumor from prostateSpecimen Primary Malignant Neoplasm Prostate Gland Submission Typethe type of submission of a tissue specimen taken from the prostate, walnut shaped accessory sex gland of the male reproductive system that secretes a fluid which is part of the semen, containing a sample of the primary malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues.Paraffin block | Unstained slide
Specimen - 22416132842566v1Representative primary tumor from seminal vesicleSpecimen Primary Malignant Neoplasm Seminal Vesicle Submission Typethe type of submission of a tissue specimen taken from the seminal vesicle, one of the two paired glands in the male genitourinary system, posterior to the bladder and superior to the prostate gland, that produces fructose-rich seminal fluid which is a component of semen, containing a sample of the primary malignant neoplasm, a tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues.Paraffin block | Unstained slide
Specimen - 22416132773218v1 Specimen Received Date and Time java.util.DateSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._To have taken, accepted, or gotten something offered.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. 
Specimen - 22416132501670v1Date Specimen Received From PathologySpecimen Received From Pathology DateThe date on which a bit of tissue or blood or urine that is taken or used for research purposes and acquired from pathology which concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes. 
Specimen - 22416132519440v1 Specimen Registration Date and Time java.util.DateSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The act of enrolling; an entry in a register.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. 
Specimen - 22416132670924v1Did patient consent to DNA specimen use in future research studies?Specimen Related Genetic Future Research Consent Ind-2the yes/no indicator that asks whether the patient"s initial consent was given for use of a specimen use for future genetic research.No | Yes
Specimen - 22416132647130v1Date of consent [for] pharmacogenetic researchSpecimen Related Genetic Research Consent Datethe date relating to consent and related genetic research using a specimen. 
Specimen - 22416132556199v1Patient's initial consent given for specimen use for genetic research relating to the study treatmentSpecimen Related Genetic Research Consent Ind-2the yes/no indicator relating to consent and the related genetic research using a specimen.No | Yes
Specimen - 22416132003973v3Is extra material stored?Specimen Remaining Storage Ind-3the yes/no/unknown indicator whether there was storage of the remaining preparation of tissue or bodily fluid taken for examination or diagnosis.No | Yes | Unknown
Specimen - 22416132003974v3Extra material typeSpecimen Remaining Storage Namethe name of the additional or extra material (specimen) collected or stored. 
Specimen - 22416132519441v1 Specimen Removed Date and Time java.util.DateSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Taken out of, separated from, or eliminated.:An expression of both date and time that an event has happened or will happened._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. 
Specimen - 22416132501665v1Date Specimen Requested From PathologySpecimen Requested From Pathology DateThe date on which a bit of tissue or blood or urine that is taken or used for research purposes and requested from pathology which concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes. 
Specimen - 22416133562987v1Mandatory or optionalSpecimen Requirement Collection Statusthe status related to whether a specimen collection is considered mandatory or optional per protocol.Optional | Mandatory
Specimen - 224161365086v3Grams ResectedSpecimen Resection Weight Measurementa numeric measure in grams for the weight of a sample of tissue or body fluid collected during an operative procedure. 
Specimen - 22416132513678v1 Specimen Second Dimension Position java.lang.IntegerSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Coming next after the first in position in space or time or degree or magnitude.:The magnitude of something in a particular direction, especially length or width or height.:The particular portion of space occupied by a physical object._Generic value domain for a primitive java dataype that is an Integer (32-bit two's complement). 
Specimen - 22416132503758v1Date Specimen Shipped To CCMOSpecimen Shipped To Constortia Contract Management Office DateThe date on which the specimen was shipped to the consortia contract management office (CCMO). 
Specimen - 22416132006898v1.1Courier Tracking NumberSpecimen Shipping Company Identifier Numberthe identifier number for the specimen used by the courier. 
Specimen - 22416132190839v1Quantity of items shippedSpecimen Shipping Numberthe number of specimens shipped. 
Specimen - 22416133334700v1Quantity Items ReceivedSpecimen Shipping Receive NumberA part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis._The act or business of transporting goods._To take, accept, or got something offered._Number 
Specimen - 22416132190555v1Other, specifySpecimen Shipping Specifythe specified specimen shipping type. 
Specimen - 22416132190553v1.1Items shippedSpecimen Shipping Specimen Shipping Typeinformation related to The act or business of transporting a tissue specimen._the type of shipment method for a specimen.Scrolls | Cores | OCT | Slides | Snap Frozen | Block | Other
Specimen - 22416132548346v1Total number of specimen slicesSpecimen Slice CountValue to identify the number of 1 cm slices made from a specimen. 
Specimen - 22416132548354v1Specimen sliceSpecimen Slice Dimensionality NameText term to represent the dimensionality by which a specimen slice can be identified.Medial most specimen slice | Lateral most specimen slice | Inferior most specimen slice | Superior most specimen slice | Anterior most specimen slice | Posterior most specimen slice
Specimen - 22416132548350v1How was specimen sliced?Specimen Slice Dimensionality TypeTypes of specimens based on slice dimensionality.med/lat | sup/inf | ant/post
Specimen - 22416132548356v1Slice #Specimen Slice IdentifierUnique identifier for a specimen slice referenced by the dimensional cutting pattern. 
Specimen - 22416132711769v1 Specimen Specimen Date java.util.DateSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.:The particular day, month and year an event has happened or will happen._Generic value domain for a java datatype that represents a specific instant in time, with millisecond precision. 
Specimen - 22416132608232v1 Specimen Specimen Identifier java.lang.LongSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). 
Specimen - 22416132529080v1 Specimen Specimen Identifier java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Specimen; a bit of tissue or blood or urine that is taken or used for research purposes.:One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132608233v1 Specimen Specimen Type Code java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A part of a thing, or of several things, taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.:Something distinguishable as an identifiable class based on common qualities.:A system, often of numbered categories, for representation of data._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132178270v1Preservative usedSpecimen Sputum Preservative CodeType of preservative used for sputum specimens.9 | 7 | 1 | 2 | 3
Specimen - 22416132178198v1Preservative used, specifySpecimen Sputum Preservative Other TextType of preservative used for sputum specimens that does not appear in the pick-list. 
Specimen - 22416132773219v1 Specimen Status java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A condition or state at a particular time._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416133664659v1Specimen TypeSpecimen Sun Exposure TypeThe value that describes the skin specimen type.Non-sun-exposed skin | Sun-protected skin | Sun-exposed skin
Specimen - 22416132008275v2Superio-inferior specimen dimension (cm)Specimen Superior Inferior Centimeter MeasurementNumeric value to represent the superior-inferior measurement of a specimen, a bit of tissue or blood or urine that is taken or used for research purposes. 
Specimen - 22416132188954v1Method of extractionSpecimen Surgical Procedure Techniqueinformation about the method of extraction of a tissue specimen.Mastectomy | Axillary dissection | Re-excision | General surgery, NOS | Sentinel node dissection | Lumpectomy | Biopsy
Specimen - 22416132178259v1Tissue laterality:Specimen Tissue Laterality CodeSide of the body tissue specimen was taken from.9 | 1 | 2 | 8
Specimen - 22416132842654v1Are TMA samples being submitted at prostatectomySpecimen Tissue Microarray Prostatectomy Submission Ind-2the yes/no indicator whether there was submission of tissue microarrays, a device for use in high-throughput molecular analysis/screening of clinical tissue specimens that spatially arrange 500-1000 tumor biopsies or other tissue onto a microarray block, which is then sliced into sections for probing DNA, RNA or protein targets to provide coincident analysis of all specimens in the array, following prostatectomy, an operation to remove part or all of the prostate.No | Yes
Specimen - 22416132842658v1Sample typeSpecimen Tissue Microarray Prostatectomy Submission Typethe type of specimen submitted for use on tissue microarrays, a device for use in high-throughput molecular analysis/screening of clinical tissue specimens that spatially arrange 500-1000 tumor biopsies or other tissue onto a microarray block, which is then sliced into sections for probing DNA, RNA or protein targets to provide coincident analysis of all specimens in the array, following prostatectomy, an operation to remove part or all of the prostate.Cores | Parraffin block
Specimen - 22416133005019v1Total VolumeSpecimen Total Volume Amount Milliliter NumberNumeric value for the total amount of sample or specimen, measured in milliliters (mL). 
Specimen - 22416132519443v1 Specimen Tracer java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A substance that is identifiable by virtue of its radioactive signature, color, or other distinguishing physical property, such as a dye, radioactive isotope, or inert chemical, that is introduced into a biological or mechanical system and can be followed_Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416133623470v1Date Specimen TransferredSpecimen Transfer DateThe date the specimen was moved from one location to another. 
Specimen - 22416133649977v1Was the specimen transferred?Specimen Transfer Yes No IndicatorThe response to a question that asks if a specimen was transferred.No | Yes
Specimen - 22416132248183v1Shipment typeSpecimen Transport Description Typethe type of shipment method used in the transport of specimens.Dry ice | Wetpack | Cold pack
Specimen - 22416132648061v1Was a research Snap Frozen specimen obtainedSpecimen Transport Frozen Laboratory Ind-2a yes/no question relating to frozen specimen transport to a lab.No | Yes
Specimen - 22416132405485v1Specify reasonSpecimen Transport Frozen Laboratory Reasonthe reason a sample was shipped using dry ice.Sample shipped with other samples | Sample shipped after being stored | Buccal sample | Other
Specimen - 22416132405488v1Other, specifySpecimen Transport Frozen Laboratory Specifythe free text field to specify the other reason a sample was shipped using dry ice. 
Specimen - 22416132897693v1% Central CoreSpecimen Tumor Core Percentage ValueNumeric value to represent the percentage of epicenter of the tumor in a specimen. 
Specimen - 22416132791170v1Specimen TypeSpecimen TypeThe type of specimen taken to demonstrate or to determine the character of the whole, e.g. a substance, or portion of material obtained for use in testing, examination, or study; particularly, a preparation of tissue or bodily fluid taken for examination or diagnosis.Normal mucosa | ACF | Colon Tissue | Whole Blood
Specimen - 22416133111302v1Sample TypeSpecimen Type Collection Biospecimen TypeText term to describe the source of a biospecimen used for a laboratory test.Feces | Skin | Ascites | Other | Bone Marrow | CSF | Serum | Tumor | Buccal Mucosa | Urine | Pleural Fluid | Normal Tissue | Cell | Blood | Saliva | Plasma | PBMCs | None | Unspecified | Tissue
Specimen - 22416132513675v1 Specimen Type Collection Text TypeSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A subdivision of a particular kind of thing._Text; the words of something written._Type; a subdivision of a particular kind of thing.DNA | RNA | RNA, poly-A enriched | cDNA | Protein | Not Specified | Whole Blood | Whole Bone Marrow | Bone Marrow Plasma | Cerebrospinal Fluid | Lavage | Pericardial Fluid | Synovial Fluid | Amniotic Fluid | Sweat | Milk | Gastric Fluid | Bile | Feces | Fresh Tissue | Frozen Tissue Slide | Fixed Tissue | Fixed Tissue Slide | Cryopreserved Cells | Body Cavity Fluid | Vitreous Fluid | RNA, cytoplasmic | RNA, nuclear | Fixed Tissue Block | Frozen Tissue | Frozen Tissue Block | Fixed Cell Block | Frozen Cell Block | Frozen Cell Pellet | Microsessected | Serum | Sputum | Urine | Plasma | Slide | Saliva
Specimen - 22416132715527v1 Specimen Unique Identifier HL7.InstanceIdentifierSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A set of characters used as a code that is unique in the context or the system for which it is created. It serves as a means of identification and reference (often instead of a name) for an entity, person, thing, function, procedure, activity, variable, or a body of data._Generic value domain for HL7 instance identifiers that uniquely identify a thing or object. 
Specimen - 22416132731351v1 Specimen Unique Identifier java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A set of characters used as a code that is unique in the context or the system for which it is created. It serves as a means of identification and reference (often instead of a name) for an entity, person, thing, function, procedure, activity, variable, or a body of data._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132608235v1 Specimen Unit of Volume java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._An indication of the type of unit of measure being used to express a volume._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132475623v1 Specimen Universally Unique Identifier java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A 128 bit identifier. Depending on the mechanism used to generate it, it is either guaranteed to be different from all other UUIDs/GUIDs generated until 3400 AD or extremely likely to be different. Its relatively small size lends itself well to sorting, ordering, and hashing of all sorts, storing in databases, simple allocation, and ease of programming in general._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416133101110v1 Specimen Use java.lang.StringSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Use; put into service; make work or employ (something) for a particular purpose or for its inherent or natural purpose._Generic value domain for a java datatype that is a class that represents character strings. 
Specimen - 22416132475622v1 Specimen Version java.lang.LongSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._A form or variant of a type or original._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). 
Specimen - 22416132222486v1Approximate volume of sampleSpecimen Vial Tissue Collection Received Average Volume Measurementthe volume, in milliliters, a vial or collection tube containing a bit of tissue or blood or urine being received and placed into a repository or tissue bank. 
Specimen - 22416132006071v3Average Volume Per TubeSpecimen Vial Tissue Collection Submission Average Volume Measurementthe average volume, in milliliters, of a vial or collection tube containing a bit of tissue or blood or urine being submitted to a repository or tissue bank. 
Specimen - 22416132006070v3Number of Tubes BankedSpecimen Vial Tissue Collection Submission Countthe numeric count of vials or collection tubes containing a bit of tissue or blood or urine being submitted or placed into a repository or tissue bank. 
Specimen - 22416132423043v1 Specimen Visible Flag java.lang.BooleanSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._Perceptible especially by the eye; open to easy view.:An indicator that can be set or unset in order to signal whether a particular condition is true._Value Domain for java language Boolean datatype 
Specimen - 22416132608234v1 Specimen Volume java.lang.LongSpecimen; a bit of tissue or blood or urine that is taken or used for research purposes._The amount of three dimensional space occupied by an object or the capacity of a space or container._Generic value domain for a primitive java dataype that is a long integer (64-bit two's complement). 
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