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This section describes caNanoLab features associated with caNanoLab's publication features. Topics discussed in this section include:
When you click the Publications option on the caNanoLab menu bar, the Manage Publications home page appears. The panel on the page provides the following options:
Once a publication is submitted and associated with one or more specific samples, when the sample is opened in caNanoLab, the associated publications are listed on the Publication All tab. Where appropriate, the publication list includes hypertext links so you can open the publication(s).
If you work from the Publications menu option discussed in this section, you can associate multiple samples with a publication. If you add publications to an open sample, you can use the copy feature to associate the publication with other samples. |
The Submit Publication feature allows you to identify a publication and associate it with one or more samples.
To define a sample publication:
When no sample is selected:
From within an open sample:
The following table lists and describes each field. Select or enter the appropriate information in the text fields and drop-down lists.
By default, all fields are blank. |
Fields may change, depending upon your launching point and your selection of Publication Type. Asterisks indicate required fields.
Sample Publication Criteria | Description |
---|---|
Publication Type* | |
Publication Status* | |
Title* | Enter the title. (See PubMed ID description for how to auto-populate this field) |
Year of Publication | The year that the publication was published. |
Authors | Enter the name of one author. Enter one author on each line. |
Keywords | Enter a term that can be used in a search query to find the publication. Enter one keyword on each line. |
Description | Description for the publication. |
Research Category* | |
Upload File | Click the Browse button to navigate to the publication to be associated with the sample, or enter the URL where the publication is located. |
Sample Name* | Enter one Sample Name per line. Add information about Search and Select. |
Access to Publication | For more information, see 6 - Managing Publications in caNanoLab 2.1 DRAFT. |
To clear the fields and start again, click Reset.
You can edit a publication using the following techniques:
You can access the Update Publication page after logging into caNanoLab or you can access publicly-available sample publication results from the Login page. You can edit a publication only if you are logged in as a curator. |
The Publication Update page opens when you click the Edit link corresponding to a publication listed in 6 - Managing Publications in caNanoLab 2.1 DRAFT. The page displays all of the information for a Publication that was entered when the Publication was created in caNanoLab (Submitting a Protocol). With appropriate permissions, you can edit information.
Publication criteria may change, depending upon the Publication Type of the selection. |
The following table lists and describes the fields. An asterisk indicates a required field. Click Update when you are done editing the Protocol. To disregard the changes, click Reset.
Publication Criteria | Description |
---|---|
Publication Type* | |
Publication Status* | |
PubMed ID | PubMed ID (can be a hypertext link). |
Appropriate DOI. | |
Publication Title | Select contains or equals and enter a partial or complete Publication Title that contains or is the same as what you searching for. |
Journal | Journal in which publication occurs. |
Year of Publication | Year of the publication. |
Volume | Volume of the publication |
Start/End Page | Page range for the publication |
Authors | Enter one author per line. |
Keywords | Term that can be used in a search query to find the publication. Enter one keyword per line. |
Description | Description for the publication. |
Research Category* | |
Upload File | Click the Browse button to navigate to the publication to be associated with the sample, or enter the URL where the publication is located. |
Sample Name* | One or more sample names to be associated with the publication. |
Access to the Publication | Lists the Group Name that has access to the Publication:
Lists the type of Access that the Group has for the Publication:
|
To change the group access to the Publication:
If a publication is uploaded, with proper permissions you can download the publication. If the Download Publication link is available in the Download Publication field, then that means you can download it.
This action deletes the publication from the caNanoLab database, executed behind the scenes at a scheduled time. |
To delete a publication, perform a search, and click the Edit link in the first column of the the 6 - Managing Publications in caNanoLab 2.1 DRAFT page. The Update Publication page opens. From the Update Publication page, click the Delete button in the lower left of the window. Confirm the deletion.
When you are in the process of adding a publication to a sample, on the Publication page you can copy that publication to other caNanoLab samples that have the same point of contact.
To delete a publication for a selected sample, follow these steps:
This only deletes the publication(s) for the selected sample. If it (they) has (have) been copied for other particles, it will not be deleted. |
If buttons described in this section do not display, then you can assume that you have read-only access to the data. |
You can access this page after logging into caNanoLab or you can access publicly available sample publications from the Login page. |
The Search Publications feature looks for submitted existing publications or Publications can be associated with one or more samples.
To launch a search for a specific publication, follow these steps:
Click the Publications caNanoLab menu option. On the Manage Publication home page, click the Search Existing Publications link. This opens the Search Publications form.
When defining search criteria, there are no "required" fields. You can add only those parameters that you consider essential to the search. Add an asterisk for searching wildcards. If you do not define any search criteria, caNanoLab will list all publications in the search results. |
The following table lists and describes the fields. Select or enter the appropriate information in the text fields and drop-down lists. Asterisks indicate required fields.
Publication Search Options | Description |
---|---|
Publication Type | |
Research Category | |
PubMed ID | Enter the PubMed ID, if known. |
Enter the name of the digital object ID, if known. | |
Publication Title | Select contains or equals to enter a partial or complete Publication Title that contains or is the same as the name of the document. |
Authors | Enter the name(s) of the authors. Enter one author per line. |
Keywords | Enter a logical term that can be used to find the publication. Enter one term per line. |
Sample Name | There are two ways to search by Sample Name. You can use one way or use them in combination. Select either contains or equals from the drop-down and enter a partial or complete Sample Name that contains or is the same as what you are searching for. |
Composition | Nanomaterial Entity Select from the drop-down list the nanoparticle category to which the sample targeted by the search belongs. Example: Dendrimer Functionalizing Entity Select from the drop-down list the functionalizing category to which the sample targeted by the search belongs. Function |
For information about search results, see 6 - Managing Publications in caNanoLab 2.1 DRAFT.
You can access this page after logging into caNanoLab or you can access publicly available sample publication results from the Login page. |
Publications Search Results display in the browser window in table format, sorted by creation date. Column headings are appropriate for the publication(s) for which you searched; cell entries were defined when the report was submitted. Columns are sortable by Creation Date. Column headings are described in the following table.
If you click the Search button having defined no parameters, all of the caNanoLab sample publications will display in the search results. |
The following fields are listed in the search results. To return to the Search page, click the Back ( ) button not the Browser button..
Publications Search Results Columns | Description | ||
---|---|---|---|
Action | Click Edit in the first column to display the Publication on the 6 - Managing Publications in caNanoLab 2.1 DRAFT.
Click the Add to Favorites link to add a bookmark for the Publication on your Favorites tab. Success appears in the column when the Publication is successfully added.
| ||
Bibliography Information | Lists bibliography information about the publication and provides a link to the publication abstract at PubMed.gov. | ||
Publication Type | The publication category you selected when you created the report. | ||
Research Category | The research category you selected when you created the document. (Publications only) | ||
Associated Sample Names | Names of sample(s) associated with the publication | ||
Description | Click View to display a popup with a complete description of the Publication. | ||
Publication Status | |||
Created Date | Date the publication was submitted |
For any entry, click on the hypertext link in the Title column (first) to open the associated file.
To launch a search for samples by publication, follow these steps:
Specify the Type of sample ID, PubMed or DOI.
Enter the ID number.
To clear the fields, click Reset.
Click Search.
If you click the Search button having defined no parameters, all of the caNanoLab publications will be listed in the Search Results. |
You can access this page after logging into caNanoLab or you can access publicly-available sample publication results from the Login page. |
The following fields are listed in the search results. To return to the Search page, click the Back ( ) button not the Browser button.
Publications Search Results Columns | Description |
---|---|
Publication REF | Click the hypertext link to open the PubMed.gov page for that Publication. |
Authors | The author(s) of the publication. |
Title | The title of the publication. |
Sample Composition | Click the link to open the caNanoLab Sample Composition form. |
Sample Characterization | Click the link to the open the caNanoLab Sample Characterization form. |
Journal | The journal where the publication was published. |
Year | The year that the journal was published. |
Vol(lss)Pg | The volume and page number in the journal where the publication was published. |
For any entry, click on the hypertext link in the Title column (first) to open the associated file.
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