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The AIM Template Service (ATS) is a web service application that makes it possible for you to upload (publish) and download AIM templates created using a caBIG® Annotation and Image Markup (AIM) tool such as AIM Template Builder. You can import AIM template files to AIM Template Builder and modify them there. You can then use AIM Template Builder to export the template(s) to an AIM template file. If you want to share that file, you can upload it to ATS.
AIM templates contain a set of well-defined questions and answer choices to facilitate collecting information for a particular purpose, such as The Cancer Genome Atlas Glioblastoma (TCGA GBM) study. AIM templates ensure that users can annotate medical images using a controlled vocabulary and standard template. This results in simple and constrained annotations that are reproducible and consistent.
A valid AIM template is validated by AIM schemas (version 1, revision 18/19/23).
Refer to the AIM Template Service documentation for more information about ATS features.
Download the Berkley DB XML version suitable for your platform from
http://www.oracle.com/technetwork/database/berkeleydb/downloads/index.html
The version used for this installation guide is Berkley DB XML 2.5.16. |
sh buildall.sh --enable-java
.port
= 4433 (AIM template service server port)dbpath
= C:\ATS-1.1\xmldb (Path to a location where you want to store ATS data)CaGridSecurityUrl
= (URL for STS authentication service)keystorepath
= (path to the keystore) (optional. required if running over https)keystorename
= (name of the keystore file) (optional. required if running over https)dbpath
specified in serverConfig.txtsdbxml
. This opens the XML DB shell.createContainer ats_prod.dbxml
. This creates an empty AIM Template Service database.Type %JAVA_HOME%\bin\java” -Djavax.net.ssl.trustStore=certificates/stsClient.jks -Djavax.net.ssl.trustStorePassword=yearkiwi -jar AimTemplateService.jar
Set the JAVA_HOME environment variable to point to your JDK location. |
Unix
Open a terminal window.
Navigate to the ATS-1.1 folder.
Type java -Djava.library.path=/home/john /dbxml-2.5.16/install/lib/ -Djavax.net.ssl.trustStore=certificate/stsClient.jks -Djavax.net.ssl.trustStorePassword=yearkiwi -jar AimTemplateService.jar
The java.library.path value depends on where you have installed Oracle DB XML. |
Watch console output for errors and warnings.