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This section describes caNanoLab features associated with caNanoLab's publication features. Topics discussed in this section include:
When you click the Publications option on the caNanoLab menu bar, the Manage Publications home page appears. The panel on the page provides the following options:
Once a publication is submitted and associated with one or more specific samples, when the sample is opened in caNanoLab, the associated publications are listed on the Publication All tab. Where appropriate, the publication list includes hypertext links so you can open the publication(s).
If you work from the Publications menu option discussed in this section, you can associate multiple samples with a publication. If you add publications to an open sample, you can use the copy feature to associate the publication with other samples. |
This help topic opens from the Update Publication page as well as well as from the Submit Publication page. For more information about the Update Publication page, see 6 - Managing Publications in caNanoLab 2.1 DRAFT. |
The Submit Publication feature allows you to identify a publication and associate it with one or more samples.
To define a sample publication, follow these steps:
When no sample is selected:
From within an open sample:
Select or enter the appropriate information in the text fields and drop-down lists. Fields are described in the following table. Fields may change, depending upon your launching point and your selection of Publication Type. Asterisks indicate required fields.
By default, all fields are blank. |
Sample Publication Criteria | Description |
---|---|
Publication Type* | |
Publication Status* | |
Research Category* | |
PubMed ID | Enter the PubMed ID (click the Click to look up PubMed Identifier hypertext link where you can search for the ID). |
Enter the digital object ID, if you know it. | |
Title | Enter the title. (See PubMed ID description for how to auto-populate this field) |
Journal | Enter the journal. (See PubMed ID description for how to auto-populate this field). |
Year of Publication/Volume | Enter the year of the publication and the volume, where available. |
Start Page/End Page | Enter the page range for the publication. |
Authors | Enter the name of one author. (See PubMed ID description for how to auto-populate this field). Click Add Author to add additional authors. |
Keywords | Enter a term that can be used in a search query to find the publication. |
Description | Enter an appropriate description for the publication. |
Upload File | Click the Browse button to navigate to the publication to be associated with the sample, or enter the URL where the publication is located. |
Sample Name* | Enter the exact or partial name and click the search icon ( ) to find the names of samples in caNanoLab. Select one or more sample sample names to be associated with the publication. Notes:
|
Copy | This section replaces the Sample Name field if you are submitting a publication from within an open sample. If that is the case, you can use this copy feature to associate the publication with other samples to which you have access. |
Access to the Publication | Access to the Publication can be assigned to either Collaboration Groups or Users. Click the search icon to select select from collaboration groups to which you have read access. When you submit new data into the system, by default, the person submitting the data and anybody in the Curator group automatically have CURD (create, update, read, delete) access to the data. Other access must be manually assigned through this function. |
You can edit a publication using the following techniques:
You can access the Update Publication page after logging into caNanoLab or you can access publicly-available sample publication results from the Login page. You can edit a publication only if you are logged in as a curator. |
The Publication Update page opens when you click the Edit link corresponding to a publication listed in 6 - Managing Publications in caNanoLab 2.1 DRAFT. The page displays all of the information for a Publication that was entered when the Publication was created in caNanoLab (Submitting a Protocol). With appropriate permissions, you can edit information.
Publication criteria may change, depending upon the Publication Type of the selection. |
Details are described in the following table. An asterisk indicates a required field. Click Update when you are done editing the Protocol. To disregard the changes, click Reset.
Publication Criteria | Description |
---|---|
Publication Type* | |
Publication Status* | |
PubMed ID | PubMed ID (can be a hypertext link). |
Appropriate DOI | |
Title | Publication title. (See PubMed ID description for how to auto-populate this field) |
Journal | Journal in which publication occurs. |
Year of Publication | Year of the publication. |
Volume | Volume of the publication |
Start/End Page | Page range for the publication |
Authors | Publication author:
|
Keywords | Term that can be used in a search query to find the publication. Enter one keyword per line. |
Description | Description for the publication. |
Research Category* | |
Upload File | Click the Browse button to navigate to the publication to be associated with the sample, or enter the URL where the publication is located. |
Sample Name* | One or more sample names to be associated with the publication. |
Access to the Publication | Lists the Group Name that has access to the Publication:
Lists the type of Access that the Group has for the Publication:
|
To change the group access to the Publication:
If a publication is uploaded, with proper permissions you can download the publication. If the Download Publication link is available in the Download Publication field, then that means you can download it.
This action deletes the publication from the caNanoLab database, executed behind the scenes at a scheduled time. |
To delete a publication, perform a search, and click the Edit link in the first column of the the 6 - Managing Publications in caNanoLab 2.1 DRAFT page. The Update Publication page opens. From the Update Publication page, click the Delete button in the lower left of the window. Confirm the deletion.
When you are in the process of adding a publication to a sample, on the Publication page you can copy that publication to other caNanoLab samples that have the same point of contact.
To delete a publication for a selected sample, follow these steps:
This only deletes the publication(s) for the selected sample. If it (they) has (have) been copied for other particles, it will not be deleted. |
If buttons described in this section do not display, then you can assume that you have read-only access to the data. |
You can access this page after logging into caNanoLab or you can access publicly available sample publications from the Login page. |
The Search Publications feature looks for submitted existing publications or Publications can be associated with one or more samples.
To launch a search for a specific publication, follow these steps:
Select or enter the appropriate information in the text fields and drop-down lists. Fields are described in the following table. Asterisks indicate required fields.
When defining search criteria, there are no "required" fields. You can add only those parameters that you consider essential to the search. Add an asterisk for searching wildcards.
If you click the Search button having defined no parameters, all of the caNanoLab publications will be listed in the Search Results. |
Publication Search Options | Description |
---|---|
Publication Type | |
Research Category | |
PubMed ID | Enter the PubMed ID, if known. |
Enter the name of the digital object ID, if you know it. | |
Publication Title | Enter the name of the document. |
Authors | Enter the name(s) of the authors |
Keywords | Enter a logical term that can be used to find the publication. |
Sample Name | Enter the name of the sample. |
Composition Nanomaterial Entity | Nanomaterial Entity Select from the drop-down list the nanoparticle category to which the sample targeted by the search belongs. Example: Dendrimer Composition Functionalizing Entity Select from the drop-down list the functionalizing category to which the sample targeted by the search belongs. Function |
For information about search results, see 6 - Managing Publications in caNanoLab 2.1 DRAFT.
You can access this page after logging into caNanoLab or you can access publicly available sample publication results from the Login page. |
Publications Search Results display in the browser window in table format, sorted by creation date. Column headings are appropriate for the publication(s) for which you searched; cell entries were defined when the report was submitted. Columns are sortable by Creation Date. Column headings are described in the following table.
If you click the Search button having defined no parameters, all of the caNanoLab sample publications will display in the search results. |
The following fields are listed in the search results. To return to the Search page, click the Back ( ) button not the Browser button..
Publications Search Results Columns | Description | ||
---|---|---|---|
Action | Click Edit in the first column to display the Publication on the 6 - Managing Publications in caNanoLab 2.1 DRAFT.
Click the Add to Favorites link to add a bookmark for the Publication on your Favorites tab. Success appears in the column when the Publication is successfully added.
| ||
Bibliography Information | Lists bibliography information about the publication and provides a link to the publication abstract at PubMed.gov. | ||
Publication Type | The publication category you selected when you created the report. | ||
Research Category | The research category you selected when you created the document. (Publications only) | ||
Associated Sample Names | Names of sample(s) associated with the publication | ||
Description | Click View to display a popup with a complete description of the Publication. | ||
Publication Status | |||
Created Date | Date the publication was submitted |
For any entry, click on the hypertext link in the Title column (first) to open the associated file.
To launch a search for samples by publication, follow these steps:
Specify the Type of sample ID, PubMed or DOI.
Enter the ID number.
To clear the fields, click Reset.
Click Search.
If you click the Search button having defined no parameters, all of the caNanoLab publications will be listed in the Search Results. |
You can access this page after logging into caNanoLab or you can access publicly-available sample publication results from the Login page. |
The following fields are listed in the search results. To return to the Search page, click the Back ( ) button not the Browser button.
Publications Search Results Columns | Description |
---|---|
Publication REF | Click the hypertext link to open the PubMed.gov page for that Publication. |
Authors | The author(s) of the publication. |
Title | The title of the publication. |
Sample Composition | Click the link to open the caNanoLab Sample Composition form. |
Sample Characterization | Click the link to the open the caNanoLab Sample Characterization form. |
Journal | The journal where the publication was published. |
Year | The year that the journal was published. |
Vol(lss)Pg | The volume and page number in the journal where the publication was published. |
For any entry, click on the hypertext link in the Title column (first) to open the associated file.
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